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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1089 fasta sequence
[CCAACCTCACACAGTTCACACAACCACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTGAAGCAGCGGCGGAAGGTGGACCACTTCTTCGCCAAGGCCGGCCGCCACGTCAGCTACGCCGCCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGATCGCCGTCGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCA-AGAACCCCTCCCCCGCCGCCGGCGACACCACCA-AGGTCGATGAGGA-GAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG-TGCA-GGCCG-AGGGA-GTGG-CA-GCCA-AGAAC-TGAAG-AAG-ATCGATCGATCGATAT--ACACAGATCATCATACAT-CTCATCATCATCAT---CAGCAGCA-GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA-TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT-AAACAGAGAGAAAATGATATATATATAT-GGAGAGATCGA-CGACATGTATTATT-ATT-GCTATCATCAT-CTGATGAGATTATAATATGAGCAAT-GGAAATATTATTTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAA]
[+] EMBL AK060891 [CCAACCTCACACAGTTCACACAACCACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTGAAGCAGCGGCGGAAGGTGGACCACTTCTTCGCCAAGGCCGGCCGCCACGTCAGCTACGCCGCCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGATCGCCGTCGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCA AGAACCCCTCCCCCGCCGCCGGCGACACCACCA AGGTCGATGAGGA GAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGAAC TGAAG AAG ATCGATCGATCGATAT ACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTAT ]
[+] EMBL AK069514 [ CAACCTCACACAGTTCACACAACCACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTGAAGCAGCGGCGGAAGGTGGACCACTTCTTCGCCAAGGCCGGCCGCCACGTCAGCTACGCCGCCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGATCGCCGTCGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCA AGAACCCCTCCCCCGCCGCCGGCGACACCACCA AGGTCGATGAGGA GAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGAAC TGAAG AAG ATCGATCGATCGATAT ACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAAT GGA ]
[+] EMBL AK105895 [ CACACAGTTCACACAACCACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTGAAGCAGCGGCGGAAGGTGGACCACTTCTTCGCCAAGGCCGGCCGCCACGTCAGCTACGCCGCCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGATCGCCGTCGACGACACCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCA AGAACCCCTCCCCCGCCGCCGGCGACACCACCA AGGTCGATGAGGA GAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGAAC TGAAG AAG ATCGATCGATCGATAT ACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAAT GGAAATA ]
[-] EMBL CB681199 [ CGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGATCGCCGTCGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCA AGAACCCCTCCCCCGCCGCCGGCGACACCACCA AGGTCGATGAGGA GAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCCCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGACC TGAAG AAG ATCGATCGATCGATAT ACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTGTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTCCTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTAGGATATGAGCAAT GGAAATATTATTTATTTCAAACAAAAAAAgg ]
[+] EMBL BI805888 [ nCCTTCGAGGCCCCCCCTCCGCCGCCCATAGGA CCTCCCCCGCCGCCGGCGACTCCTCCA AGGTCGATGAGGAGGAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGAAC TGAAG AAG ATCGATCGATCGATAT ACACAGATCATCATACAT CTCATCATCATCATCAGCAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCACNGC CTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAAT GGNAATATTATTTAaaaa ]
[+] EMBL BI805201 [ GACACCACCATAGGTCGATGAGGA GAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATG ACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA TGG CA GCCACAGAAC TGAAG AAG ATCGATCGATCGATAT AC CAGATCATCATACAT CTCATCATCATCATCAGCAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCCCTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACCGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCCAT GGAAATATTATTTATTTAAAAAAAAAA ]
[+] EMBL AU088715 [ CCACCA AGGTCGATGAGGA GAAGAAGAAGGAGGAGGAGGTCGC NCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGAAC TGAAG AAG ATCGATCGATCGATAT ACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT Aaa ]
[+] EMBL AU174259 [ GTCGATGAGGA GAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGAAC TGAAG AAG ATCGATCGATCGATAT ACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT Aaa aa ]
[+] EMBL AU070469 [ A GAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGAAC TGAAG AAG ATCGATCGATCGATAT ACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGC TTAAATTAATTATTA TAAG TG TACTACTTCCTTTCCTGCTGCTGTT AACAGAGAGAAATGGTTATATATA ]
[-] EMBL BI305839 [ AAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGAAC TGAAG AAG ATCGATCGATCGATATACACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGTTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATG ATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAAT AGAAATATTATT ]
[-] EMBL BI305717 [ AAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGAAC TGAAG AAG ATCGATCGATCGATATACACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGTTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATG ATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAAT AGAAATAT ]
[+] EMBL AU066155 [ AGGAGATGAACAGCAAGGAGGTGCAGG TGCA GGCCG AGGGA GTGG CA GCCA AGAAC TGAAG AAG ATCGATCGATCGATAT ACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAATGGGAAATATTATTT ]
[+] EMBL AU176539 [ GCNGG TGCA GGCCN AGGGA GTGG CA CCCA AAAAC TGAAN AAG ATCGATCGATCGATAT ACCCAGATCATCATACAT TTCATCATCATCAT CAGCAGCA GAAGCAGCAGCCCGAGATTTCCCTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTNTGAATAATCTGCATNTGCATGCA TGCNCTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTNTTGCTGCTGTT AAACAGAGAGAAAATGATNTNTATATAT GGAGAGATCGN CGNCATGTATTATT ATT GCTATCATCATCCTGATGAGATTATAATATGAGCAAT GGAAAT TT TTT TTTAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU097036 [ aggntcgcaAGGTTGCATNGCCGTAGGGA NTGGCCA GCCA AGAAC TGAAGCAAG ATCGATCGATCGATAT ACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCATGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATNTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAAT GGAAATATTATTTATTTAAA ]
[+] EMBL AU096752 [ AGGGANTTGG CATGCCA AGAACTTGAAG AAGNATCGATCGATCGATAT ACACAGATCATCATACATNCTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAAT GGAAATATTATTTATTTAAAAA ]
[+] EMBL AU066202 [ GATAT ACACAGATCATCATACAT CTCATCATCATCAT CAGCAGCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTTAAAACAGAGAG AAATGATATATATATATGGGNGAGATCGACCGACATGTATTATTAATTGGCTATCATCA ]
[+] EMBL AU033146 [ ATCATC CAT CAGCAGCA GNAGCAGCANCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAANCGTTTTATTTGGNTCTGAATAATCTGCANCTGCNNGCA TGCACTNCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAAT GGAAATATTATTTATTTAATTAAAAAA ]
[+] EMBL CB684083 [ ATCAT CCCCATCA GAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGAGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAAT GGAAATA ]
[+] EMBL AU161683 [ CGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCA TGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGAGAGAAAATGATATATATATAT GGNGAGATCGA CGACATGTATTATT ATT GCTATCATCAT CTGATGAGATTATAATATGAGCAAT GGAAATATTATTTATTTAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAA]
[+] EMBL AU095691 [ TAGCTGAGATGATGAGTTATTATTAATTAANCGTTTTATTTGGTTCTGNATNATCTGCATCTGCATGCA TGCACTGCTTTAAATTNATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTT AAACAGNGAGNANATGATATATATATAT GGAGNGATCGA CGACATGTATTATT ATT GCTATCNTCAT CTGATGAGATTATAATATGAGNNAT GGNAATATTATTTATTTANAAAAAAANAAAAA ]
consensusID : consensus_16889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1017 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGAAACCATCCAACCTCACACAGTTCACACAACC-ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG-AAGCAGCGGCGGAAGG-TGGACCA-CTTC-TTCGCC-AAGG-CCGGCC-GCCACG-TC-AGCT-AC-GCCG-CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGA-TCGCCGT-CGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGGCGA-CACCACCAAGGTCGA--TGA-GGAGAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCG-CCGCCGCCA-TTGACGAGATCGAGGGGAAGATG-AAGGAGATGA-ACAGCAAGGAGGTGCAGGTGC-AGGCCGAGGGAGTGGCAGCCAAGA-ACTGAAGAAGATCGATCGATCGATATACACAGATC-ATCATACATCTCATCATCATCAT--CAGCAGCAGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTTAAACAGAGAGAAAATGATATAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK109434 [TTCCTCGAGCACTGTTGGCCTACTGGAAACCATCCAACCTCACACAGTTCACACAACC ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG AAGCAGCGGCGGAAGG TGGACCA CTTC TTCGCC AAGG CCGGCC GCCACG TC AGCT AC GCCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGA TCGCCGT CGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGGCGA CACCACCAAGGTCGA TGA GGAGAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCG CCGCCGCCA TTGACGAGATCGAGGGGAAGATG AAGGAGATGA ACAGCAAGGAGGTGCAGGTGC AGGCCGAGGGAGTGGCAGCCAAGA ACTGAAGAAGATCGATCGATCGATATACACAGATC ATCATACATCTCATCATCATCAT CAGCAGCAGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTTAAACAGAGAGAAAATGATATAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL BE229403 [ cgagCTCACACAGTTCACACAACC ACGAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCMGGCGCCGGCGACGATGACGCTGACGATCCCRGACGACGTGCGGGCGAAGGCGGAGGTGTACGTMGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTTCTKCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG AAGCAGCGGCGGAAGG TGGACCA CTTC TTCGCC AAGG CCGGCC GCCACG TC AKYT AC GCCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGMAAGATCACCGGCGTMAAGGCCAAGGAGCTCCTHATCTGGGTCACCCTCCACG ]
[+] EMBL AU070405 [ CAGTTCACACAACC ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG AAGCAGCGGCGGAAGG TGGACCA CTTC TTCGCC AAGG CCGGCC GCCACG TC AGCT AC GCCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGA TCGCC ]
[+] EMBL OSS15093A [ CACACAACC ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG AAGCAGCGGCGGAAGG TGGACCA CTTC TTCGCC AAGG NCGGCC GGCACG TC AGCT AC GNCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTTCGNAAGATCACCGGCGTCAAGGCCAAGGAGNTTCTCATCTTGGTCA ACTTNACGAGATTCGCCGT CGACGA ACCCCCAACGNAAAGTTAACTTGAAAGn ]
[+] EMBL OSS10319A [ CACACAACC ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTNCCTCTCCGCGACATCATCGAGTNCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTT AAGCAGCNGCGGAAGGTTGGACCANTTTT TTGGCC AA ]
[+] EMBL AU065783 [ CACACAACC ACAAGCTTCAAAGCTCCNTACTACTTCTCCTCNTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCNCANCGGCCTCCTCCCTNTNCGCGACATCATCGAGTNCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG AAGCAGCGGCGGAAGG TNGACCA CTTC ]
[+] EMBL OSS2996A [ CACACAACC ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTNGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG AAGCAAAGGCGGAAGG TGGACCA CTTC TTCGCC AAGG CCGGC ]
[+] EMBL CB683716 [ ACACACCC ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG AAGCAGCGGCGGAAGG TGGACCA CTTC TTCGCC AAGG CCGGCC GCCACG TC AGCT AC GCCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGA TCGCCGT CGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGGCGA CACCACCGAGGTCGA TGA GGAGAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCG CCGCCGCCA TTGACGAGATCGAGGGGAAGATG AAGGAGATGA ACAGCAAGGAGGTGCACGTGC ACGC ]
[+] EMBL CB683684 [ ACACCCCCTTCAAGCTTC AAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACCATCCCGGACGACGTGCGGGC TAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG AAGCAGCGGCGGAAGG TGGACCA CTTC TTCGCC AAGG CCGGCC GCCACG TC AGCT AC GCCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCGCGAGA TCGCCGT CGACGACCCCCCCACCGGCAAGCTCACCTGCGAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGGGCAAGAACCCCTCCCCCGCCGCCGGCTA CACCACCAAGGTCGA TGA GGATAAGAAGAAGGAGGAGGAGGTCGCCGGCGAC ]
[+] EMBL OSS1516A [ CACAACC ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTNCTNCTNGAGGAGACGGGGCTTCCCANCGGCCTTCTTCCTNTTCGNGACATCATCGAGTTCGGCTACGT ]
[+] EMBL OSS1419A [ CACAACC ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTNCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACAT ]
[+] EMBL OSS11694A [ AACC ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTGAAAGCAGCGGCGGAAGG TGGACCANTTTCTTTNGCCAAAGGCCCGGCCNGCCACGTTCAAGTTAACGGCCGNCCGAGGgtntt ]
[+] EMBL CA758670 [ AACC ACAAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCCTCTCCGGCGCCGGCGAGGATGACGCTGACGATCCCGGACGACGTGCGGGCCAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCGCTGCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG AAGCAGCGGCGGAAGG TGGACCA CTTC TTCGCC AAGG CCGGCT GCCACG TC AGCT AC GCCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCAAGAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGA TCGCCGT CGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCGCCCCCGCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGCCGA TGCGGCCAAGATAGAAGTTACTGACGAGAAAAAGGAGGAGGtccc ]
[+] EMBL CB664504 [ ACC ACAAGCCTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGACGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCGGGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTCTCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTG AAGCAGCGGCGGAAGG TGGACCA CTTC TTCGCC AAGG CCGGCC GCCACG TC AGCT AC GCCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGA TCGCCGT CGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGGCGA CACCACCAAGGTCGA TGA GGAGAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCG CCGCCGCCA TTGACGAGATCGAGGGGAAGATG AAGGAGATGA ACAGCAAGGAGGTGCAGGTGC AGGCCGAGGGAGTGGCAGCCAAGA ACTGAAGAAGATCGATCGATCGATATACACAGATC ATCATACATCTCATCATCATCAT CAGCAGCAGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGC ]
[+] EMBL CF325337 [ GAAGG TGGACCA CTTC TTCGCC AAGG CCGGCC GCCACG TC AGCT AC GCCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGA TCGCGTTCCGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGGCGA CACCACCAAGGTCGA TGA GGAGAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCG CCGCCGCCA TTGACGAGATCGAGGGGAAGATG AAGGAGATGA ACAGCAAGGAGGTGCAGGTGC AGGCCGAGGGAGTGGCAGCCAAGA ACTGAAGAAGATCGATCGATCGATATACACAGATC ATCATACATCTCATCATCATCAT CAGCAGCAGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATC ]
[+] EMBL OSS4278A [ C TTCGCC AAGG CCGGCC GCCACG TC AGCT AC GCCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGCTCCTCATCTGGGTCACCCTCCACGAGA TCGCCGT CGACGACCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCNGCCGCCGNCCAAGAACCCCTCCCCCGCCGCCGG GA CACCACCAAGGTCGA TGA GGAGAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGGCGNCG NCGACGCCATTTNACGAGATCNAGGGGAAGATG AAGGAGATGA ACAGCAAGGAGGTGCAGGTTCAAGGCCGAGGGAGTTGCAGCCAAGA ANTTAAGgaa ]
[+] EMBL OSS2532A [ C TTCGCC AAGG CCGGCC GCCACG TC AGCT AC GCCG CCGAGGTCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGNAGCTCCTCATCTGGGTCACCCTCCACGAGA TCGCCGT CGACGNTCCCCCCACCGGCAAGCTCACCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCAAGAACCCCTCCCCCGCNGCCGGGGA CACCACCAAGGTCGA T ]
[+] EMBL AU065813 [ TCCTCATCTGGGTCACCCTCCACGAGA TCGCCGT CGACGACCCCCCCACCGGCAAGCTCACCTGCAA GCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCCCGCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGG GANCACCACCAAGGTCGA TGA GGAGAAGAAGAAGGAGGAGGAGGTCGCCGGCGACG CGCCGCCCGCCGCCA TTGACGAGATCGAGGGGAAGATG AAGGAGATGA ACAGCAAGGAGGTGCAGGTGC AGGCCGAGGGAGTTGCAGCCAAGA ACTTAAGAAGATCGATCGATCGATATACACAGATC ATCATACATCTCATCATCATCAT CAGC ]
[+] EMBL AU161678 [ AGGAGGTCGCCGGCGACGCCGCCG CCGCCGCCA TTGACGAGATCGAGGGGAAGATG AAGGAGATGA ACAGCAAGGAGGTGCAGGTGC AGGCCGAGGGAGTGGCAGCCAAGA ACTGAAGAAGATCGATCGATCGATATACACAGATC ATCATACATCTCATCATCATCAT CAGCAGCAGAAGCAGCAGCACGAGATCTCAC ]
[+] EMBL BI806466 [ CGAGATCGAGGGGAAGATGTAAGGAGANGAGAC GCAAGGAGGT CAGGTGC A GCCGAGGGAGTGGCAACCAAGATACTGAAGAAGATCGATCGATCGATATACACAGATCTATCATACATCTCATCATCATCATCACAGCAGCAGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATT ]
consensusID : consensus_16889#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[CCCCCCCCCGGCAAGTTCACCTGCAAGGCCATTGGGGGCCTTTTCCGCAGCTTCCCCGTCGACGCCTTTGAGGCCCCCCCCCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGGGGACCCCCCCAAGGTTGATGAGGAGAAGAAGAAGGAGGGGGAGGTTGCCGGTGACGCCGCCCCCCCCGCCATTGACGAGATTGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGGTGCAGGCCGAGGGAGTGGCACCCAAGAAGTGAAGAAGATCCATCGATCGATATACACAGATCATCATACATTTCATCATCATCATCAGCAGCAGAAGCAGCAGCCCGAGATTTCCCTATCCTATGGAGATTCAGATGAGCTCGTAGCTGAGATGATGAGTTATTATTAATTAATTGTTTTATTTGGTTCTGAAAAATATGCATTTGCAGGCAGGCAGGGCTTTAAATTAATTATTATTAAGTTGCTGCAGCTTCTTTTTTTTCTCCTGTTAAACAGAGAGAAAATGATATATATATACGGAGAGATGGACGACATGTAGTATTATTGGTATCATCATCTGAGGAGATTATAATATGAGAGGTGGAAATAT]
[-] EMBL CB664505 [CCCCCCCCCGGCAAGTTCACCTGCAAGGCCATTGGGGGCCTTTTCCGCAGCTTCCCCGTCGACGCCTTTGAGGCCCCCCCCCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGGGGACCCCCCCAAGGTTGATGAGGAGAAGAAGAAGGAGGGGGAGGTTGCCGGTGACGCCGCCCCCCCCGCCATTGACGAGATTGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGGTGCAGGCCGAGGGAGTGGCACCCAAGAAGTGAAGAAGATCCATCGATCGATATACACAGATCATCATACATTTCATCATCATCATCAGCAGCAGAAGCAGCAGCCCGAGATTTCCCTATCCTATGGAGATTCAGATGAGCTCGTAGCTGAGATGATGAGTTATTATTAATTAATTGTTTTATTTGGTTCTGAAAAATATGCATTTGCAGGCAGGCAGGGCTTTAAATTAATTATTATTAAGTTGCTGCAGCTTCTTTTTTTTCTCCTGTTAAACAGAGAGAAAATGATATATATATACGGAGAGATGGACGACATGTAGTATTATTGGTATCATCATCTGAGGAGATTATAATATGAGAGGTGGAAATAT]
consensusID : consensus_16889#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[GAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGGTCAGTGCCGAGGGATGCACCAAGAACTGAAGAAGATCGATCGATCGATATACACAGATCATCATACATCTCATCATCATCATCAGCAGCAGCAGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTTAAACAGAGAGAAAATGATATATATATATGGAGAGATCGACGACATGTAAAAAAAAAAGAAA]
[+] EMBL BI807999 [GAGATCGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGGTCAGTGCCGAGGGATGCACCAAGAACTGAAGAAGATCGATCGATCGATATACACAGATCATCATACATCTCATCATCATCATCAGCAGCAGCAGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTTAAACAGAGAGAAAATGATATATATATATGGAGAGATCGACGACATGTAAAAAAAAAAGAAA]
consensusID : consensus_16889#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 367 fasta sequence
[TCCTCCAATCCAATCCAATCCAATNCCAAGCCAAGCCAAGAAAGCCAAGCCAAGCCACCGAAGAATCCTCCACCTTAATCCATTAATTGGGAAGGATTCCAAGGATTGAAGCCTAGTAAGCCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTTAAACAGAGAGAAAATGATATATATATATGGAGAGATCGACGACATGTATTATTATTGCTATCATCATCTGATGAGATTATAATATGAGCAATGGAAATATTATTTATTTAATTATGTTGAAA]
[+] EMBL AU097049 [TCCTCCAATCCAATCCAATCCAATNCCAAGCCAAGCCAAGAAAGCCAAGCCAAGCCACCGAAGAATCCTCCACCTTAATCCATTAATTGGGAAGGATTCCAAGGATTGAAGCCTAGTAAGCCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTTAAACAGAGAGAAAATGATATATATATATGGAGAGATCGACGACATGTATTATTATTGCTATCATCATCTGATGAGATTATAATATGAGCAATGGAAATATTATTTATTTAATTATGTTGAAA]
[+] EMBL CB680293 [ TGAGTCATTATTAATTAATCGTTTTATTTGGTTCTGAATAATCTGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGTTGTTACTACTTCTTTTCTTGCTGCTGTTAAACAGAGAGAAAATGATATATATATATGGAGAGATCGACGACATGTATTATTATTGCTATCATCATCTGATGAGATTATAATATGAGCAATGGAAATA ]
consensusID : consensus_16889#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[TTCAGGATGGAGCTAGTAGCTGAGATGGATGAGTTATTGATTGAATTGAATCGTTTTGATTTGGTTCTGGAATGAGATCTGCGATCTGCGATGCGATGCNACCTGCNTTTGAGAGATTGAATTGATTATTAAGTTGTTACTGACTTCTTTTCTTGCTGCTGTTGAAACGAGGAGGAGGAGAGAGATGGATGATGATGATGATNATGGGAGGAGGATCGNACGNACGATGTGATTNATTATTGCTATCATCATCTGATGAGATTATGAATATGAGCAATGGAAATATTATTTATTTAAAAAAAAA]
[+] EMBL AU097628 [TTCAGGATGGAGCTAGTAGCTGAGATGGATGAGTTATTGATTGAATTGAATCGTTTTGATTTGGTTCTGGAATGAGATCTGCGATCTGCGATGCGATGCNACCTGCNTTTGAGAGATTGAATTGATTATTAAGTTGTTACTGACTTCTTTTCTTGCTGCTGTTGAAACGAGGAGGAGGAGAGAGATGGATGATGATGATGATNATGGGAGGAGGATCGNACGNACGATGTGATTNATTATTGCTATCATCATCTGATGAGATTATGAATATGAGCAATGGAAATATTATTTATTTAAAAAAAAA]
consensusID : consensus_16889#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 151 fasta sequence
[TGATTGATTGAAAGTGTGGTTGACTGACTGTGCTGTGTGTGCTGTGGCTGGCTGGTTGGAAAACAGGAGAGAAATGATATATANATATGGAGAGATCGACGACATGTATTATTATTGCTATCATCATCTGATGAGATTATAATATGACAAT]
[+] EMBL BI807315 [TGATTGATTGAAAGTGTGGTTGACTGACTGTGCTGTGTGTGCTGTGGCTGGCTGGTTGGAAAACAGGAGAGAAATGATATATANATATGGAGAGATCGACGACATGTATTATTATTGCTATCATCATCTGATGAGATTATAATATGACAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16889#1 TTCCTCGAGCACTGTTGGCCTACTGGAAACCATCCAACCTCACACAGTTCACACAACCAC 60
consensus_16889#3 ------------------------------------------------------------
consensus_16889#2 ------------------------------------------------------------
consensus_16889#0 ---------------------------------CCAACCTCACACAGTTCACACAACCAC 27
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 AAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGA 120
consensus_16889#3 ------------------------------------------------------------
consensus_16889#2 ------------------------------------------------------------
consensus_16889#0 AAGCTTCAAAGCTCCCTACTACTTCTCCTCCTCCTTCTTCTCCGGCGCCGGCGACGATGA 87
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 CGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCG 180
consensus_16889#3 ------------------------------------------------------------
consensus_16889#2 ------------------------------------------------------------
consensus_16889#0 CGCTGACGATCCCGGACGACGTGCGGGCGAAGGCGGAGGTGTACGTCGGCGACGAGGCCG 147
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 GGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTC 240
consensus_16889#3 ------------------------------------------------------------
consensus_16889#2 ------------------------------------------------------------
consensus_16889#0 GGCAGGAGAAGACGCGGCTGCTGCTGGAGGAGACGGGGCTCCCCAGCGGCCTCCTCCCTC 207
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 TCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTGAAGCAGC 300
consensus_16889#3 ------------------------------------------------------------
consensus_16889#2 ------------------------------------------------------------
consensus_16889#0 TCCGCGACATCATCGAGTGCGGCTACGTGGAGGAGACCGGGTTCGTGTGGCTGAAGCAGC 267
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 GGCGGAAGGTGGACCACTTCTTCGCCAAGGCCGGCCGCCACGTCAGCTACGCCGCCGAGG 360
consensus_16889#3 ------------------------------------------------------------
consensus_16889#2 ------------------------------------------------------------
consensus_16889#0 GGCGGAAGGTGGACCACTTCTTCGCCAAGGCCGGCCGCCACGTCAGCTACGCCGCCGAGG 327
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 TCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGC 420
consensus_16889#3 ------------------------------------------------------------
consensus_16889#2 ------------------------------------------------------------
consensus_16889#0 TCTCCGCCGTCGCCGAGAAGGGCCGCCTCCGCAAGATCACCGGCGTCAAGGCCAAGGAGC 387
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 TCCTCATCTGGGTCACCCTCCACGAGATCGCCGTCGACGACCCCCCCACCGGCAAGCTCA 480
consensus_16889#3 ------------------------------------------------------------
consensus_16889#2 -----------------------------------------CCCCCCCCCGGCAAGTTCA 19
consensus_16889#0 TCCTCATCTGGGTCACCCTCCACGAGATCGCCGTCGACGACCCCCCCACCGGCAAGCTCA 447
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 CCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCC 540
consensus_16889#3 ------------------------------------------------------------
consensus_16889#2 CCTGCAAGGCCATTGGGGGCCTTTTCCGCAGCTTCCCCGTCGACGCCTTTGAGGCCCCCC 79
consensus_16889#0 CCTGCAAGGCCATCGGCGGCCTCTCCCGCAGCTTCCCCGTCGACGCCTTCGAGGCCCCCC 507
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 CGCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGGCGACACCACCAAGGTCGATGAGGAGA 600
consensus_16889#3 ------------------------------------------------------------
consensus_16889#2 CCCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGGGGACCCCCCCAAGGTTGATGAGGAGA 139
consensus_16889#0 CGCCGCCGCCCAAGAACCCCTCCCCCGCCGCCGGCGACACCACCAAGGTCGATGAGGAGA 567
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 AGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGG 660
consensus_16889#3 --------------------------------------------------GAGATCGAGG 10
consensus_16889#2 AGAAGAAGGAGGGGGAGGTTGCCGGTGACGCCGCCCCCCCCGCCATTGACGAGATTGAGG 199
consensus_16889#0 AGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGATCGAGG 627
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 GGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGGTGCAGGCCGAGGGAGTGGCAGCCA 720
consensus_16889#3 GGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGGTCAGTGCCGAGGGAT--GCA-CCA 67
consensus_16889#2 GGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGGTGCAGGCCGAGGGAGTGGCACCCA 259
consensus_16889#0 GGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGGTGCAGGCCGAGGGAGTGGCAGCCA 687
consensus_16889#5 -------------------------------------------TTCAGGAT--GGAGCTA 15
consensus_16889#4 ------------------------------------------------------------
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 AGAACTGAAGAAGATCGATCGATCGATATACACAGATCATCATACATCTCATCATCATCA 780
consensus_16889#3 AGAACTGAAGAAGATCGATCGATCGATATACACAGATCATCATACATCTCATCATCATCA 127
consensus_16889#2 AGAAGTGAAGAAGATCCATCGATCGATATACACAGATCATCATACATTTCATCATCATCA 319
consensus_16889#0 AGAACTGAAGAAGATCGATCGATCGATATACACAGATCATCATACATCTCATCATCATCA 747
consensus_16889#5 GTAGCTGAGATGGATGAGTT-ATTGATTGAATTGAATCGTTTTGATTTGGTTCTGGAATG 74
consensus_16889#4 ----TCCTCCAATCCAATCCAATCCAATNCCAAGCCAAGCCAAGAAAGCCAAGCCAAGCC 56
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 TCAGCAGC---AGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCT 837
consensus_16889#3 TCAGCAGCAGCAGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCT 187
consensus_16889#2 TCAGCAGC---AGAAGCAGCAGCCCGAGATTTCCCTATCCTATGGAGATTCAGATGAGCT 376
consensus_16889#0 TCAGCAGC---AGAAGCAGCAGCACGAGATCTCACTATCATATGGAGATTCAGATGAGCT 804
consensus_16889#5 AGATCTGCGATCTGCGATGCGATGCNACCTGCNTTTGAGAGATTGAATTGATTATTAAGT 134
consensus_16889#4 ACCGAAGAATCCTCCACCTTAATCCATTAATTGGGAAGGATTCCAAGGATTGAAGCCTAG 116
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 AGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTG---GTTCTGAATAATC 894
consensus_16889#3 AGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTG---GTTCTGAATAATC 244
consensus_16889#2 CGTAGCTGAGATGATGAGTTATTATTAATTAATTGTTTTATTTG---GTTCTGAAAAATA 433
consensus_16889#0 AGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTG---GTTCTGAATAATC 861
consensus_16889#5 TGTTACTGACTTCTTTTCTTGCTGCTGTTGAAACGAGGAGGAGGAGAGAGATGGATGATG 194
consensus_16889#4 TAAGCCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTG---GTTCTGAATAATC 173
consensus_16889#6 ------------------------------------------------------------
consensus_16889#1 TGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGT-TGTTACTACT-TCTT 952
consensus_16889#3 TGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGT-TGTTACTACT-TCTT 302
consensus_16889#2 TGCATTTGCAGGCAGGCAGGGCTTTAAATTAATTATTATTAAGT-TGCTGCAGCT-TCTT 491
consensus_16889#0 TGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGT-TGTTACTACT-TCTT 919
consensus_16889#5 ATGATGATNATGGGAGGAGGATCGNACGNACGATGTGATTNA-T-TATTGCTATCATCAT 252
consensus_16889#4 TGCATCTGCATGCATGCACTGCTTTAAATTAATTATTATTAAGT-TGTTACTACTTCTTT 232
consensus_16889#6 --------------TG-ATTGATTGAAAGTGTGGTTGACTGACTGTGCTGTGTGTGCTGT 45
* * * * * * * * * * *
consensus_16889#1 TTCTTGCTG-CTGTTAAACAGAGAGA---AAATGATATAAAAAAAAAAAAAAAAAAAAAA 1008
consensus_16889#3 TTCTTGCTG-CTGTTAAACAGAGAGA---AAATGATATATATATATGGAGAGATCGACGA 358
consensus_16889#2 TTTTTTCTC-CTGTTAAACAGAGAGA---AAATGATATATATATACGGAGAGATGGACGA 547
consensus_16889#0 TTCTTGCTG-CTGTTAAACAGAGAGA---AAATGATATATATATATGGAGAGATCGACGA 975
consensus_16889#5 CTGATGAGA-TTATGAATATGAGCAATGGAAATATTATTTATTTAAAAAAAAA------- 304
consensus_16889#4 T-CTTGCTG-CTGTTAAACAGAGAGA---AAATGATATATATATATGGAGAGATCGACGA 287
consensus_16889#6 GGCTGGCTGGTTGGAAAACAGGAGAG---AAATGATATATANATATGGAGAGATCGACGA 102
* ** * **** *** * * * * *
consensus_16889#1 AGGCCACAT--------------------------------------------------- 1017
consensus_16889#3 CATGTAAAAAAAAAAGAAA----------------------------------------- 377
consensus_16889#2 CATGTAGTATTATTGGTATCATCATCTGAGGAGATTATAATATGAGAGGTGGAAATAT-- 605
consensus_16889#0 CATGTATTATTATTGCTATCATCATCTGATGAGATTATAATATGAGCAATGGAAATATTA 1035
consensus_16889#5 ------------------------------------------------------------
consensus_16889#4 CATGTATTATTATTGCTATCATCATCTGATGAGATTATAATATGAGCAATGGAAATATTA 347
consensus_16889#6 CATGTATTATTATTGCTATCATCATCTGATGAGATTATAATATGA-CAAT---------- 151
consensus_16889#1 ------------------------------------------------------
consensus_16889#3 ------------------------------------------------------
consensus_16889#2 ------------------------------------------------------
consensus_16889#0 TTTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAA 1089
consensus_16889#5 ------------------------------------------------------
consensus_16889#4 TTTATTTAATTATGTTGAAA---------------------------------- 367
consensus_16889#6 ------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||