These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1336 fasta sequence [CTACCCCTCCGCCACAGCGTCCACACCCGCGCCGCCGCCGCCCTCACCCTCGCCGCCGCGCATCCCGCGGTCCCACCGTCGCCGATTCCACCGCTGCCACGGACAACCCCGCCGCCCCTTTCCTTCCTCGCCGTGGGAGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGGCCGCCCTTCCCCGATGGGGGGCAGCGGCGTAGGCGCCGCCATCAGCCGCCGTACGTATGTGAGCGGCGCCTGCGCACGCCTCCAGCTGGTCCGCGCGAGAAGAAGAAGAAGCAGAAGAGAGAAACAGTGGCTTTTTTTTGCTGAACCAGATGCCGATGCAGTGACGATTCGTTGGCCGAGGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATTTCGATTTTCATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAGTGGCATATAATGACGGGTGGATCAGGTGTTGTGGTGCTAGACAATGGGGGTGGTCTTCTGAAGGCTGGATTTGGTGGGGACATGAATCCGACTGCTGTTGTCCCCAACTGTATGGCCAAGCCCCCTGGTTCCAAGAAATGGCTAGTTGCTGACCAGCTGCAGGCACAAGATGTTGATGTTACTGGCATGACATTGAGGCGTCCTATTGATCGTGGCTATCTCATCAATCAAGAAGTGCAACGGGAGGTGTGGGAGCGGGTTATACGCAACCTACTGCAGGTGGATCCTAACAACTCATCGTTGCTACTGGTGGAACCACAGTTCAACCCTCCAGCACTGCAGCATGCAACCGATGAGCTTGTTTTTGAGGAGCTTGGTTTCAAATCTCTTTGTGTTGCAGATGCCCCTTCCCTTGTTCACCTTTATGAGGCTAGCCGCCAGCCATCGCTGTTTCGAGCTCAATGTAGCCTTGTTGTTGACTGTGGCTTCTCTTTCACTCATGCATCTCCCGTGCTTCAAAACTTTACACTGAATTATGCTGTGCGGCGCATGGACCTTGGTGGAAAGGCCCTCACAAACTATCTCAAAGAGCTCATTTCATATCGCTCCCTTAATGTCATGGATGAAACACTCCTCATTGATGATGCAAAGGAAAAACTATGCTTTGTATCCCTTGATGTCCCTGGTGATCTTCGTCTTGCCAGGTTATCATCTAATGACAACCCTTTTAGATGCTCCTACATTCTCCCTGATGGTATAACATACAAGAAAGGGTTTGTGAAGGACTTGGATGAGGCATGCAGATACAGCTCTCTGCCTGCTAATGGAGAATCGGTTAGAAAGGATAGTTCTGACAGCGATAGGAGC] [+] EMBL AK068395 [CTACCCCTCCGCCACAGCGTCCACACCCGCGCCGCCGCCGCCCTCACCCTCGCCGCCGCGCATCCCGCGGTCCCACCGTCGCCGATTCCACCGCTGCCACGGACAACCCCGCCGCCCCTTTCCTTCCTCGCCGTGGGAGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGGCCGCCCTTCCCCGATGGGGGGCAGCGGCGTAGGCGCCGCCATCAGCCGCCGTACGTATGTGAGCGGCGCCTGCGCACGCCTCCAGCTGGTCCGCGCGAGAAGAAGAAGAAGCAGAAGAGAGAAACAGTGGCTTTTTTTTGCTGAACCAGATGCCGATGCAGTGACGATTCGTTGGCCGAGGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATTTCGATTTTCATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAGTGGCATATAATGACGGGTGGATCAGGTGTTGTGGTGCTAGACAATGGGGGTGGTCTTCTGAAGGCTGGATTTGGTGGGGACATGAATCCGACTGCTGTTGTCCCCAACTGTATGGCCAAGCCCCCTGGTTCCAAGAAATGGCTAGTTGCTGACCAGCTGCAGGCACAAGATGTTGATGTTACTGGCATGACATTGAGGCGTCCTATTGATCGTGGCTATCTCATCAATCAAGAAGTGCAACGGGAGGTGTGGGAGCGGGTTATACGCAACCTACTGCAGGTGGATCCTAACAACTCATCGTTGCTACTGGTGGAACCACAGTTCAACCCTCCAGCACTGCAGCATGCAACCGATGAGCTTGTTTTTGAGGAGCTTGGTTTCAAATCTCTTTGTGTTGCAGATGCCCCTTCCCTTGTTCACCTTTATGAGGCTAGCCGCCAGCCATCGCTGTTTCGAGCTCAATGTAGCCTTGTTGTTGACTGTGGCTTCTCTTTCACTCATGCATCTCCCGTGCTTCAAAACTTTACACTGAATTATGCTGTGCGGCGCATGGACCTTGGTGGAAAGGCCCTCACAAACTATCTCAAAGAGCTCATTTCATATCGCTCCCTTAATGTCATGGATGAAACACTCCTCATTGATGATGCAAAGGAAAAACTATGCTTTGTATCCCTTGATGTCCCTGGTGATCTTCGTCTTGCCAGGTTATCATCTAATGACAACCCTTTTAGATGCTCCTACATTCTCCCTGATGGTATAACATACAAGAAAGGGTTTGTGAAGGACTTGGATGAGGCATGCAGATACAGCTCTCTGCCTGCTAATGGAGAATCGGTTAGAAAGGATAGTTCTGACAGCGATAGGAGC] consensusID : consensus_167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [AGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGGCCGCCCTTCCCCGATGGGGGCAGCGNTGTAGGCGCCGACANTCAGCCGCCGTACGTATGTAAGNGGCGCCTGCNNACGCCTCCAGCTGGTCCGCGCGANTTTTGCTGAACCANATGCCGATGCAGTNACGATTCGTTGGCCGAGGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATTTCGATTTTNATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAAGTG] [+] EMBL C27308 [AGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGGCCGCCCTTCCCCGATGGGGGCAGCGNTGTAGGCGCCGACANTCAGCCGCCGTACGTATGTAAGNGGCGCCTGCNNACGCCTCCAGCTGGTCCGCGCGANTTTTGCTGAACCANATGCCGATGCAGTNACGATTCGTTGGCCGAGGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATTTCGATTTTNATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_167#0 CTACCCCTCCGCCACAGCGTCCACACCCGCGCCGCCGCCGCCCTCACCCTCGCCGCCGCG 60 consensus_167#1 ------------------------------------------------------------ consensus_167#0 CATCCCGCGGTCCCACCGTCGCCGATTCCACCGCTGCCACGGACAACCCCGCCGCCCCTT 120 consensus_167#1 ------------------------------------------------------------ consensus_167#0 TCCTTCCTCGCCGTGGGAGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGG 180 consensus_167#1 -----------------AGCGCCCCCCCCCTCCAGGTTGGCTAGCAGCTAGCTCCGCCGG 43 ******************************************* consensus_167#0 CCGCCCTTCCCCGATGGGGGGCAGCGGCGTAGGCGCCGCCAT-CAGCCGCCGTACGTATG 239 consensus_167#1 CCGCCCTTCCCCGATGGGGG-CAGCGNTGTAGGCGCCGACANTCAGCCGCCGTACGTATG 102 ******************** ***** ********** ** ***************** consensus_167#0 TGAGCGGCGCCTGCGCACGCCTCCAGCTGGTCCGCGCGAGAAGAAGAAGAAGCAGAAGAG 299 consensus_167#1 TAAGNGGCGCCTGCNNACGCCTCCAGCTGGTCCGCGCGAN-------------------- 142 * ** ********* *********************** consensus_167#0 AGAAACAGTGGCTTTTTTTTGCTGAACCAGATGCCGATGCAGTGACGATTCGTTGGCCGA 359 consensus_167#1 ----------------TTTTGCTGAACCANATGCCGATGCAGTNACGATTCGTTGGCCGA 186 ************* ************* **************** consensus_167#0 GGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATT 419 consensus_167#1 GGATCGCGTTCTTATAGGCCCGATTTGCAAAGGAGTGCTTGTAAATCCAATCATACCATT 246 ************************************************************ consensus_167#0 TCGATTTTCATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAGTGGCATATAA 479 consensus_167#1 TCGATTTTNATTTGACCAAGGATAGGCAAGAATAGGAGGAAAAAGGAGAAGTG------- 299 ******** **************************************** * consensus_167#0 TGACGGGTGGATCAGGTGTTGTGGTGCTAGACAATGGGGGTGGTCTTCTGAAGGCTGGAT 539 consensus_167#1 ------------------------------------------------------------ consensus_167#0 TTGGTGGGGACATGAATCCGACTGCTGTTGTCCCCAACTGTATGGCCAAGCCCCCTGGTT 599 consensus_167#1 ------------------------------------------------------------ consensus_167#0 CCAAGAAATGGCTAGTTGCTGACCAGCTGCAGGCACAAGATGTTGATGTTACTGGCATGA 659 consensus_167#1 ------------------------------------------------------------ consensus_167#0 CATTGAGGCGTCCTATTGATCGTGGCTATCTCATCAATCAAGAAGTGCAACGGGAGGTGT 719 consensus_167#1 ------------------------------------------------------------ consensus_167#0 GGGAGCGGGTTATACGCAACCTACTGCAGGTGGATCCTAACAACTCATCGTTGCTACTGG 779 consensus_167#1 ------------------------------------------------------------ consensus_167#0 TGGAACCACAGTTCAACCCTCCAGCACTGCAGCATGCAACCGATGAGCTTGTTTTTGAGG 839 consensus_167#1 ------------------------------------------------------------ consensus_167#0 AGCTTGGTTTCAAATCTCTTTGTGTTGCAGATGCCCCTTCCCTTGTTCACCTTTATGAGG 899 consensus_167#1 ------------------------------------------------------------ consensus_167#0 CTAGCCGCCAGCCATCGCTGTTTCGAGCTCAATGTAGCCTTGTTGTTGACTGTGGCTTCT 959 consensus_167#1 ------------------------------------------------------------ consensus_167#0 CTTTCACTCATGCATCTCCCGTGCTTCAAAACTTTACACTGAATTATGCTGTGCGGCGCA 1019 consensus_167#1 ------------------------------------------------------------ consensus_167#0 TGGACCTTGGTGGAAAGGCCCTCACAAACTATCTCAAAGAGCTCATTTCATATCGCTCCC 1079 consensus_167#1 ------------------------------------------------------------ consensus_167#0 TTAATGTCATGGATGAAACACTCCTCATTGATGATGCAAAGGAAAAACTATGCTTTGTAT 1139 consensus_167#1 ------------------------------------------------------------ consensus_167#0 CCCTTGATGTCCCTGGTGATCTTCGTCTTGCCAGGTTATCATCTAATGACAACCCTTTTA 1199 consensus_167#1 ------------------------------------------------------------ consensus_167#0 GATGCTCCTACATTCTCCCTGATGGTATAACATACAAGAAAGGGTTTGTGAAGGACTTGG 1259 consensus_167#1 ------------------------------------------------------------ consensus_167#0 ATGAGGCATGCAGATACAGCTCTCTGCCTGCTAATGGAGAATCGGTTAGAAAGGATAGTT 1319 consensus_167#1 ------------------------------------------------------------ consensus_167#0 CTGACAGCGATAGGAGC 1336 consensus_167#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||