cluster # 1657

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Oryza sativa
cluster # 1657 cluster # 1657 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1657#0 length = 332 sequences # 1

consensus_1657#1 length = 252 sequences # 1

consensusID : consensus_1657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence

                              [AGCGCGCAGAATGCAATGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGCGGAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGCATGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCGCGCTCTTCGCGTCGCTCAACGCCATCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTGTTCTTCTTTCTCCTGGCTCCTGCCATGATTNCAA]

[+] EMBL AU161727             [AGCGCGCAGAATGCAATGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGCGGAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGCATGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCGCGCTCTTCGCGTCGCTCAACGCCATCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTGTTCTTCTTTCTCCTGGCTCCTGCCATGATTNCAA]




>consensus_1657#0
AGCGCGCAGAATGCAATGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTC
AAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGCG
GAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGCA
TGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCGCGCTCTTCGCGTCGCTCAACGCCA
TCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTGTT
CTTCTTTCTCCTGGCTCCTGCCATGATTNCAA

consensusID : consensus_1657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGCGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGCGTAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNCAGNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGGCATCCTCCTCGGT]

[+] EMBL AU033288             [AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGCGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGCGTAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNCAGNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGGCATCCTCCTCGGT]




>consensus_1657#1
AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGT
CAAGATGAGGCCGGCGCGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGCG
TAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNCA
GNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGGC
ATCCTCCTCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1657#0      AGCGCGCAGAATGCAA-TGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGT 59
consensus_1657#1      AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGT 60
                      *********** **** *******************************************

consensus_1657#0      CAAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGC 119
consensus_1657#1      CAAGATGAGGCCGGCG-CGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGC 119
                      **************** ******************************* ***********

consensus_1657#0      GGAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGC 179
consensus_1657#1      GTAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNC 179
                      * ***************** ********************** *** ********* * *

consensus_1657#0      ATGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCG-CGCTCTTCGCGTCGCTCAACGC 238
consensus_1657#1      AGNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGG 239
                      *  ** ** **** ** ******************** ** ******* ********** 

consensus_1657#0      CATCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTG 298
consensus_1657#1      CATCCTCCTCGGT----------------------------------------------- 252
                      *************                                               

consensus_1657#0      TTCTTCTTTCTCCTGGCTCCTGCCATGATTNCAA 332
consensus_1657#1      ----------------------------------