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Oryza sativa
cluster # 1685 cluster # 1685       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1685#0 length = 1381 sequences # 2  

consensusID : consensus_1685#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1381
fasta sequence
                              [TTTTTTTTAAATAGGTAAACTACGCAAATATGCACTCTGTTATCAAGTGCTTAA-TATCCCCCATTTTTGTGAAATGATCAAATCTGACCATGTATATCACATCCATGTTGCCTGAAGATGCGGTATATGTACCCTCTAATTCGCCTGCGCCAAAGAAGGCCCAAAAAAGAGACGAAGGACGTCATCGGTAGGAAAAGCCACCGGCGAGGAAAAAAAACGAGAGAGACGACGACACACGCACCATCAGACGAACACGGACACAGCAACACTGTGAACACACACGCACACCGAAACAAACAGAATAAGCGGCAGCCCGACCGCGTCCGTCGGTGCCAGAGGTATCGATCGGCCAATCAGTCGCGGTAGCACACGAGCAGCGCGACGCAGCGGAAGATGATGCGGAGCCTCGCCTCGTTCCCCCGCGCGACCCTGCAGCCGCCACCGAGCTGGCTGGCGCCCCTGCGCTTCTTCGCCCCGTGGCTCCTGGCGACGACGAGCTCCATGGTCTCCGCGCGGCGCGCGCTCCTTCGTCGCTGGCTCTCTCTGCCGCGAGAGCGAGTGAGCTAGCTAGCAACTACTAGCAAATGCGTCCGCGCGCGAGAGCCAGCTAATTAACCGGGCGCTGGCATGCCAAAAAAACACTTTGACGACGGTGTGGGTGCGCGATGGAGTCGGGGCTGCTTGTTGATGTGTTTATATACCGCGCGGCGCGCGCTAGCTCTGATCGTACGTACACTTGGACGGACGCTGGAAGGTTCAATGTAGGTCGCGCTAGGCGCTAGCTAGGTGCAGTTCCAGTGCAGCTATCGAGCTGTACGTACGTGCAATGCGTACGTACGACGCCTTGACCGTGGGTAGCTCATGGTGAGTTCCGTGCAAACGCATGCACCAACCTGCAAACTTTCCTGGCCCGATCCAGCAACCAGATGGATCATCGATACGTCGGCTCGTCCATCCGGCATTTAAAGTCAAACCGCCTGGTGCTTGATTATTAACGTCCGTTCGTTTTGTTCAGGGAGGTTAGAAACAGTCCAGGATACACGATCGGATCCTGCAGCTAATGTTGCCATCCGCCATCGGCCATCCGATGCCGGGTATGCCGATACAGCCGTCAACCCGCTTGTTGTTCGTCATCGCTGACCAATGCGTCGTATCGCGAGCCATTAATTACCTTTTCTTTGTAGGTTTGCGAATACGTCCTGTCTGCTTCCATGCCTTGACCGAGCGGCAAGAATCTTTTTCTTTCATCTGCAGTGCAGTGCAATCAACCATCGATCTGAACGTTAGTATCAGTTCGTCAGGGTTGCTATGATACACGTCTACTCCCTCCGTCCCAAAAAAAAACAAACTCTGGTTTTCGTGCCCAACGTTTGACCGTCCG]

[-] EMBL CA756981             [TTTTTTTTAAATAGGTAAACTACGCAAATATGCACTCTGTTATCAAGTGCTTAA TATCCCCCATTTTTGTGAAATGATCAAATCTGACCATGTATATCACATCCATGTTGCCTGAAGATGCGGTATATGTACCCTCTAATTCGCCTGCGCCAAAGAAGGCCCAAAAAAGAGACGAAGGACGTCATCGGTAGGAAAAGCCACCGGCGAGGAAAAAAAACGAGAGAGACGACGACACACGCACCATCAGACGAACACGGACACAGCAACACTGTGAACACACACGCACACCGAAACAAACAGAATAAGCGGCAGCCCGACCGCGTCCGTCGGTGCCAGAGGTATCGATCGGCCAATCAGTCGCGGTAGCACACGAGCAGCGCGACGCAGCGGAAGATGATGCGGAGCCTCGCCTCGTTCCCCCGCGCGACCCTGCAGCCGCCACCGAGCTGGCTGGCGCCCCTGCGCTTCTTCGCCCCGTGGCTCCTGGCGACGACGAGCTCCATGGTCTCCGCGCGGCGCGCGCTCCTTCGTCGCTGGCTCTCTCTGCCGCGAGAGCGAGTGAGCTAGCTAGCAACTACTAGCAAATGCGTCCGCGCGCGAGAGCCAGCTAATTAACCGGGCGCTGGCATGCCAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK108063             [                    TACGCAAATATGCACTCTGTTATCAAGTGCTTAATTATTCCCCATTTTTGTGAAATGATCAAATCTGACCATGTATATCACATCCATGTTGCCTGAAGATGCGGTATATGTACCCTCTAATTCGCCTGCGCCAAAGAAGGCCCAAAAAAGAGACGAAGGACGTCATCGGTAGGAAAAGCCACCGGCGAGGAAAAAAAACGAGAGAGACGACGACACACGCACCATCAGACGAACACGGACACAGCAACACTGTGAACACACACGCACACCGAAACAAACAGAATAAGCGGCAGCCCGACCGCGTCCGTCGGTGCCAGAGGTATCGATCGGCCAATCAGTCGCGGTAGCACACGAGCAGCGCGACGCAGCGGAAGATGATGCGGAGCCTCGCCTCGTTCCCCCGCGCGACCCTGCAGCCGCCACCGAGCTGGCTGGCGCCCCTGCGCTTCTTCGCCCCGTGGCTCCTGGCGACGACGAGCTCCATGGTCTCCGCGCGGCGCGCGCTCCTTCGTCGCTGGCTCTCTCTGCCGCGAGAGCGAGTGAGCTAGCTAGCAACTACTAGCAAATGCGTCCGCGCGCGAGAGCCAGCTAATTAACCGGGCGCTGGCATGCCAAAAAAACACTTTGACGACGGTGTGGGTGCGCGATGGAGTCGGGGCTGCTTGTTGATGTGTTTATATACCGCGCGGCGCGCGCTAGCTCTGATCGTACGTACACTTGGACGGACGCTGGAAGGTTCAATGTAGGTCGCGCTAGGCGCTAGCTAGGTGCAGTTCCAGTGCAGCTATCGAGCTGTACGTACGTGCAATGCGTACGTACGACGCCTTGACCGTGGGTAGCTCATGGTGAGTTCCGTGCAAACGCATGCACCAACCTGCAAACTTTCCTGGCCCGATCCAGCAACCAGATGGATCATCGATACGTCGGCTCGTCCATCCGGCATTTAAAGTCAAACCGCCTGGTGCTTGATTATTAACGTCCGTTCGTTTTGTTCAGGGAGGTTAGAAACAGTCCAGGATACACGATCGGATCCTGCAGCTAATGTTGCCATCCGCCATCGGCCATCCGATGCCGGGTATGCCGATACAGCCGTCAACCCGCTTGTTGTTCGTCATCGCTGACCAATGCGTCGTATCGCGAGCCATTAATTACCTTTTCTTTGTAGGTTTGCGAATACGTCCTGTCTGCTTCCATGCCTTGACCGAGCGGCAAGAATCTTTTTCTTTCATCTGCAGTGCAGTGCAATCAACCATCGATCTGAACGTTAGTATCAGTTCGTCAGGGTTGCTATGATACACGTCTACTCCCTCCGTCCCAAAAAAAAACAAACTCTGGTTTTCGTGCCCAACGTTTGACCGTCCG]


>consensus_1685#0 TTTTTTTTAAATAGGTAAACTACGCAAATATGCACTCTGTTATCAAGTGCTTAATATCCC CCATTTTTGTGAAATGATCAAATCTGACCATGTATATCACATCCATGTTGCCTGAAGATG CGGTATATGTACCCTCTAATTCGCCTGCGCCAAAGAAGGCCCAAAAAAGAGACGAAGGAC GTCATCGGTAGGAAAAGCCACCGGCGAGGAAAAAAAACGAGAGAGACGACGACACACGCA CCATCAGACGAACACGGACACAGCAACACTGTGAACACACACGCACACCGAAACAAACAG AATAAGCGGCAGCCCGACCGCGTCCGTCGGTGCCAGAGGTATCGATCGGCCAATCAGTCG CGGTAGCACACGAGCAGCGCGACGCAGCGGAAGATGATGCGGAGCCTCGCCTCGTTCCCC CGCGCGACCCTGCAGCCGCCACCGAGCTGGCTGGCGCCCCTGCGCTTCTTCGCCCCGTGG CTCCTGGCGACGACGAGCTCCATGGTCTCCGCGCGGCGCGCGCTCCTTCGTCGCTGGCTC TCTCTGCCGCGAGAGCGAGTGAGCTAGCTAGCAACTACTAGCAAATGCGTCCGCGCGCGA GAGCCAGCTAATTAACCGGGCGCTGGCATGCCAAAAAAACACTTTGACGACGGTGTGGGT GCGCGATGGAGTCGGGGCTGCTTGTTGATGTGTTTATATACCGCGCGGCGCGCGCTAGCT CTGATCGTACGTACACTTGGACGGACGCTGGAAGGTTCAATGTAGGTCGCGCTAGGCGCT AGCTAGGTGCAGTTCCAGTGCAGCTATCGAGCTGTACGTACGTGCAATGCGTACGTACGA CGCCTTGACCGTGGGTAGCTCATGGTGAGTTCCGTGCAAACGCATGCACCAACCTGCAAA CTTTCCTGGCCCGATCCAGCAACCAGATGGATCATCGATACGTCGGCTCGTCCATCCGGC ATTTAAAGTCAAACCGCCTGGTGCTTGATTATTAACGTCCGTTCGTTTTGTTCAGGGAGG TTAGAAACAGTCCAGGATACACGATCGGATCCTGCAGCTAATGTTGCCATCCGCCATCGG CCATCCGATGCCGGGTATGCCGATACAGCCGTCAACCCGCTTGTTGTTCGTCATCGCTGA CCAATGCGTCGTATCGCGAGCCATTAATTACCTTTTCTTTGTAGGTTTGCGAATACGTCC TGTCTGCTTCCATGCCTTGACCGAGCGGCAAGAATCTTTTTCTTTCATCTGCAGTGCAGT GCAATCAACCATCGATCTGAACGTTAGTATCAGTTCGTCAGGGTTGCTATGATACACGTC TACTCCCTCCGTCCCAAAAAAAAACAAACTCTGGTTTTCGTGCCCAACGTTTGACCGTCC G



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)