These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1688#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGACGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTGATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACACCCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAATGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCCCTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCAATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTGGAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT] [+] EMBL CA753244 [GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGACGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTGATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACACCCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAATGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCCCTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCAATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTGGAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT] consensusID : consensus_1688#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [AGAGGCCGAGCCAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCCGGCCATTATTGATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATCAGATCAACCCCCCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760886 [AGAGGCCGAGCCAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCCGGCCATTATTGATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATCAGATCAACCCCCCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1688#0 GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGA 60 consensus_1688#1 -------------------------------------------------AGAGGCCGAGC 11 * ** * consensus_1688#0 CGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGAT 120 consensus_1688#1 CAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATCAAGAGGAAGAT 71 * ** ************ ************************ ***************** consensus_1688#0 CGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGC 180 consensus_1688#1 CGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGC 131 ************************************************************ consensus_1688#0 CGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTG 240 consensus_1688#1 CGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCCGGCCATTATTG 191 ******************** **** ** ************* ** * ********* ** consensus_1688#0 ATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGT 300 consensus_1688#1 ATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACGCGTGAGATGGT 251 *************** ** **** ** ********* * ********************* consensus_1688#0 GTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACAC 360 consensus_1688#1 GTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATCAGATCAACCCC 311 ************ ***** ** ***** *** ************************ * * consensus_1688#0 CCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAA 420 consensus_1688#1 CCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- 364 *************** * ** ** * * consensus_1688#0 TGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCC 480 consensus_1688#1 ------------------------------------------------------------ consensus_1688#0 CTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCA 540 consensus_1688#1 ------------------------------------------------------------ consensus_1688#0 ATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTG 600 consensus_1688#1 ------------------------------------------------------------ consensus_1688#0 GAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT 644 consensus_1688#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||