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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1657 cluster # 1657       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1657#0 length = 332 sequences # 1  
consensus_1657#1 length = 252 sequences # 1  

consensusID : consensus_1657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence
                              [AGCGCGCAGAATGCAATGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGCGGAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGCATGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCGCGCTCTTCGCGTCGCTCAACGCCATCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTGTTCTTCTTTCTCCTGGCTCCTGCCATGATTNCAA]

[+] EMBL AU161727             [AGCGCGCAGAATGCAATGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGCGGAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGCATGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCGCGCTCTTCGCGTCGCTCAACGCCATCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTGTTCTTCTTTCTCCTGGCTCCTGCCATGATTNCAA]


>consensus_1657#0 AGCGCGCAGAATGCAATGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTC AAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGCG GAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGCA TGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCGCGCTCTTCGCGTCGCTCAACGCCA TCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTGTT CTTCTTTCTCCTGGCTCCTGCCATGATTNCAA



consensusID : consensus_1657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence
                              [AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGCGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGCGTAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNCAGNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGGCATCCTCCTCGGT]

[+] EMBL AU033288             [AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGTCAAGATGAGGCCGGCGCGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGCGTAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNCAGNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGGCATCCTCCTCGGT]


>consensus_1657#1 AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGT CAAGATGAGGCCGGCGCGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGCG TAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNCA GNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGGC ATCCTCCTCGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1657#0      AGCGCGCAGAATGCAA-TGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGT 59
consensus_1657#1      AGCGCGCAGAANGCAAGTGCTGCAGCTGCTTGCCACAACATCAACGCCCCTTTCCCCTGT 60
                      *********** **** *******************************************

consensus_1657#0      CAAGATGAGGCCGGCGGCGGCGGCAATGGCGACGAAGAGCGAGTACCGGAGGATGGAGGC 119
consensus_1657#1      CAAGATGAGGCCGGCG-CGGCGGCAATGGCGACGAAGAGCGAGTACCGTAGGATGGAGGC 119
                      **************** ******************************* ***********

consensus_1657#0      GGAGGAGGAGGAGGAGCTGGACAAGGAGGAGTGGGCGCGCAGGGCGGAGGCGCACGCCGC 179
consensus_1657#1      GTAGGAGGAGGAGGAGCTGTACAAGGAGGAGTGGGCGCGCAGNGCGNAGGCGCACGNCNC 179
                      * ***************** ********************** *** ********* * *

consensus_1657#0      ATGTCNGGAAGCGGCGGGAGATACGTCTTCACCTGCG-CGCTCTTCGCGTCGCTCAACGC 238
consensus_1657#1      AGNTCAGGGAGCGTCGTGAGATACGTCTTCACCTGCGGCGNTCTTCGCNTCGCTCAACGG 239
                      *  ** ** **** ** ******************** ** ******* ********** 

consensus_1657#0      CATCCTCCTCGGTTACGGTCAGTCTCCCTCTCCTGCTCGATCGATCTCACCTCCTCCTTG 298
consensus_1657#1      CATCCTCCTCGGT----------------------------------------------- 252
                      *************                                               

consensus_1657#0      TTCTTCTTTCTCCTGGCTCCTGCCATGATTNCAA 332
consensus_1657#1      ----------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)