cluster # 1688

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Oryza sativa
cluster # 1688 cluster # 1688 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1688#0 length = 644 sequences # 1

consensus_1688#1 length = 364 sequences # 1

consensusID : consensus_1688#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGACGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTGATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACACCCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAATGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCCCTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCAATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTGGAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT]

[+] EMBL CA753244             [GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGACGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTGATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACACCCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAATGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCCCTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCAATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTGGAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT]




>consensus_1688#0
GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGA
CGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGAT
CGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGC
CGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTG
ATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGT
GTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACAC
CCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAA
TGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCC
CTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCA
ATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTG
GAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT

consensusID : consensus_1688#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [AGAGGCCGAGCCAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCCGGCCATTATTGATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATCAGATCAACCCCCCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760886             [AGAGGCCGAGCCAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGCCGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCCGGCCATTATTGATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACGCGTGAGATGGTGTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATCAGATCAACCCCCCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_1688#1
AGAGGCCGAGCCAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATC
AAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAA
CCCGCCGGCGCCGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCC
GGCCATTATTGATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACG
CGTGAGATGGTGTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATC
AGATCAACCCCCCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1688#0      GTTTTTCTCTTGTGCAGGGAGCGAGCGAGCGGGCGACATGGACGGGGGCCAGGACCACGA 60
consensus_1688#1      -------------------------------------------------AGAGGCCGAGC 11
                                                                          * **  * 

consensus_1688#0      CGAGAGGAAGAAGAGCCACGGCAACCCATACCCCAGGAGGGGCGACATCAAGAGGAAGAT 120
consensus_1688#1      CAAGGGGAAGAAGAGCCCCGGCAACCCATACCCCAGGAGGGGGGACATCAAGAGGAAGAT 71
                      * ** ************ ************************ *****************

consensus_1688#0      CGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGC 180
consensus_1688#1      CGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCCCGGCGACGAGTAAACCCGCCGGCGC 131
                      ************************************************************

consensus_1688#0      CGGCAACGGAGATGGCGGGGACGATGCCGCCGCCGCCGGGAGCTACTACGGCCATTACTG 240
consensus_1688#1      CGGCAACGGAGATGGCGGGGGCGATCCCCCCGCCGCCGGGAGTTATTCCGGCCATTATTG 191
                      ******************** **** ** ************* ** * ********* **

consensus_1688#0      ATGCGAGTGCGTGGGACCCTGTGCGTATCAGTTGTAGAGAGGGAGCACGCGTGAGATGGT 300
consensus_1688#1      ATGCGAGTGCGTGGGCCCGTGTGGGTTTCAGTTGTAAAAAGGGAGCACGCGTGAGATGGT 251
                      *************** ** **** ** ********* * *********************

consensus_1688#0      GTGTAGAGCTCGACCTGTCCGGTGTGTCAATCCCCAATAATTATTGATCAGATCAAACAC 360
consensus_1688#1      GTGTAGAGCTCGCCCTGTTCGATGTGTTAATTCCCAATAATTATTGATCAGATCAACCCC 311
                      ************ ***** ** ***** *** ************************ * *

consensus_1688#0      CCGTGTGATGCTGTAATCTACTAATCTCGTGTGGTCACGTGTGTGGCCTGATCTAATGAA 420
consensus_1688#1      CCGTGTGATGCTGTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- 364
                      *************** * **  **            *             *         

consensus_1688#0      TGAATCTAGCCATGGCTGTTGCAAAAAAACATCCGCCGGTCTGGGGGGTCCGCCTCATCC 480
consensus_1688#1      ------------------------------------------------------------
                                                                                  

consensus_1688#0      CTGCCTCCTATTCTGGACTGTGCACACCACACAACCACCCCCAGGGGGGGCCTGTACCCA 540
consensus_1688#1      ------------------------------------------------------------
                                                                                  

consensus_1688#0      ATTNCCCTTTTAGGATTCCCTTTACACTCCCCGGGCCTATTTTCACCAATCCCCACCGTG 600
consensus_1688#1      ------------------------------------------------------------
                                                                                  

consensus_1688#0      GAAACCCGCCCTTATCCCAATAAGCCTGGTAGCGATTCCCCTTT 644
consensus_1688#1      --------------------------------------------