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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1336 fasta sequence
[CTACCCCTCCGCCACAGCGTCCACACCCGCGCCGCCGCCGCCCTCACCCTCGCCGCCGCGCATCCCGCGGTCCCACCGTCGCCGATTCCACCGCTGCCACGGACAACCCCGCCGCCCCTTTCCTTCCTCGCCGTGGGAGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGGCCGCCCTTCCCCGATGGGGGGCAGCGGCGTAGGCGCCGCCATCAGCCGCCGTACGTATGTGAGCGGCGCCTGCGCACGCCTCCAGCTGGTCCGCGCGAGAAGAAGAAGAAGCAGAAGAGAGAAACAGTGGCTTTTTTTTGCTGAACCAGATGCCGATGCAGTGACGATTCGTTGGCCGAGGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATTTCGATTTTCATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAGTGGCATATAATGACGGGTGGATCAGGTGTTGTGGTGCTAGACAATGGGGGTGGTCTTCTGAAGGCTGGATTTGGTGGGGACATGAATCCGACTGCTGTTGTCCCCAACTGTATGGCCAAGCCCCCTGGTTCCAAGAAATGGCTAGTTGCTGACCAGCTGCAGGCACAAGATGTTGATGTTACTGGCATGACATTGAGGCGTCCTATTGATCGTGGCTATCTCATCAATCAAGAAGTGCAACGGGAGGTGTGGGAGCGGGTTATACGCAACCTACTGCAGGTGGATCCTAACAACTCATCGTTGCTACTGGTGGAACCACAGTTCAACCCTCCAGCACTGCAGCATGCAACCGATGAGCTTGTTTTTGAGGAGCTTGGTTTCAAATCTCTTTGTGTTGCAGATGCCCCTTCCCTTGTTCACCTTTATGAGGCTAGCCGCCAGCCATCGCTGTTTCGAGCTCAATGTAGCCTTGTTGTTGACTGTGGCTTCTCTTTCACTCATGCATCTCCCGTGCTTCAAAACTTTACACTGAATTATGCTGTGCGGCGCATGGACCTTGGTGGAAAGGCCCTCACAAACTATCTCAAAGAGCTCATTTCATATCGCTCCCTTAATGTCATGGATGAAACACTCCTCATTGATGATGCAAAGGAAAAACTATGCTTTGTATCCCTTGATGTCCCTGGTGATCTTCGTCTTGCCAGGTTATCATCTAATGACAACCCTTTTAGATGCTCCTACATTCTCCCTGATGGTATAACATACAAGAAAGGGTTTGTGAAGGACTTGGATGAGGCATGCAGATACAGCTCTCTGCCTGCTAATGGAGAATCGGTTAGAAAGGATAGTTCTGACAGCGATAGGAGC]
[+] EMBL AK068395 [CTACCCCTCCGCCACAGCGTCCACACCCGCGCCGCCGCCGCCCTCACCCTCGCCGCCGCGCATCCCGCGGTCCCACCGTCGCCGATTCCACCGCTGCCACGGACAACCCCGCCGCCCCTTTCCTTCCTCGCCGTGGGAGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGGCCGCCCTTCCCCGATGGGGGGCAGCGGCGTAGGCGCCGCCATCAGCCGCCGTACGTATGTGAGCGGCGCCTGCGCACGCCTCCAGCTGGTCCGCGCGAGAAGAAGAAGAAGCAGAAGAGAGAAACAGTGGCTTTTTTTTGCTGAACCAGATGCCGATGCAGTGACGATTCGTTGGCCGAGGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATTTCGATTTTCATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAGTGGCATATAATGACGGGTGGATCAGGTGTTGTGGTGCTAGACAATGGGGGTGGTCTTCTGAAGGCTGGATTTGGTGGGGACATGAATCCGACTGCTGTTGTCCCCAACTGTATGGCCAAGCCCCCTGGTTCCAAGAAATGGCTAGTTGCTGACCAGCTGCAGGCACAAGATGTTGATGTTACTGGCATGACATTGAGGCGTCCTATTGATCGTGGCTATCTCATCAATCAAGAAGTGCAACGGGAGGTGTGGGAGCGGGTTATACGCAACCTACTGCAGGTGGATCCTAACAACTCATCGTTGCTACTGGTGGAACCACAGTTCAACCCTCCAGCACTGCAGCATGCAACCGATGAGCTTGTTTTTGAGGAGCTTGGTTTCAAATCTCTTTGTGTTGCAGATGCCCCTTCCCTTGTTCACCTTTATGAGGCTAGCCGCCAGCCATCGCTGTTTCGAGCTCAATGTAGCCTTGTTGTTGACTGTGGCTTCTCTTTCACTCATGCATCTCCCGTGCTTCAAAACTTTACACTGAATTATGCTGTGCGGCGCATGGACCTTGGTGGAAAGGCCCTCACAAACTATCTCAAAGAGCTCATTTCATATCGCTCCCTTAATGTCATGGATGAAACACTCCTCATTGATGATGCAAAGGAAAAACTATGCTTTGTATCCCTTGATGTCCCTGGTGATCTTCGTCTTGCCAGGTTATCATCTAATGACAACCCTTTTAGATGCTCCTACATTCTCCCTGATGGTATAACATACAAGAAAGGGTTTGTGAAGGACTTGGATGAGGCATGCAGATACAGCTCTCTGCCTGCTAATGGAGAATCGGTTAGAAAGGATAGTTCTGACAGCGATAGGAGC]
consensusID : consensus_167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence
[AGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGGCCGCCCTTCCCCGATGGGGGCAGCGNTGTAGGCGCCGACANTCAGCCGCCGTACGTATGTAAGNGGCGCCTGCNNACGCCTCCAGCTGGTCCGCGCGANTTTTGCTGAACCANATGCCGATGCAGTNACGATTCGTTGGCCGAGGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATTTCGATTTTNATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAAGTG]
[+] EMBL C27308 [AGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGGCCGCCCTTCCCCGATGGGGGCAGCGNTGTAGGCGCCGACANTCAGCCGCCGTACGTATGTAAGNGGCGCCTGCNNACGCCTCCAGCTGGTCCGCGCGANTTTTGCTGAACCANATGCCGATGCAGTNACGATTCGTTGGCCGAGGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATTTCGATTTTNATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_167#0 CTACCCCTCCGCCACAGCGTCCACACCCGCGCCGCCGCCGCCCTCACCCTCGCCGCCGCG 60
consensus_167#1 ------------------------------------------------------------
consensus_167#0 CATCCCGCGGTCCCACCGTCGCCGATTCCACCGCTGCCACGGACAACCCCGCCGCCCCTT 120
consensus_167#1 ------------------------------------------------------------
consensus_167#0 TCCTTCCTCGCCGTGGGAGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGG 180
consensus_167#1 -----------------AGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGG 43
*******************************************
consensus_167#0 CCGCCCTTCCCCGATGGGGGGCAGCGGCGTAGGCGCCGCCAT-CAGCCGCCGTACGTATG 239
consensus_167#1 CCGCCCTTCCCCGATGGGGG-CAGCGNTGTAGGCGCCGACANTCAGCCGCCGTACGTATG 102
******************** ***** ********** ** *****************
consensus_167#0 TGAGCGGCGCCTGCGCACGCCTCCAGCTGGTCCGCGCGAGAAGAAGAAGAAGCAGAAGAG 299
consensus_167#1 TAAGNGGCGCCTGCNNACGCCTCCAGCTGGTCCGCGCGAN-------------------- 142
* ** ********* ***********************
consensus_167#0 AGAAACAGTGGCTTTTTTTTGCTGAACCAGATGCCGATGCAGTGACGATTCGTTGGCCGA 359
consensus_167#1 ----------------TTTTGCTGAACCANATGCCGATGCAGTNACGATTCGTTGGCCGA 186
************* ************* ****************
consensus_167#0 GGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATT 419
consensus_167#1 GGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATT 246
************************************************************
consensus_167#0 TCGATTTTCATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAGTGGCATATAA 479
consensus_167#1 TCGATTTTNATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAAGTG------- 299
******** **************************************** *
consensus_167#0 TGACGGGTGGATCAGGTGTTGTGGTGCTAGACAATGGGGGTGGTCTTCTGAAGGCTGGAT 539
consensus_167#1 ------------------------------------------------------------
consensus_167#0 TTGGTGGGGACATGAATCCGACTGCTGTTGTCCCCAACTGTATGGCCAAGCCCCCTGGTT 599
consensus_167#1 ------------------------------------------------------------
consensus_167#0 CCAAGAAATGGCTAGTTGCTGACCAGCTGCAGGCACAAGATGTTGATGTTACTGGCATGA 659
consensus_167#1 ------------------------------------------------------------
consensus_167#0 CATTGAGGCGTCCTATTGATCGTGGCTATCTCATCAATCAAGAAGTGCAACGGGAGGTGT 719
consensus_167#1 ------------------------------------------------------------
consensus_167#0 GGGAGCGGGTTATACGCAACCTACTGCAGGTGGATCCTAACAACTCATCGTTGCTACTGG 779
consensus_167#1 ------------------------------------------------------------
consensus_167#0 TGGAACCACAGTTCAACCCTCCAGCACTGCAGCATGCAACCGATGAGCTTGTTTTTGAGG 839
consensus_167#1 ------------------------------------------------------------
consensus_167#0 AGCTTGGTTTCAAATCTCTTTGTGTTGCAGATGCCCCTTCCCTTGTTCACCTTTATGAGG 899
consensus_167#1 ------------------------------------------------------------
consensus_167#0 CTAGCCGCCAGCCATCGCTGTTTCGAGCTCAATGTAGCCTTGTTGTTGACTGTGGCTTCT 959
consensus_167#1 ------------------------------------------------------------
consensus_167#0 CTTTCACTCATGCATCTCCCGTGCTTCAAAACTTTACACTGAATTATGCTGTGCGGCGCA 1019
consensus_167#1 ------------------------------------------------------------
consensus_167#0 TGGACCTTGGTGGAAAGGCCCTCACAAACTATCTCAAAGAGCTCATTTCATATCGCTCCC 1079
consensus_167#1 ------------------------------------------------------------
consensus_167#0 TTAATGTCATGGATGAAACACTCCTCATTGATGATGCAAAGGAAAAACTATGCTTTGTAT 1139
consensus_167#1 ------------------------------------------------------------
consensus_167#0 CCCTTGATGTCCCTGGTGATCTTCGTCTTGCCAGGTTATCATCTAATGACAACCCTTTTA 1199
consensus_167#1 ------------------------------------------------------------
consensus_167#0 GATGCTCCTACATTCTCCCTGATGGTATAACATACAAGAAAGGGTTTGTGAAGGACTTGG 1259
consensus_167#1 ------------------------------------------------------------
consensus_167#0 ATGAGGCATGCAGATACAGCTCTCTGCCTGCTAATGGAGAATCGGTTAGAAAGGATAGTT 1319
consensus_167#1 ------------------------------------------------------------
consensus_167#0 CTGACAGCGATAGGAGC 1336
consensus_167#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||