These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [AGCGCGCAGAATGCAATGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGCGGAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGCATGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCGCGCTCTTCGCGTCGCTCAACGCCATCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTGTTCTTCTTTCTCCTGGCTCCTGCCATGATTNCAA] [+] EMBL AU161727 [AGCGCGCAGAATGCAATGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGCGGAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGCATGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCGCGCTCTTCGCGTCGCTCAACGCCATCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTGTTCTTCTTTCTCCTGGCTCCTGCCATGATTNCAA] consensusID : consensus_1657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGCGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGCGTAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNCAGNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGGCATCCTCCTCGGT] [+] EMBL AU033288 [AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGCGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGCGTAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNCAGNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGGCATCCTCCTCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1657#0 AGCGCGCAGAATGCAA-TGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGT 59 consensus_1657#1 AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGT 60 *********** **** ******************************************* consensus_1657#0 CAAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGC 119 consensus_1657#1 CAAGATGAGGCCGGCG-CGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGC 119 **************** ******************************* *********** consensus_1657#0 GGAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGC 179 consensus_1657#1 GTAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNC 179 * ***************** ********************** *** ********* * * consensus_1657#0 ATGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCG-CGCTCTTCGCGTCGCTCAACGC 238 consensus_1657#1 AGNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGG 239 * ** ** **** ** ******************** ** ******* ********** consensus_1657#0 CATCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTG 298 consensus_1657#1 CATCCTCCTCGGT----------------------------------------------- 252 ************* consensus_1657#0 TTCTTCTTTCTCCTGGCTCCTGCCATGATTNCAA 332 consensus_1657#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||