These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16492#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 31 consensus length = 1192 fasta sequence [TCGTCCCCGATCCCCTCCTCCTCTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT-CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT-GGA-TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT-GGA-TCT-GGGACCAA--TATA-CAAGACAATTC-TC-TTGT-CCATGT-GGC-AAAATCT-AATC-TT-AGT-GG-AAAAGTCTTT-CCAACCATCA-TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG-AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA--TT-CAAT-GATT--GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC-TCGAGTTCTG-CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC-AAAAGCTGG-CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG-CGCTCCATGGAACAAAGAGAACCATTAC-GCACAAAAAACTAGCATCGTTTTGACAAGTTAAAAAAAA] [+] EMBL AK104205 [TCGTCCCCGATCCCCTCCTCCTCTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCG ] [+] EMBL AK060908 [TCGTCCCCGATCCCCTCCTCCTCTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCG ] [+] EMBL AK071713 [ GATCCCCTCCTCCTCTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGA ] [+] EMBL OS2004A [ CTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACAATTATGCACATCTTTGACAAAACCCCTCATGTTCANAGAGATGCATTTGTTCCCCCAAGTGCAT CTCTNAT ] [+] EMBL OSC25562 [ TCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGNCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGNCGGNCTCGGNNAGGNCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGNCCTCGACCGCCTCGGCTGCCGACTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCC ] [+] EMBL AU160853 [ TCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGNGCGCCGCCGCCGTCGCCGCCGCCGACGTAGCCGCNTGGNTGGAGGAGGAGATGGNCGGNCTCGGGAAGGNCTTCTACGCGGTAGGGTTCTGGNTCCGGGAGACCGGCCAGGNCCTCGACCGCCTCGGCTGCCG CTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTNACAAAACCCCTCATGTTCACAGAGATGCATTTTTTGCCCCAAGTGCATNTTCTCATTGGTGATATTCAAGTTGGACAAGGGGCTTCAATTNGGTATGGGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT NGG TCT GGGACCAA TATA CAAGACAATTC TT TTGT CCATNT GG AAAAT ] [+] EMBL OSS4865A [ CCTCGAGATCTCGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGTCGTNGNCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGNCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGNCCTCGACCGCCTNGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGATTGCGTCTTAAGAGGGGATGCAAACAACGGTCAAATT GGA TCTNGGGACCAA TATA CAAG CAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG NAAAG CTT ] [+] EMBL AK122051 [ CGCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCG ] [+] EMBL AU163552 [ GCAAGGTCAGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTANGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT NTCTCANTGGTGATATTCAAG ] [+] EMBL AU095119 [ TCAGGGAGCCAGCAAATTCACCCGCGATTCCG GCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTATGGGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATTGGGA TCTGGGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGN CAAATCT AATC TT AGT GG AAAAGTCTTT CCAACat ] [+] EMBL CB680957 [ AGGGAGCCTTCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGTCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGCGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCATACAACGTTCAGATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCCTACCGCTGCATTACCAGGATGTACTGTTG AGGACGAACCTTTTGTGGGTATGGGGGC ] [+] EMBL AU062927 [ AGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTNTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATTGGGA TCT TGGNCCAA TATA CAAG CAATTC TCTTTGT CCATGT NGC AAAATCT AATCTTT AGT GG GAAAGTCTTT CC ANCATAA TTGGGGGTAA ] [+] EMBL AU075808 [ AGGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTCATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT A ] [+] EMBL CA758879 [ ggCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCGCCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCTGGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACTACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTC ] [-] EMBL CB663870 [ ATTTGTTGCCCCAAGTGCAT CTCTCATTGGTGATATTCAAGTTGGACAAGGAGCTTCAATTTGGTAT GGA TGCGTCTTAAGAGGGGATGCAAACAACGTTCAAATT GGA TCT GGGACCAA TATA CAAGACAATTC TC TTGT CCATGT GGC AAAATCT AATC TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGCAAAAAGCTGGCCCATGTACTTC ] [+] EMBL AU030693 [ ttnaanatTT GNATTCT GGGACCCANTTATACCAAGACAATTCTTCTTTGTCCCATGTGGGCAAAAATCTAAATC TTAAGTGGG AAAAGTCTTTCCCAACCATCATTTGGGGATAACNTCACAGTAGGTCATAGTGCTGTATTACAAGGATNTACTGTTGAAGGACGAAGCATTTGTTGGTATGGGGNCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTNTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAG TGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAaaaaaaaaa ] [+] EMBL OSAA31827 [ AATC TT AGT GGAAAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCC ] [+] EMBL AU030674 [ C TT AGT GG AAAAGTCTTT CCAACCATCA TTGGGGATAACGTCACAGTAGGTCATAGTGCTGTATTACAAGGATGTACTGTTG AGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATGGTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAG TGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCNTTGTGC AAAAaaaaaaaaa ] [+] EMBL AU030303 [ AAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAAGGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTGATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAG TGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCNATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GNACAAAAA ] [+] EMBL AU108856 [ TTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAG TGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCNNATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTA TTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GCACAAAAAA ] [+] EMBL AU182279 [ TTCTAACTATTCCACTCTGGCAAAGGCCCATGCTGCTGAGAATGCCAAGCCTGTTGAAAAGACTGAATTTGAGAAGCTGTTCCGCAAGAAGTCTGCTCACCAGGATGAGGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GCACAAAAATCTAGCATCGTTTTGACAAGTTAAAAAAAA] [+] EMBL BQ908258 [ GGAACACGA TT CAAT GATT GGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTTGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCCTTGTGC NAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCNTTAC GCACAAAAAAaaaa ] [+] EMBL BQ908634 [ cCACGAGTTTCCAATGGATTTGGGTGCTACTCGGGAGGTTACTCCGGAGCTGACGCCCGTCGAGTTCTGCCCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTT TGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCNTTAC GCACAAAAAAaaaa ] [+] EMBL AU160852 [ TT GGTGCTACTCGGGAGGTTACTCCGGAG TGACGCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTA TTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAAAAAAaaa ] [+] EMBL AU163919 [ GCCC TCGAGTTCTG CCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAa ] [+] EMBL AU197672 [ GTTCTG GCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGNCAGTGCAGGATTGTTGAAGGTGTCACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATGCCGCTCCATGGAACAAAGAGAACCATTACAGCACAAAAATCTAGCATCGTTTTGACAAaaaa ] [+] EMBL AU108402 [ TCTGTTTTTNCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GCACAAAAA ] [+] EMBL OSS3871A [ TCTGTTTTTNCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAG ] [+] EMBL AU108427 [ CTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTA TTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GCACAAAAA ] [+] EMBL AU097655 [ CTGTTTTTGCTTCTCTCTGGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTCGGCGGTTTATGTTTACTTTCCTCCCNNATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTA TTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGAACCATTAC GCACAAAAA ] [-] EMBL OSAA31879 [ GTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTTGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGC AAAAGCTGG CCATGTACTTCGTTTTCTGTATTCCATATGTTTAAGATG CGCTCCATGGAACAAAGAGA ] consensusID : consensus_16492#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 522 fasta sequence [TACGTGATGTGCCACACTGTTGGTGCAAAAAGGGCGCCGATNGGCTGATCTGGAGGAATGGCCAAGGCCTGGTGTGGAAATAGGACTGGGAATGTTGGAGGAAGCTGGGTGTGCCGCAAAGAAGTGCTGCTGCACCCAGGGATGGAGGGATACACGATGTGCAATGGATGTGGGTGCTGACTGCGGGGAGGTTGACTGCCGGGAGCTGACGCCCTGCGGAGTGTGCTGGCCCAATGAAACCTGTGGTGTGTGCTGGTGTGTTTGGCTGTGCTGCTGCTGGGTGCCTGTGTGGCAATGCTATGCTGTATATTGGACA-GTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTTGGCGGTTTATGTTTACTTTCCT-CCCCATAATTTTGGGTCGAGCATTGTGCAAAAAAATGGCCATGTAACCCTTCGTTTTGTATTCCCATATTGTTTTTTTAAAGGAATGCGCTCCATGGAAAGAGAACCTTACGCACAGAAATCTAGCATCGTTTGACAGTAAAAAAA] [+] EMBL BQ907028 [TACGTGATGTGCCACACTGTTGGTGCAAAAAGGGCGCCGATNGGCTGATCTGGAGGAATGGCCAAGGCCTGGTGTGGAAATAGGACTGGGAATGTTGGAGGAAGCTGGGTGTGCCGCAAAGAAGTGCTGCTGCACCCAGGGATGGAGGGATACACGATGTGCAATGGATGTGGGTGCTGACTGCGGGGAGGTTGACTGCCGGGAGCTGACGCCCTGCGGAGTGTGCTGGCCCAATGAAACCTGTGGTGTGTGCTGGTGTGTTTGGCTGTGCTGCTGCTGGGTGCCTGTGTGGCAATGCTATGCTGTATATTGGACA GTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTTGGCGGTTTATGTTTACTTTCCT CCCCATAATTTTGGGTCGAGCATTGTGCAAAAAAA ] [+] EMBL BI811965 [ tctTATATTGGACACGTGCAGGATTGTTGAAGGTGACACTGTTCCATGAGTTTGCCGGTTTATGTTTACTTTCCTCCCCCATAATTTTGGGTCGAGCATTGTGCACAAAGCTGGCCATGTAACCCTTCGTTTTGTATTCCCATATTGTTTTTTTAAAGGAATGCGCTCCATGGAAAGAGAACCTTACGCACAGAAATCTAGCATCGTTTGACAGTAAAAAAA] consensusID : consensus_16492#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [CCCAACCCCCTGTGGGGTTTNTCCCACAATGGAAGGTTTTGGCCCGGCGTTTTATAATTGGTTTTAACCTTTTCCCCTCCCCCCCCGAATAATTTTGGGTCGAGCATTGTGCAAAAGCTGCCCATGTACTTCGTTTTCNGTATTCCATATGTTTAAGATGCGCTCCCATGGAACCAAGAGAACCATTACGCACA] [+] EMBL BQ909007 [CCCAACCCCCTGTGGGGTTTNTCCCACAATGGAAGGTTTTGGCCCGGCGTTTTATAATTGGTTTTAACCTTTTCCCCTCCCCCCCCGAATAATTTTGGGTCGAGCATTGTGCAAAAGCTGCCCATGTACTTCGTTTTCNGTATTCCATATGTTTAAGATGCGCTCCCATGGAACCAAGAGAACCATTACGCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16492#0 TCGTCCCCGATCCCCTCCTCCTCTCCTCTCCTCTCCACTCCTCGAGATCTCGCAAGGTCA 60 consensus_16492#1 ------------------------------------------------------------ consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 GGGAGCCAGCAAATTCACCCGCGATTCCGCGCGCCGCCGCCGTCGCCGCCGCCGACGTCG 120 consensus_16492#1 ------------------------------------------------------------ consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 CCGCCTGGGTGGGGGAGGAGATGGCCGGCCTCGGGAAGGCCTTCTACGCGGTAGGGTTCT 180 consensus_16492#1 ------------------------------------------------------------ consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 GGATCCGGGAGACCGGCCAGGCCCTCGACCGCCTCGGCTGCCGCCTCCAGGGGAACTACT 240 consensus_16492#1 ------------------------------------------------------------ consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 ACTTCCACGAGCAGCTCTCAAGGCATCGCACACTTATGAACATCTTTGACAAAACCCCTC 300 consensus_16492#1 ------------------------------------------------------------ consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 ATGTTCACAGAGATGCATTTGTTGCCCCAAGTGCATCTCTCATTGGTGATATTCAAGTTG 360 consensus_16492#1 ------------------------------------------------------------ consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 GACAAGGAGCTTCAATTTGGTATGGATGCGTCTTAAGAGGGGATGCAAACAACGTTCAAA 420 consensus_16492#1 ------------------------------------------------------------ consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 TTGGATCTGGGACCAATATACAAGACAATTCTCTTGTCCATGTGGCAAAATCTAATCTTA 480 consensus_16492#1 ------------------------------------------------------------ consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 GTGGAAAAGTCTTTCCAACCATCATTGGGGATAACGTCACAGTAGGTCATAGTGCTGTAT 540 consensus_16492#1 ------------------------------------------------------------ consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 TACAAGGATGTACTGTTGAGGACGAAGCATTTGTTGGTATGGGGGCGACCCTGTTAGATG 600 consensus_16492#1 ------------------------------------------------------------ consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 GTGTTGTCGTGGAAAAGCATGGGATGGTTGCTGCTGGAGCCCTTGTAAGACAGAACACAA 660 consensus_16492#1 -------------------------------------------TACGTGATGTGCCACAC 17 consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 GGATCCCCTGTGGAGAGGTATGGGGAGGAAACCCTGCCAAATTCCTGAGGAAGCTCACTG 720 consensus_16492#1 TGTTGGTGCAAAAAGGGCGCCGATNGGCTGATCTGGAGGAATGGCCAAGGCCTGGTGTGG 77 consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 ATGACGAGATTACGTTTATCAAAGAATCAGCTTCTAACTATTCCACTCTGGCAAAGGCCC 780 consensus_16492#1 A-AATAGGACTGGGAATGTTGGAGGA--AGC---TGGGTGTGCCGCA--AAGAAGTGCTG 129 consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 ATGCTGCTGAGAATGCCAAGCCTGTTGAAAAG-ACTGAATTTGAGAAGCTGTTCCGCAAG 839 consensus_16492#1 CTGCACCCAGGGATGGAGGGATACACGATGTGCAATGGATGTG-GGTGCTGA-CTGCGGG 187 consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 AAGTCTGCTCACCAGGATGAGGAACACGATTCAATGATTGGTGCTACTCGGGAGGTTACT 899 consensus_16492#1 GAGGTTGACTGCCGGGAGCTGACGCCCTGCGGAGTG-----TGCTGGCCCAATGA--AAC 240 consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 CCGGAGCTGACGCCCTCGAGTTCTGCCCAATAAACCTTGTTTCTGTTTTTGCTTCTCTCT 959 consensus_16492#1 CTGTGGTGTGTGCTGGTGTGTTTGGCTG------------TGCTGCTGCTGGGTGCCTGT 288 consensus_16492#2 ------------------------------------------------------------ consensus_16492#0 GGTGCCTTTGCATCATCTTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCA 1019 consensus_16492#1 G-TGGCAATGCTATGCTGTATATTGGACAGTGCAGGATTGTTGAAGGTGACACTGTTCCA 347 consensus_16492#2 -CCCAACCCCCTGTGGGGTTTNTCCCACAATGGAAGGTTTTGGCC--CGGCGTTTTATAA 57 * * * * *** ** * * ** * * * * * * * consensus_16492#0 TGAGTTCGGCGGTTTATGTTTACTTTCCTCCCCAATAATTTTGGGTCGAGCATTGTGCAA 1079 consensus_16492#1 TGAGTTTGGCGGTTTATGTTTACTTTCCTCCCCA-TAATTTTGGGTCGAGCATTGTGCAA 406 consensus_16492#2 TTGGTTTTAACCTTT---TCCCCTCCCCCCCCGAATAATTTTGGGTCGAGCATTGTGCAA 114 * *** *** * ** ** *** * ************************* consensus_16492#0 AAGC-TGGCCATGTA---CTTCGTTTTCTGT----ATTCCATATGTTTAAG---ATGCGC 1128 consensus_16492#1 AAAAATGGCCATGTAACCCTTCGTTTTGTATTCCCATATTGTTTTTTTAAAGGAATGCGC 466 consensus_16492#2 AAGC-TGCCCATGTA---CTTCGTTTTCNGT----ATTCCATATGTTTAAG---ATGCGC 163 ** ** ******* ********* * ** * * ***** ****** consensus_16492#0 TCC-ATGGAACAAAGAGAACCATTACGCACAAAAAACTAGCATCGTTTTGACAAGTTAAA 1187 consensus_16492#1 TCC-ATGGA---AAGAGAACC-TTACGCACAGAAATCTAGCATCGTTT-GACAG--TAAA 518 consensus_16492#2 TCCCATGGAACCAAGAGAACCATTACGCACA----------------------------- 194 *** ***** ********* ********* consensus_16492#0 AAAAA 1192 consensus_16492#1 AAAA- 522 consensus_16492#2 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||