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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1688 cluster # 1688       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1688#0 length = 644 sequences # 1  
consensus_1688#1 length = 364 sequences # 1  

consensusID : consensus_1688#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence
                              [GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGACGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTGATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACACCCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAATGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCCCTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCAATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTGGAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT]

[+] EMBL CA753244             [GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGACGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTGATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACACCCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAATGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCCCTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCAATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTGGAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT]


>consensus_1688#0 GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGA CGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGAT CGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGC CGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTG ATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGT GTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACAC CCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAA TGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCC CTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCA ATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTG GAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT



consensusID : consensus_1688#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence
                              [AGAGGCCGAGCCAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCCGGCCATTATTGATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATCAGATCAACCCCCCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760886             [AGAGGCCGAGCCAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCCGGCCATTATTGATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATCAGATCAACCCCCCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_1688#1 AGAGGCCGAGCCAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATC AAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAA CCCGCCGGCGCCGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCC GGCCATTATTGATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACG CGTGAGATGGTGTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATC AGATCAACCCCCCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1688#0      GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGA 60
consensus_1688#1      -------------------------------------------------AGAGGCCGAGC 11
                                                                          * **  * 

consensus_1688#0      CGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGAT 120
consensus_1688#1      CAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATCAAGAGGAAGAT 71
                      * ** ************ ************************ *****************

consensus_1688#0      CGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGC 180
consensus_1688#1      CGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGC 131
                      ************************************************************

consensus_1688#0      CGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTG 240
consensus_1688#1      CGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCCGGCCATTATTG 191
                      ******************** **** ** ************* ** * ********* **

consensus_1688#0      ATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGT 300
consensus_1688#1      ATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACGCGTGAGATGGT 251
                      *************** ** **** ** ********* * *********************

consensus_1688#0      GTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACAC 360
consensus_1688#1      GTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATCAGATCAACCCC 311
                      ************ ***** ** ***** *** ************************ * *

consensus_1688#0      CCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAA 420
consensus_1688#1      CCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- 364
                      *************** * **  **            *             *         

consensus_1688#0      TGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCC 480
consensus_1688#1      ------------------------------------------------------------
                                                                                  

consensus_1688#0      CTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCA 540
consensus_1688#1      ------------------------------------------------------------
                                                                                  

consensus_1688#0      ATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTG 600
consensus_1688#1      ------------------------------------------------------------
                                                                                  

consensus_1688#0      GAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT 644
consensus_1688#1      --------------------------------------------
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)