cluster # 1640

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Oryza sativa
cluster # 1640 cluster # 1640 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1640#0 length = 549 sequences # 1

consensus_1640#1 length = 388 sequences # 1

consensusID : consensus_1640#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [GACGTCGACATCGGCAGCTCCGCCATCGCCAGCGCCATCCTCCACCTCGCGCTCGGCGCGGTCACCTCCGTCACCATCGACATGGGGTTCCTCGTCGAGTCCCAGTCCGAGGAGGAGCTCCCCGAGAGGCTCTTCGGCGCCGTGCGCATCGCGCAGATGGAGATGGGCGCCGCCAAGTATGTCGAGACGGCGCCCGACGATGTGGTCCCCGACGCCGGCAGGGCTGGCGCCGGATTCAGGGTTCACTCGGCGAAGGTGGCCAACGATAGCCGCCACCAAGAACGCGCCGCCGGCAAGGTCGGGAGGTCGATGAGCTGCCAGGAACGCGGGAGCGGAGGAGGAGGAAAATAGATGCGAAGGAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTAGCCGGAGGAGAAAGGCCGGGGCACATAAAATGGGGAAGCGGCGAATACTCCCTTGATCATAATGTGCAAGTCACTGATTAAGCTGTGATCAGAACTGAAACCTGATCGATGAGAATAGTATATTATTCGTAATTATGATGCCAT]

[+] EMBL AK062416             [GACGTCGACATCGGCAGCTCCGCCATCGCCAGCGCCATCCTCCACCTCGCGCTCGGCGCGGTCACCTCCGTCACCATCGACATGGGGTTCCTCGTCGAGTCCCAGTCCGAGGAGGAGCTCCCCGAGAGGCTCTTCGGCGCCGTGCGCATCGCGCAGATGGAGATGGGCGCCGCCAAGTATGTCGAGACGGCGCCCGACGATGTGGTCCCCGACGCCGGCAGGGCTGGCGCCGGATTCAGGGTTCACTCGGCGAAGGTGGCCAACGATAGCCGCCACCAAGAACGCGCCGCCGGCAAGGTCGGGAGGTCGATGAGCTGCCAGGAACGCGGGAGCGGAGGAGGAGGAAAATAGATGCGAAGGAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTAGCCGGAGGAGAAAGGCCGGGGCACATAAAATGGGGAAGCGGCGAATACTCCCTTGATCATAATGTGCAAGTCACTGATTAAGCTGTGATCAGAACTGAAACCTGATCGATGAGAATAGTATATTATTCGTAATTATGATGCCAT]




>consensus_1640#0
GACGTCGACATCGGCAGCTCCGCCATCGCCAGCGCCATCCTCCACCTCGCGCTCGGCGCG
GTCACCTCCGTCACCATCGACATGGGGTTCCTCGTCGAGTCCCAGTCCGAGGAGGAGCTC
CCCGAGAGGCTCTTCGGCGCCGTGCGCATCGCGCAGATGGAGATGGGCGCCGCCAAGTAT
GTCGAGACGGCGCCCGACGATGTGGTCCCCGACGCCGGCAGGGCTGGCGCCGGATTCAGG
GTTCACTCGGCGAAGGTGGCCAACGATAGCCGCCACCAAGAACGCGCCGCCGGCAAGGTC
GGGAGGTCGATGAGCTGCCAGGAACGCGGGAGCGGAGGAGGAGGAAAATAGATGCGAAGG
AAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTAGCCGGAGGAGAAAGG
CCGGGGCACATAAAATGGGGAAGCGGCGAATACTCCCTTGATCATAATGTGCAAGTCACT
GATTAAGCTGTGATCAGAACTGAAACCTGATCGATGAGAATAGTATATTATTCGTAATTA
TGATGCCAT

consensusID : consensus_1640#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [ACAGTGTGAGAGATGGGCGCCCCCAAGTATGTCGAGACGGCGCCCGGAACAATGTGGTCCCCGAGCCCAGACAGGCTGGCACCAGGATTCAGGGTTCACTCGCCGAAGGTGCCAACGATAGCCCCCCCCCAGAGAACGCGCCCGCCGGCAAGGTCGGGAGTCGATGACTGCCACGAGGAACGCGAGACCGGAGGAGGAGGAAAATAAGATGCGAAGGAAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTACCGGAGGAGAAAGCCCGGGGCACATAAAATGGGGAACCGGCGAATACTCCCCGTGGATCATAAGTGTCGCAAGTCACTGATTAAGCTGTGGATCAAGAACTGAAACCTGATCGATGAGAATAGTA]

[+] EMBL BI811372             [ACAGTGTGAGAGATGGGCGCCCCCAAGTATGTCGAGACGGCGCCCGGAACAATGTGGTCCCCGAGCCCAGACAGGCTGGCACCAGGATTCAGGGTTCACTCGCCGAAGGTGCCAACGATAGCCCCCCCCCAGAGAACGCGCCCGCCGGCAAGGTCGGGAGTCGATGACTGCCACGAGGAACGCGAGACCGGAGGAGGAGGAAAATAAGATGCGAAGGAAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTACCGGAGGAGAAAGCCCGGGGCACATAAAATGGGGAACCGGCGAATACTCCCCGTGGATCATAAGTGTCGCAAGTCACTGATTAAGCTGTGGATCAAGAACTGAAACCTGATCGATGAGAATAGTA]




>consensus_1640#1
ACAGTGTGAGAGATGGGCGCCCCCAAGTATGTCGAGACGGCGCCCGGAACAATGTGGTCC
CCGAGCCCAGACAGGCTGGCACCAGGATTCAGGGTTCACTCGCCGAAGGTGCCAACGATA
GCCCCCCCCCAGAGAACGCGCCCGCCGGCAAGGTCGGGAGTCGATGACTGCCACGAGGAA
CGCGAGACCGGAGGAGGAGGAAAATAAGATGCGAAGGAAAGAGAGATCTTTGGATGGAGA
AAGAGGGGATTGAGATCGAACTACCGGAGGAGAAAGCCCGGGGCACATAAAATGGGGAAC
CGGCGAATACTCCCCGTGGATCATAAGTGTCGCAAGTCACTGATTAAGCTGTGGATCAAG
AACTGAAACCTGATCGATGAGAATAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1640#0      GACGTCGACATCGGCAGCTCCGCCATCGCCAGCGCCATCCTCCACCTCGCGCTCGGCGCG 60
consensus_1640#1      ------------------------------------------------------------
                                                                                  

consensus_1640#0      GTCACCTCCGTCACCATCGACATGGGGTTCCTCGTCGAGTCCCAGTCCGAGGAGGAGCTC 120
consensus_1640#1      ------------------------------------------------------------
                                                                                  

consensus_1640#0      CCCGAGAGGCTCTTCGGCGCCGTGCGCATCGCGCAGATGGAGATGGGCGCCGCCAAGTAT 180
consensus_1640#1      ------------------------------ACAGTGTGAGAGATGGGCGCCCCCAAGTAT 30
                                                     *   *   ************ ********

consensus_1640#0      GTCGAGACGGCGCCCG--ACGATGTGGTCCCCGACGCCGGCAGGGCTGGCGCC-GGATTC 237
consensus_1640#1      GTCGAGACGGCGCCCGGAACAATGTGGTCCCCGAGCCCAGACAGGCTGGCACCAGGATTC 90
                      ****************  ** *************  ** *   ******* ** ******

consensus_1640#0      AGGGTTCACTCGGCGAAGGTGGCCAACGATAGCCGCCACC--AAGAACGCGCC-GCCGGC 294
consensus_1640#1      AGGGTTCACTCGCCGAAGGTG-CCAACGATAGCCCCCCCCCAGAGAACGCGCCCGCCGGC 149
                      ************ ******** ************ ** **   ********** ******

consensus_1640#0      AAGGTCGGGAGGTCGATGA--GCTGCCAGGAACGCGGGAGCGGAGGAGGAGGAAAATA-G 351
consensus_1640#1      AAGGTCGGGAG-TCGATGACTGCCACGAGGAACGCGAGACCGGAGGAGGAGGAAAATAAG 208
                      *********** *******  **  * ********* ** ****************** *

consensus_1640#0      ATGCGAAGGAA-GAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTAGCCGG 410
consensus_1640#1      ATGCGAAGGAAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTA-CCGG 267
                      *********** ******************************************* ****

consensus_1640#0      AGGAGAAAGGCCGGGGCACATAAAATGGGGAAGCGGCGAATACTCCC--TTGATCATAA- 467
consensus_1640#1      AGGAGAAAGCCCGGGGCACATAAAATGGGGAACCGGCGAATACTCCCCGTGGATCATAAG 327
                      ********* ********************** **************  * ******** 

consensus_1640#0      TGT-GCAAGTCACTGATTAAGCTGTG-ATCA-GAACTGAAACCTGATCGATGAGAATAGT 524
consensus_1640#1      TGTCGCAAGTCACTGATTAAGCTGTGGATCAAGAACTGAAACCTGATCGATGAGAATAGT 387
                      *** ********************** **** ****************************

consensus_1640#0      ATATTATTCGTAATTATGATGCCAT 549
consensus_1640#1      A------------------------ 388
                      *