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Oryza sativa
cluster # 1652 cluster # 1652       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1652#0 length = 1616 sequences # 2  

consensusID : consensus_1652#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1616
fasta sequence
                              [GTGATGGCTTGTCGTGTCGCCGGCGGCGGCGGCGGCGGCGGGGGTTGGGTTTCCTCCGCCGCTTCGTCTCGGTGGCGAGGCCGACGGCCCATTGGGGCCCAATGGGGAAGGCCCATCCCCCGTGGCGGCTTCCCGGCCACGCCAACGCCTTCTTCTTCTGATGAACTCTCCCTGGCAACTGGGGCCCGCACCGACTCGCCCAACGGAATGGGGGGTTCGTTCGGATGGTTGGAGTTTCTCTTATCGACCTCGCACCCGTGCGAGGATGATGCGGCGGAGGAGCTTCCCGTCGAGCCGCCGGTGGCGGCGATGGATGCCGCCCATGACGGCCGCGATGAGGTGCGGGGAGAAGTCCCCTCCGAGCCGTCGGAAGTACTCGCTGGAGAGGAGGAGGCGGCGATGGATGCCGCCCATGACGGCCGAGGCGAGGTCCGGGGAGAGGTCACCTTCGAGCGGGCGATCGGTGCCTCCTCCCGTGCGGGTTACGAAGGCATCAAGCTGGGGGAGGAGCCCTCCCTCAAACCGGCGATGGTGGGCGCGCCCGAGATTAAGATGATCGAGATAGCAGAGGCCTCCTCTGTTGCCCAGTGGGACTTGTTGGCGGGGACGGAGGATTGCAGCCCTGAGATTAACCCGAAGATTGTCGACCTCCAGCAGCAGCAGCAGGAGGCCTCTCTCCTTCCTGATGAGGTCATCTCTGAGGCAGACGCGTCAATCTTGGCGCAGTATTCATCGGTGACAAAGAAAGACGATGATGCTGAGTTCTTGATTTGTCGGCCAAACTTTGGTTTTGTTACACGACCACAGCAACACACTCCCAAGAAACGGCACCCCAAGAACAAGCGGGCTATGGGGATTAACTTGTTGGATCGAGAGGGAAATATCTGCAGTGATGATAAGCTTCCAAGTCAGGGTTGCTTGGTTGGTGAATACAATAATCTTTTGCTGCAGTTGTATCAGCTGCTGTTCGATTTAAAAGAGCTAATGGAGCTTTGTGGCCAAGCTGATAAGATCCAGAGTGAGGTGTTCCTTAAAAAGGCAATGAAAAAAGCTTGCAGAGATTCTGATGATGCTGTTGCAGACAT-AGT-GTTTCAGGCCCTAAAGGTAGATGGTTTCATTCTGAGGCTATTAAGGTATCTGAAGAGCCAATTCAATTTTTGCCGGACCCAGGCATGGAAGATAAGGAATGAGATATTGAGAATTGGTGGCTCTGACGAGATGCAGCAGGGCGTAAAGGTTGATACGACTCGGGTCATAGAGAACACTGCTAGCACCGTCGACAGCGAGACGCCCGTAGAGCAAAAGAGGAGAAAGAAGGTGGAAACGGAGTATGTCCTCGGTGGGAAGGATCTAGAGTTTATCTTGTCATACGAGGACGATGAACTTGAGACATTTGATGAGGATATGCTCAAGGACCAGGCAATGGTCCGGCAACAGATTGAGAATTTTGGCTATGGTTTCCTCCATAGCTGGAGGGAAGTTATCTGCACTGATAGTGAAGAAGAAGATGACCCCGTGTCCGATGATGATGATGATGATGAACAAGATGACTTCTTCACCAATGATGATGATGATGACCAGCAAAATGTCGACCAAATGGATAAGAACATGTATGC]

[+] EMBL AY224587             [GTGATGGCTTGTCGTGTCGCCGGCGGCGGCGGCGGCGGCGGGGGTTGGGTTTCCTCCGCCGCTTCGTCTCGGTGGCGAGGCCGACGGCCCATTGGGGCCCAATGGGGAAGGCCCATCCCCCGTGGCGGCTTCCCGGCCACGCCAACGCCTTCTTCTTCTGATGAACTCTCCCTGGCAACTGGGGCCCGCACCGACTCGCCCAACGGAATGGGGGGTTCGTTCGGATGGTTGGAGTTTCTCTTATCGACCTCGCACCCGTGCGAGGATGATGCGGCGGAGGAGCTTCCCGTCGAGCCGCCGGTGGCGGCGATGGATGCCGCCCATGACGGCCGCGATGAGGTGCGGGGAGAAGTCCCCTCCGAGCCGTCGGAAGTACTCGCTGGAGAGGAGGAGGCGGCGATGGATGCCGCCCATGACGGCCGAGGCGAGGTCCGGGGAGAGGTCACCTTCGAGCGGGCGATCGGTGCCTCCTCCCGTGCGGGTTACGAAGGCATCAAGCTGGGGGAGGAGCCCTCCCTCAAACCGGCGATGGTGGGCGCGCCCGAGATTAAGATGATCGAGATAGCAGAGGCCTCCTCTGTTGCCCAGTGGGACTTGTTGGCGGGGACGGAGGATTGCAGCCCTGAGATTAACCCGAAGATTGTCGACCTCCAGCAGCAGCAGCAGGAGGCCTCTCTCCTTCCTGATGAGGTCATCTCTGAGGCAGACGCGTCAATCTTGGCGCAGTATTCATCGGTGACAAAGAAAGACGATGATGCTGAGTTCTTGATTTGTCGGCCAAACTTTGGTTTTGTTACACGACCACAGCAACACACTCCCAAGAAACGGCACCCCAAGAACAAGCGGGCTATGGGGATTAACTTGTTGGATCGAGAGGGAAATATCTGCAGTGATGATAAGCTTCCAAGTCAGGGTTGCTTGGTTGGTGAATACAATAATCTTTTGCTGCAGTTGTATCAGCTGCTGTTCGATTTAAAAGAGCTAATGGAGCTTTGTGGCCAAGCTGATAAGATCCAGAGTGAGGTGTTCCTTAAAAAGGCAATGAAAAAAGCTTGCAGAGATTCTGATGATGCTGTTGCAGACAT AGT GTTTCAGGCCCTAAAGGTAGATGGTTTCATTCTGAGGCTATTAAGGTATCTGAAGAGCCAATTCAATTTTTGCCGGACCCAGGCATGGAAGATAAGGAATGAGATATTGAGAATTGGTGGCTCTGACGAGATGCAGCAGGGCGTAAAGGTTGATACGACTCGGGTCATAGAGAACACTGCTAGCACCGTCGACAGCGAGACGCCCGTAGAGCAAAAGAGGAGAAAGAAGGTGGAAACGGAGTATGTCCTCGGTGGGAAGGATCTAGAGTTTATCTTGTCATACGAGGACGATGAACTTGAGACATTTGATGAGGATATGCTCAAGGACCAGGCAATGGTCCGGCAACAGATTGAGAATTTTGGCTATGGTTTCCTCCATAGCTGGAGGGAAGTTATCTGCACTGATAGTGAAGAAGAAGATGACCCCGTGTCCGATGATGATGATGATGATGAACAAGATGACTTCTTCACCAATGATGATGATGATGACCAGCAAAATGTCGACCAAATGGATAAGAACATGTATGC]
[+] EMBL C72814               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCTCTGAGGCAGACGCGTCAATCTTGGCGCAGTATTCATCGGTGACAAAGAAAGACGATGATGCTGAGTTCTTGATTTGTCGGCCAAACTTTGGTTTTGTTACACGACCACAGCAACACACTCCCAAGAAACGGCACCCCAAGAACAAGCGGGCTATGGGGATTAACTTGTTGGATCGAGAGGGAAATATCTGCAGTGATGATAAGCTTCCAAGTCAGGGTTGCTTGGTTGGTGAATACAATAATCTTTTGCTGCAGTTGTATCAGCTGCTGTTCGATTTAAAAGAGCTAATGGAGCTTTGTGGCCAAGCTGATAAGATCCAGAGTGAGGTGTTCCTTAAAAAGGCAATGAAAAAAGCTTGCAGAGATTCTGATGATGCTGTTGCAGACATAAGTGGTTTCAGGNCCTAAAGGTAGATGGGTTCA TCTGAGGCTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_1652#0 GTGATGGCTTGTCGTGTCGCCGGCGGCGGCGGCGGCGGCGGGGGTTGGGTTTCCTCCGCC GCTTCGTCTCGGTGGCGAGGCCGACGGCCCATTGGGGCCCAATGGGGAAGGCCCATCCCC CGTGGCGGCTTCCCGGCCACGCCAACGCCTTCTTCTTCTGATGAACTCTCCCTGGCAACT GGGGCCCGCACCGACTCGCCCAACGGAATGGGGGGTTCGTTCGGATGGTTGGAGTTTCTC TTATCGACCTCGCACCCGTGCGAGGATGATGCGGCGGAGGAGCTTCCCGTCGAGCCGCCG GTGGCGGCGATGGATGCCGCCCATGACGGCCGCGATGAGGTGCGGGGAGAAGTCCCCTCC GAGCCGTCGGAAGTACTCGCTGGAGAGGAGGAGGCGGCGATGGATGCCGCCCATGACGGC CGAGGCGAGGTCCGGGGAGAGGTCACCTTCGAGCGGGCGATCGGTGCCTCCTCCCGTGCG GGTTACGAAGGCATCAAGCTGGGGGAGGAGCCCTCCCTCAAACCGGCGATGGTGGGCGCG CCCGAGATTAAGATGATCGAGATAGCAGAGGCCTCCTCTGTTGCCCAGTGGGACTTGTTG GCGGGGACGGAGGATTGCAGCCCTGAGATTAACCCGAAGATTGTCGACCTCCAGCAGCAG CAGCAGGAGGCCTCTCTCCTTCCTGATGAGGTCATCTCTGAGGCAGACGCGTCAATCTTG GCGCAGTATTCATCGGTGACAAAGAAAGACGATGATGCTGAGTTCTTGATTTGTCGGCCA AACTTTGGTTTTGTTACACGACCACAGCAACACACTCCCAAGAAACGGCACCCCAAGAAC AAGCGGGCTATGGGGATTAACTTGTTGGATCGAGAGGGAAATATCTGCAGTGATGATAAG CTTCCAAGTCAGGGTTGCTTGGTTGGTGAATACAATAATCTTTTGCTGCAGTTGTATCAG CTGCTGTTCGATTTAAAAGAGCTAATGGAGCTTTGTGGCCAAGCTGATAAGATCCAGAGT GAGGTGTTCCTTAAAAAGGCAATGAAAAAAGCTTGCAGAGATTCTGATGATGCTGTTGCA GACATAGTGTTTCAGGCCCTAAAGGTAGATGGTTTCATTCTGAGGCTATTAAGGTATCTG AAGAGCCAATTCAATTTTTGCCGGACCCAGGCATGGAAGATAAGGAATGAGATATTGAGA ATTGGTGGCTCTGACGAGATGCAGCAGGGCGTAAAGGTTGATACGACTCGGGTCATAGAG AACACTGCTAGCACCGTCGACAGCGAGACGCCCGTAGAGCAAAAGAGGAGAAAGAAGGTG GAAACGGAGTATGTCCTCGGTGGGAAGGATCTAGAGTTTATCTTGTCATACGAGGACGAT GAACTTGAGACATTTGATGAGGATATGCTCAAGGACCAGGCAATGGTCCGGCAACAGATT GAGAATTTTGGCTATGGTTTCCTCCATAGCTGGAGGGAAGTTATCTGCACTGATAGTGAA GAAGAAGATGACCCCGTGTCCGATGATGATGATGATGATGAACAAGATGACTTCTTCACC AATGATGATGATGATGACCAGCAAAATGTCGACCAAATGGATAAGAACATGTATGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)