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Oryza sativa
cluster # 16498 cluster # 16498       Sequences # 34       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_16498#0 length = 627 sequences # 31  
consensus_16498#1 length = 618 sequences # 2  
consensus_16498#2 length = 544 sequences # 1  

consensusID : consensus_16498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 31
consensus length = 627
fasta sequence
                              [GCTACGTAACGGCATAACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA-CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA-CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC-TC-TCAG-TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT-CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG-CTGG-GTCGTTGACAT-CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATCCGGCGACAAATCCGGGAAGTTCCTCTCCNCNCCNCCACAATGGCGGC]

[+] EMBL CF321539             [GCTACGTAACGGCATAACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATCCGGCGA                                         ]
[+] EMBL CF278733             [                    TTTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGGGAAATTCATTATTTCCCTGAATAACGACTACCTCACAAAATGTCACAGGACGGAAGGCTAAAATTACAATCAAAAGTTCATTTATCCGAATGTGCATTTGATAACCCTCACACATACATACACACACCTAAAAGTTTTAAAAAATGCCCAATCTACCA CCGCAGTAAAGTCTGGGCATCTTTAAAAGGTCTTATGGATAGTTTGTTTATACCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAAATTGTGTAGGACTGGATGTCACCCACCAAAACCATTTCTTCAAGTTTGTC                                                                                                                                                                                                                                                                      ]
[-] EMBL AU077474             [                     TTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGNGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL AU057482             [                            TTTTTTTTTTTTTTTTTTTTTTTTCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAATTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAAC                                                                                                                                                                                                                                                                                        ]
[+] EMBL AA752107             [                                TTTTTTTTTTTTTTTTATATAAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTACAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCA T CCCACC  TTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAA CCATCAACNGAC  CTGG GTCNTTGAAAT  CCA TCACC AACTTNGGCAA GGAANAACTGCTT CTCCGANATGGATTG GGGGAACCC ATCNGNAACCAAATCCGGGAAGTTCCTCTCCNCNCCNCCACAATGGCGGC]
[-] EMBL AU174878             [                                        TTTTTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGG                                                                                                                                      ]
[+] EMBL CF314024             [                                          TTTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGAATGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACGCCTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGA                                                 ]
[-] EMBL BI795072             [                                          TTTTTTATATAAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTACAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAA TTTGCAA CCCATGGAACTCGTTTTCATCAAGA TGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAG TTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTC TTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGC TTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGG                                                                 ]
[+] EMBL CF335647             [                                           TTTTTATATCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAACA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGGTAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCGCGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAAC                                                                                                   ]
[+] EMBL CF317689             [                                            TTTTATAT AATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCTGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGGNGTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGAT                                                ]
[-] EMBL AA754355             [                                               TATATCAATAGGTGAGARTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TCTTCAGAMCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATTCCCCACCtcg                                                                                                                                                                                     ]
[-] EMBL AK059360             [                                                          GTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAGGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTC                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF321045             [                                                                 TCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATC AGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[+] EMBL CF279085             [                                                                              GAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCATATTTTTAAGAGATGCCCAATCAAGCA CCACAGCAGAGTCTGGGCATTTTTACAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACACAGCAAAACCATTTCTTCGAGTTTGTTTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTCTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCAGAAG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGTCGACCTGCTTCCTCCGACATGGATTGCGGCGA                                                       ]
[+] EMBL AU225526             [                                                                                          gccgctAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCATTCGCAGTAGAGTCTGGagcgg                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CA754100             [                                                                                                         CAGGACGGAAGGCTAGAATACCAATCAGAAGTTCATTTATCCGGATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCT   TCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF339874             [                                                                                                                                                                                   ACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF338354             [                                                                                                                                                                                     ACACACCTCAAAG TTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF340529             [                                                                                                                                                                                     ACACACCTCAAAG TTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTGTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAAGCTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF339993             [                                                                                                                                                                                      CACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF337147             [                                                                                                                                                                                       ACACCTCAAAG TTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF310988             [                                                                                                                                                                                       ACACTTCAAAG TTTAAGAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF321540             [                                                                                                                                                                                                        GAGATGCCCAATCTAGCA CCGCAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF340595             [                                                                                                                                                                                                                              CAGTAGAGTCTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCANAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF335646             [                                                                                                                                                                                                                                       CTGGGCATCTCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGGTAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCGCGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCCGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF340146             [                                                                                                                                                                                                                                                                GATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAA CCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCANAACCATTTCTTCGAGTTTGTCTTGNGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF313903             [                                                                                                                                                                                                                                                                                                      TGCAACCCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCCTTC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATTCCCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACATCCCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL CF279084             [                                                                                                                                                                                                                                                                                                                                       GTGTAGGACTGGATGTCACACAGCAAAACCATTTCTTCGAGTTTGTTTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTCTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCAGAAG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGTCGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL AA752241             [                                                                                                                                                                                                                                                                                                                                                                        TCTTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATCCG                                             ]
[-] EMBL AU077475             [                                                                                                                                                                                                                                                                                                                                                                          TTCGAGTTTGTCTTGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]
[-] EMBL AU174879             [                                                                                                                                                                                                                                                                                                                                                                                       TGGGGGCATATGATTCCACCC TC TCAG TCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGNCCATT CCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACG CTGG GTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                      ]


>consensus_16498#0 GCTACGTAACGGCATAACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGT GAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTA GAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATA CACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCACCGCAGTAGAGTCTGGGCATCT CTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAACC CATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTTC TTCGAGTTTGTCTTGGGGGCATATGATTCCACCCTCTCAGTCCTAGTTTCTTTGCAGGGT GAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACT GTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGGA CGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATCCGGCGACAAATCCGGGAAGT TCCTCTCCNCNCCNCCACAATGGCGGC



consensusID : consensus_16498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 618
fasta sequence
                              [AGGACGGAAGGCTAGAATAACAATCAGAAGTTCATTTATCCGGAANGGGCATNTGATAACCTTCACACANACATACACACACTTCAAAGTTTTAAGAGATGGATAGTATGNATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCATGGAATTCGTTTTCATCAAGATTGTGTAGGANTGGATGTCACGCAGCAAAACCATTTCTTGGAGTTTGTCTTGGGGGCATATGATTCCACCCTCTCAGTCCTAGTTTCTTNGCAGGGTGAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCNGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATAAGGCGAGCACGAATTCAAAAAAGGTCTCCTCTTCCTCCTCCTCCCAGCGAGTGGGCGGCGCGCGCGGAGAGGGAAGAGACGGGGATGAGAGGAGCACGCAGCAGCAGCGGCAGCGGCGGAGAGGAGAGGAGAGGAGAGGGAGGAAGAGGAGGGAAAAGGGGAGAGGAATCGAAGAAGAAAAGTTTTCTACTC]

[-] EMBL BE228970             [AGGACGGAAGGCTAGAATAACAATCAGAAGTTCATTTATCCGGAANGGGCATNTGATAACCTTCACACANACATACACACACTTCAAAGTTTTAAGAGATGGATAGTATGNATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCATGGAATTCGTTTTCATCAAGATTGTGTAGGANTGGATGTCACGCAGCAAAACCATTTCTTGGAGTTTGTCTTGGGGGCATATGATTCCACCCTCTCAGTCCTAGTTTCTTNGCAGGGTGAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCNGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAG                                                                                                                                                                                                       ]
[-] EMBL CF278734             [                                                                                                                                                                                                                                          CCACCCTCTCAGTCCTAGTTTCTTTGCAGGGTGAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCATCATACATGGATTGCGGCGAGCCCGATAAGGCGAGCACGAATTCAAAAAAGGTCTCCTCTTCCTCCTCCTCCCAGCGAGTGGGCGGCGCGCGCGGAGAGGGAAGAGACGGGGATGAGAGGAGCACGCAGCAGCAGCGGCAGCGGCGGAGAGGAGAGGAGAGGAGAGGGAGGAAGAGGAGGGAAAAGGGGAGAGGAATCGAAGAAGAAAAGTTTTCTACTC]


>consensus_16498#1 AGGACGGAAGGCTAGAATAACAATCAGAAGTTCATTTATCCGGAANGGGCATNTGATAAC CTTCACACANACATACACACACTTCAAAGTTTTAAGAGATGGATAGTATGNATATAGCAA AATTAAAGGATAGTAATTTTGCAACCCATGGAATTCGTTTTCATCAAGATTGTGTAGGAN TGGATGTCACGCAGCAAAACCATTTCTTGGAGTTTGTCTTGGGGGCATATGATTCCACCC TCTCAGTCCTAGTTTCTTNGCAGGGTGAATCAGTATCTTGCCCATTCCCACCCTTTTTCT CATCTCNGGCTTTGTTGAATATCACTGTGAATCCATCAGCGGACGCTGGGTCGTTGACAT CCCATTCACCAAACTTGGGCAAGGGACGACCTGCTTCCTCCGACATGGATTGCGGCGAGC CCGATAAGGCGAGCACGAATTCAAAAAAGGTCTCCTCTTCCTCCTCCTCCCAGCGAGTGG GCGGCGCGCGCGGAGAGGGAAGAGACGGGGATGAGAGGAGCACGCAGCAGCAGCGGCAGC GGCGGAGAGGAGAGGAGAGGAGAGGGAGGAAGAGGAGGGAAAAGGGGAGAGGAATCGAAG AAGAAAAGTTTTCTACTC



consensusID : consensus_16498#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence
                              [TTTTTTTTTTTTNTNTCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGANATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCCGCANCAAAACCATTTCTTCNAATTTGTCTTGGGGGCATATGAATCCNCCCCTCANTCCTAATTTCTTTGCAGGGTGNATCAATATCTTGCCCATTCCCCCCCTTTTTCTCATCTCTGGNTTGTTTAATATCCNGTTGAACCCCCNCCGGANCTNGGTCTTTTAAATCCCATCCCCAAANTNGGNANGGGAAACNGCTCCCCCAAATGANTTNGGTCCTTCCAATCCNGCNCCNGGGNTCNTNTTCTNAAGGCCCCCCNGGGAACCCCTTNTCCCTATAAGTTAATC]

[-] EMBL AA753708             [TTTTTTTTTTTTNTNTCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCATCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGANATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCCGCANCAAAACCATTTCTTCNAATTTGTCTTGGGGGCATATGAATCCNCCCCTCANTCCTAATTTCTTTGCAGGGTGNATCAATATCTTGCCCATTCCCCCCCTTTTTCTCATCTCTGGNTTGTTTAATATCCNGTTGAACCCCCNCCGGANCTNGGTCTTTTAAATCCCATCCCCAAANTNGGNANGGGAAACNGCTCCCCCAAATGANTTNGGTCCTTCCAATCCNGCNCCNGGGNTCNTNTTCTNAAGGCCCCCCNGGGAACCCCTTNTCCCTATAAGTTAATC]


>consensus_16498#2 TTTTTTTTTTTTNTNTCAATAGGTGAGATTCATTATATCACTGAATAACGACTACATCAC AGAATGTCACAGGACGGAAGGCTAGAATTACAATCAGAAGTTCATTTATCCGAATGTGCA TCTGATAACCCTCACACATACATACACACACCTCAAAGTTTTAAGANATGGATAGTATGT ATATAGCAAAATTAAAGGATAGTAATTTTGCAACCCATGGAACTCGTTTTCATCAAGATT GTGTAGGACTGGATGTCCGCANCAAAACCATTTCTTCNAATTTGTCTTGGGGGCATATGA ATCCNCCCCTCANTCCTAATTTCTTTGCAGGGTGNATCAATATCTTGCCCATTCCCCCCC TTTTTCTCATCTCTGGNTTGTTTAATATCCNGTTGAACCCCCNCCGGANCTNGGTCTTTT AAATCCCATCCCCAAANTNGGNANGGGAAACNGCTCCCCCAAATGANTTNGGTCCTTCCA ATCCNGCNCCNGGGNTCNTNTTCTNAAGGCCCCCCNGGGAACCCCTTNTCCCTATAAGTT AATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_16498#0      GCTACGTAACGGCATAACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATCAATAGGT 60
consensus_16498#2      ------------------------------------TTTTTTTTTTTTNTNTCAATAGGT 24
consensus_16498#1      ------------------------------------------------------------
                                                                                   

consensus_16498#0      GAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTA 120
consensus_16498#2      GAGATTCATTATATCACTGAATAACGACTACATCACAGAATGTCACAGGACGGAAGGCTA 84
consensus_16498#1      ----------------------------------------------AGGACGGAAGGCTA 14
                                                                     **************

consensus_16498#0      GAATTACAATCAGAAGTTCATTTATCCG-AATGTGCATCTGATAACCCTCACACATACAT 179
consensus_16498#2      GAATTACAATCAGAAGTTCATTTATCCG-AATGTGCATCTGATAACCCTCACACATACAT 143
consensus_16498#1      GAATAACAATCAGAAGTTCATTTATCCGGAANGGGCATNTGATAACCTTCACACANACAT 74
                       **** *********************** ** * **** ******** ******* ****

consensus_16498#0      ACACACACCTCAAAGTTTTAAGAGATGCCCAATCTAGCACCGCAGTAGAGTCTGGGCATC 239
consensus_16498#2      ACACACACCTCAAAGTTTTAAGANATG--------------------------------- 170
consensus_16498#1      ACACACACTTCAAAGTTTTAAGAGATG--------------------------------- 101
                       ******** ************** ***                                 

consensus_16498#0      TCTAAAAGGTCTTATGGATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAAC 299
consensus_16498#2      ----------------GATAGTATGTATATAGCAAAATTAAAGGATAGTAATTTTGCAAC 214
consensus_16498#1      ----------------GATAGTATGNATATAGCAAAATTAAAGGATAGTAATTTTGCAAC 145
                                       ********* **********************************

consensus_16498#0      CCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTCACGCAGCAAAACCATTT 359
consensus_16498#2      CCATGGAACTCGTTTTCATCAAGATTGTGTAGGACTGGATGTC-CGCANCAAAACCATTT 273
consensus_16498#1      CCATGGAATTCGTTTTCATCAAGATTGTGTAGGANTGGATGTCACGCAGCAAAACCATTT 205
                       ******** ************************* ******** **** ***********

consensus_16498#0      CTTCGAGTTTGTCTTGGGGGCATATGATTCCACCCTCTCAGTCCTAGTTTCTTTGCAGGG 419
consensus_16498#2      CTTCNAATTTGTCTTGGGGGCATATGAATCCNCCC-CTCANTCCTAATTTCTTTGCAGGG 332
consensus_16498#1      CTTGGAGTTTGTCTTGGGGGCATATGATTCCACCCTCTCAGTCCTAGTTTCTTNGCAGGG 265
                       ***  * ******************** *** *** **** ***** ****** ******

consensus_16498#0      TGAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCTGGCTTTGTTGAATATCAC 479
consensus_16498#2      TGNATCAATATCTTGCCCATTCCCCCCCTTTTTCTCATCTCTGGNTT-GTTTAATATC-C 390
consensus_16498#1      TGAATCAGTATCTTGCCCATTCCCACCCTTTTTCTCATCTCNGGCTTTGTTGAATATCAC 325
                       ** **** **************** **************** ** ** *** ****** *

consensus_16498#0      TGTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGG 539
consensus_16498#2      NGTTGAACCCCCNCCGGAN-CTNGGTCTTTTAAATCCCATCC-CCAAANTNGGNANGGGA 448
consensus_16498#1      TGTGAATCCATCAGCGGACGCTGGGTCGTTGACATCCCATTCACCAAACTTGGGCAAGGG 385
                        **  * **  *  ****  ** **** ** * ******* * ***** * **    ** 

consensus_16498#0      ACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATCCGGCGA---CAAATCCGGG 596
consensus_16498#2      AACNGCTCCCCCAAATGANTTNGGTCCTTCCAATCCNGCNCCNGGGNT--CNTNTTCTNA 506
consensus_16498#1      ACGACCTGCTTCCTCCGACATGGATTGCGGCGAGCCCGATAAGGCGAGCACGAATTCAAA 445
                       *    ** *  *    **  * * *     * * ** *     * *    *   * *   

consensus_16498#0      AAGTTCCTCT-----CCNCNCCNCCACAATGGCGGC------------------------ 627
consensus_16498#2      AGGCCCCCCNGGGAACCCCTTNTCCCTATAAGTTAATC---------------------- 544
consensus_16498#1      AAAGGTCTCCTCTTCCTCCTCCTCCCAGCGAGTGGGCGGCGCGCGCGGAGAGGGAAGAGA 505
                       *     * *      *  *    **      *                            

consensus_16498#0      ------------------------------------------------------------
consensus_16498#2      ------------------------------------------------------------
consensus_16498#1      CGGGGATGAGAGGAGCACGCAGCAGCAGCGGCAGCGGCGGAGAGGAGAGGAGAGGAGAGG 565
                                                                                   

consensus_16498#0      -----------------------------------------------------
consensus_16498#2      -----------------------------------------------------
consensus_16498#1      GAGGAAGAGGAGGGAAAAGGGGAGAGGAATCGAAGAAGAAAAGTTTTCTACTC 618
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)