These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 31 consensus length = 627 fasta sequence [GCTACGTAACGGCATAACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA-CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA-CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC-TC-TCAG-TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT-CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG-CTGG-GTCGTTGACAT-CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATCCGGCGACAAATCCGGGAAGTTCCTCTCCNCNCCNCCACAATGGCGGC] [+] EMBL CF321539 [GCTACGTAACGGCATAACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATCCGGCGA ] [+] EMBL CF278733 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGGGAAATTCATTATTTCCCTGAATAACGACTACCTCACAAAATGTCACAGGACGGAAGGCTAAAATTACAATCAAAAGTTCATTTATCCGAATGTGCATTTGATAACCCTCACACATACATACACACACCTAAAAGTTTTAAAAAATGCCCAATCTACCA CCGCAGTAAAGTCTGGGCATCTTTAAAAGGTCTTATGGATAGTTTGTTTATACCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAAATTGTGTAGGACTGGATGTCACCCACCAAAACCATTTCTTCAAGTTTGTC ] [-] EMBL AU077474 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGNGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL AU057482 [ TTTTTTTTTTTTTTTTTTTTTTTTCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAATTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAAC ] [+] EMBL AA752107 [ TTTTTTTTTTTTTTTTATATAAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTACAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCA T CCCACC TTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAA CCATCAACNGAC CTGG GTCNTTGAAAT CCA TCACC AACTTNGGCAA GGAANAACTGCTT CTCCGANATGGATTG GGGGAACCC ATCNGNAACCAAATCCGGGAAGTTCCTCTCCNCNCCNCCACAATGGCGGC] [-] EMBL AU174878 [ TTTTTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGG ] [+] EMBL CF314024 [ TTTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGAATGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACGCCTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGA ] [-] EMBL BI795072 [ TTTTTTATATAAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTACAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAA TTTGCAA CCCATGGAACTCGTTTTCATCAAGA TGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAG TTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTC TTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGC TTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGG ] [+] EMBL CF335647 [ TTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAACA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGGTAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCGCGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAAC ] [+] EMBL CF317689 [ TTTTATAT AATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCTGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGGNGTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGAT ] [-] EMBL AA754355 [ TATATCAATAGGTGAGARTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TCTTCAGAMCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATTCCCCACCtcg ] [-] EMBL AK059360 [ GTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAGGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTC ] [-] EMBL CF321045 [ TCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATC AGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [+] EMBL CF279085 [ GAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCATATTTTTAAGAGATGCCCAATCAAGCA CCACAGCAGAGTCTGGGCATTTTTACAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACACAGCAAAACCATTTCTTCGAGTTTGTTTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTCTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCAGAAG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGTCGACCTGCTTCCTCCGACATGGATTGCGGCGA ] [+] EMBL AU225526 [ gccgctAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCATTCGCAGTAGAGTCTGGagcgg ] [-] EMBL CA754100 [ CAGGACGGAAGGCTAGAATACCAATCAGAAGTTCATTTATCCGGATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCT TCCGACATGGATTGCGGCGAG ] [-] EMBL CF339874 [ ACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF338354 [ ACACACCTCAAAG TTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF340529 [ ACACACCTCAAAG TTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTGTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAAGCTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF339993 [ CACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF337147 [ ACACCTCAAAG TTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF310988 [ ACACTTCAAAG TTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF321540 [ GAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF340595 [ CAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCANAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF335646 [ CTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGGTAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCGCGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCCGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF340146 [ GATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCANAACCATTTCTTCGAGTTTGTCTTGNGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF313903 [ TGCAACCCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCCTTC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATTCCCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACATCCCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF279084 [ GTGTAGGACTGGATGTCACACAGCAAAACCATTTCTTCGAGTTTGTTTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTCTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCAGAAG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGTCGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL AA752241 [ TCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATCCG ] [-] EMBL AU077475 [ TTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL AU174879 [ TGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGNCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] consensusID : consensus_16498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence [AGGACGGAAGGCTAGAATAACAATCAGAAGTTCATTTATCCGGAANGGGCATNTGATAACCTTCACACANACATACACACACTTCAAAGTTTTAAGAGATGGATAGTATGNATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCATGGAATTCGTTTTCATCAAGATTGTGTAGGANTGGATGTCACGCAGCAAAACCATTTCTTGGAGTTTGTCTTGGGGGCATATGATTCCACCCTCTCAGTCCTAGTTTCTTNGCAGGGTGAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCNGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATAAGGCGAGCACGAATTCAAAAAAGGTCTCCTCTTCCTCCTCCTCCCAGCGAGTGGGCGGCGCGCGCGGAGAGGGAAGAGACGGGGATGAGAGGAGCACGCAGCAGCAGCGGCAGCGGCGGAGAGGAGAGGAGAGGAGAGGGAGGAAGAGGAGGGAAAAGGGGAGAGGAATCGAAGAAGAAAAGTTTTCTACTC] [-] EMBL BE228970 [AGGACGGAAGGCTAGAATAACAATCAGAAGTTCATTTATCCGGAANGGGCATNTGATAACCTTCACACANACATACACACACTTCAAAGTTTTAAGAGATGGATAGTATGNATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCATGGAATTCGTTTTCATCAAGATTGTGTAGGANTGGATGTCACGCAGCAAAACCATTTCTTGGAGTTTGTCTTGGGGGCATATGATTCCACCCTCTCAGTCCTAGTTTCTTNGCAGGGTGAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCNGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG ] [-] EMBL CF278734 [ CCACCCTCTCAGTCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCATCATACATGGATTGCGGCGAGCCCGATAAGGCGAGCACGAATTCAAAAAAGGTCTCCTCTTCCTCCTCCTCCCAGCGAGTGGGCGGCGCGCGCGGAGAGGGAAGAGACGGGGATGAGAGGAGCACGCAGCAGCAGCGGCAGCGGCGGAGAGGAGAGGAGAGGAGAGGGAGGAAGAGGAGGGAAAAGGGGAGAGGAATCGAAGAAGAAAAGTTTTCTACTC] consensusID : consensus_16498#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [TTTTTTTTTTTTNTNTCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGANATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCCGCANCAAAACCATTTCTTCNAATTTGTCTTGGGGGCATATGAATCCNCCCCTCANTCCTAATTTCTTTGCAGGGTGNATCAATATCTTGCCCATTCCCCCCCTTTTTCTCATCTCTGGNTTGTTTAATATCCNGTTGAACCCCCNCCGGANCTNGGTCTTTTAAATCCCATCCCCAAANTNGGNANGGGAAACNGCTCCCCCAAATGANTTNGGTCCTTCCAATCCNGCNCCNGGGNTCNTNTTCTNAAGGCCCCCCNGGGAACCCCTTNTCCCTATAAGTTAATC] [-] EMBL AA753708 [TTTTTTTTTTTTNTNTCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGANATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCCGCANCAAAACCATTTCTTCNAATTTGTCTTGGGGGCATATGAATCCNCCCCTCANTCCTAATTTCTTTGCAGGGTGNATCAATATCTTGCCCATTCCCCCCCTTTTTCTCATCTCTGGNTTGTTTAATATCCNGTTGAACCCCCNCCGGANCTNGGTCTTTTAAATCCCATCCCCAAANTNGGNANGGGAAACNGCTCCCCCAAATGANTTNGGTCCTTCCAATCCNGCNCCNGGGNTCNTNTTCTNAAGGCCCCCCNGGGAACCCCTTNTCCCTATAAGTTAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16498#0 GCTACGTAACGGCATAACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGT 60 consensus_16498#2 ------------------------------------TTTTTTTTTTTTNTNTCAATAGGT 24 consensus_16498#1 ------------------------------------------------------------ consensus_16498#0 GAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTA 120 consensus_16498#2 GAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTA 84 consensus_16498#1 ----------------------------------------------AGGACGGAAGGCTA 14 ************** consensus_16498#0 GAATTACAATCAGAAGTTCATTTATCCG-AATGTGCATCTGATAACCCTCACACATACAT 179 consensus_16498#2 GAATTACAATCAGAAGTTCATTTATCCG-AATGTGCATCTGATAACCCTCACACATACAT 143 consensus_16498#1 GAATAACAATCAGAAGTTCATTTATCCGGAANGGGCATNTGATAACCTTCACACANACAT 74 **** *********************** ** * **** ******** ******* **** consensus_16498#0 ACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCACCGCAGTAGAGTCTGGGCATC 239 consensus_16498#2 ACACACACCTCAAAGTTTTAAGANATG--------------------------------- 170 consensus_16498#1 ACACACACTTCAAAGTTTTAAGAGATG--------------------------------- 101 ******** ************** *** consensus_16498#0 TCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAAC 299 consensus_16498#2 ----------------GATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAAC 214 consensus_16498#1 ----------------GATAGTATGNATATAGCAAAATTAAAGGATAGTAATTTTGCAAC 145 ********* ********************************** consensus_16498#0 CCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTT 359 consensus_16498#2 CCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTC-CGCANCAAAACCATTT 273 consensus_16498#1 CCATGGAATTCGTTTTCATCAAGATTGTGTAGGANTGGATGTCACGCAGCAAAACCATTT 205 ******** ************************* ******** **** *********** consensus_16498#0 CTTCGAGTTTGTCTTGGGGGCATATGATTCCACCCTCTCAGTCCTAGTTTCTTTGCAGGG 419 consensus_16498#2 CTTCNAATTTGTCTTGGGGGCATATGAATCCNCCC-CTCANTCCTAATTTCTTTGCAGGG 332 consensus_16498#1 CTTGGAGTTTGTCTTGGGGGCATATGATTCCACCCTCTCAGTCCTAGTTTCTTNGCAGGG 265 *** * ******************** *** *** **** ***** ****** ****** consensus_16498#0 TGAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCAC 479 consensus_16498#2 TGNATCAATATCTTGCCCATTCCCCCCCTTTTTCTCATCTCTGGNTT-GTTTAATATC-C 390 consensus_16498#1 TGAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCNGGCTTTGTTGAATATCAC 325 ** **** **************** **************** ** ** *** ****** * consensus_16498#0 TGTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGG 539 consensus_16498#2 NGTTGAACCCCCNCCGGAN-CTNGGTCTTTTAAATCCCATCC-CCAAANTNGGNANGGGA 448 consensus_16498#1 TGTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGG 385 ** * ** * **** ** **** ** * ******* * ***** * ** ** consensus_16498#0 ACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATCCGGCGA---CAAATCCGGG 596 consensus_16498#2 AACNGCTCCCCCAAATGANTTNGGTCCTTCCAATCCNGCNCCNGGGNT--CNTNTTCTNA 506 consensus_16498#1 ACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATAAGGCGAGCACGAATTCAAA 445 * ** * * ** * * * * * ** * * * * * * consensus_16498#0 AAGTTCCTCT-----CCNCNCCNCCACAATGGCGGC------------------------ 627 consensus_16498#2 AGGCCCCCCNGGGAACCCCTTNTCCCTATAAGTTAATC---------------------- 544 consensus_16498#1 AAAGGTCTCCTCTTCCTCCTCCTCCCAGCGAGTGGGCGGCGCGCGCGGAGAGGGAAGAGA 505 * * * * * ** * consensus_16498#0 ------------------------------------------------------------ consensus_16498#2 ------------------------------------------------------------ consensus_16498#1 CGGGGATGAGAGGAGCACGCAGCAGCAGCGGCAGCGGCGGAGAGGAGAGGAGAGGAGAGG 565 consensus_16498#0 ----------------------------------------------------- consensus_16498#2 ----------------------------------------------------- consensus_16498#1 GAGGAAGAGGAGGGAAAAGGGGAGAGGAATCGAAGAAGAAAAGTTTTCTACTC 618 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||