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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1543 fasta sequence
[GTAATGACCAAATTATCTCCCTGAATCTAATACACCTTCTTCCTCCCCAAGATAATCTCCTCTGCTTCAGAGTTCTTCCTTCTTCTTCTCGTTCCTTCTCTCCAGCCTTCTCTCCCGATCTCTTGGGTTCTGTCTTCTGAGTATTCTTAATGAGTTTTGATCAAGTGACATTGGGAGCAAGAAGCTGTTTTTTGGCCGATCGTTTTATAACACGCCTGTGATGTCTGATGATATCAAGTTCGTCCTTAGTCTGCTGCTGCTAAGCAGCTTAATGTTGTTCGTAGCTTCTGATGACACCGAATGCCTAAGGACTCTGCAGAAATCACTGGTTGATCCCCGTGGTGAACTCGAATCCACTTGGAATTTTTCTGGCAATGGATTCAACGGTTTCATATGCAGCTTTACTGGAGTAAACTGCTGGAATCCCAGTGATAGCACGGTTCGTTCTTTACATCTCGTCAGTCTGGGACTTCAAGGCCAATTTCCTGAGGGTCTTCAGGGCTGCAGTATGATAGAAGACTTGAATTTGTCAGGTAACAGTTTTTCAGGACCCATCCCTTCCGACATCTCATGGCGGCTTCCCTATTTGAGATATCTGGACCTCTCGCACAACAGCTTTTCAGGTCAAATCCCAACCAATATCACAGAAATGACAAAACTGGAATTTCTAAACCTGTCAAATAATGATTTCTCAGGACCCATCCCTTCTAATATCTCATTGTTGGTTCCACAATTAAGTTCCCTGGATCTCTCGTACAACAGCTTTTCAGGTCCAATTCCAGTGAGCATCACAGACATGGCATACCTGAAATTGAAAACACTGAACCTTCGGCACAGCAAACTCAATGGTGAAATTCCATGGCAATTCTGTTCTCTCGCTCACTCGGTTTCGTTCAGTGTTGCAGAAAATTTGTTTTCAGGGCTTGTTCCATCTTGTTTCGAGAATTTTACAGCTTCAATCTTTGCTGGCAACCGAAGGCTTTGTGGTGCACCGTTGGGTAACTGCAGGTTGCGCAGAGTCAACGACGAGACTAGTATCGGAGCAGCTGTCGGTTTCGTGGTTGGATTCGTGTTGGCCTTCTACTTCCCGCACTGGTTCGTCTTCTCCACGAGTCTCCATTCCTACATCTTTCGGATTTGATCTTCTGGAACTTTTGTGTGGCGTTGTGGCAACCCGCCGTCAACTTCGGGTGGGCAAATAAACATGTGCAAAAAGAGCAATTCTACGGTCCTTAAGGATGTATTATGAGGTACCAAAATTTTAGTGTAAAATTTGGTACCTCATGATACCTCATAGTACCTAGGTATCAAGAGGTACCAAATTTATAATAGAAAAAATAGTATCTCATGGTACCTCCTCAAGAACCGTCAAATTGCTCGTGCAAAAATGCTTGTATTTCCATGAAGATTAGTGTCATTGTTATGGGTAATTTTACCAATCTTAAAAAAAGTACCGGGATGTATCCACTTTCTAATGTAAAATTTGGTTCCTCGGGGTACCAAAATTTTTAATGTAAAATCTTGATACCTCCAGGTACTTTCT]
[+] EMBL AK105471 [GTAATGACCAAATTATCTCCCTGAATCTAATACACCTTCTTCCTCCCCAAGATAATCTCCTCTGCTTCAGAGTTCTTCCTTCTTCTTCTCGTTCCTTCTCTCCAGCCTTCTCTCCCGATCTCTTGGGTTCTGTCTTCTGAGTATTCTTAATGAGTTTTGATCAAGTGACATTGGGAGCAAGAAGCTGTTTTTTGGCCGATCGTTTTATAACACGCCTGTGATGTCTGATGATATCAAGTTCGTCCTTAGTCTGCTGCTGCTAAGCAGCTTAATGTTGTTCGTAGCTTCTGATGACACCGAATGCCTAAGGACTCTGCAGAAATCACTGGTTGATCCCCGTGGTGAACTCGAATCCACTTGGAATTTTTCTGGCAATGGATTCAACGGTTTCATATGCAGCTTTACTGGAGTAAACTGCTGGAATCCCAGTGATAGCACGGTTCGTTCTTTACATCTCGTCAGTCTGGGACTTCAAGGCCAATTTCCTGAGGGTCTTCAGGGCTGCAGTATGATAGAAGACTTGAATTTGTCAGGTAACAGTTTTTCAGGACCCATCCCTTCCGACATCTCATGGCGGCTTCCCTATTTGAGATATCTGGACCTCTCGCACAACAGCTTTTCAGGTCAAATCCCAACCAATATCACAGAAATGACAAAACTGGAATTTCTAAACCTGTCAAATAATGATTTCTCAGGACCCATCCCTTCTAATATCTCATTGTTGGTTCCACAATTAAGTTCCCTGGATCTCTCGTACAACAGCTTTTCAGGTCCAATTCCAGTGAGCATCACAGACATGGCATACCTGAAATTGAAAACACTGAACCTTCGGCACAGCAAACTCAATGGTGAAATTCCATGGCAATTCTGTTCTCTCGCTCACTCGGTTTCGTTCAGTGTTGCAGAAAATTTGTTTTCAGGGCTTGTTCCATCTTGTTTCGAGAATTTTACAGCTTCAATCTTTGCTGGCAACCGAAGGCTTTGTGGTGCACCGTTGGGTAACTGCAGGTTGCGCAGAGTCAACGACGAGACTAGTATCGGAGCAGCTGTCGGTTTCGTGGTTGGATTCGTGTTGGCCTTCTACTTCCCGCACTGGTTCGTCTTCTCCACGAGTCTCCATTCCTACATCTTTCGGATTTGATCTTCTGGAACTTTTGTGTGGCGTTGTGGCAACCCGCCGTCAACTTCGGGTGGGCAAATAAACATGTGCAAAAAGAGCAATTCTACGGTCCTTAAGGATGTATTATGAGGTACCAAAATTTTAGTGTAAAATTTGGTACCTCATGATACCTCATAGTACCTAGGTATCAAGAGGTACCAAATTTATAATAGAAAAAATAGTATCTCATGGTACCTCCTCAAGAACCGTCAAATTGCTCGTGCAAAAATGCTTGTATTTCCATGAAGATTAGTGTCATTGTTATGGGTAATTTTACCAATCTTAAAAAAAGTACCGGGATGTATCCACTTTCTAATGTAAAATTTGGTTCCTCGGGGTACCAAAATTTTTAATGTAAAATCTTGATACCTCCAGGTACTTTCT]
consensusID : consensus_169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[TTCAGTGTTGCAGAAAATTTGTTTTCAGGGCTTGTTCCATCTTGTTTCGAGAATTTTACAGCTTCAATCTTTGCTGGCAACCGAAGGCTTTGTGGTGCACCGTTGGGTAACTGCAGGTTGCGCAGAGTCAACGACGAGACTAGTATCGGAGCAGCTGTCGGTTTCGTGGTTGGATTCGTGTTGGCCTTCTACTTCCCGCACTGGTTCGTCTTCTCCACGAGTCTCCATTCCTACATCTTTCGGATTTGATCTTCTGGAACTTTTGTGTGGCGTTGTGGCAACCGGCCGTCAACTTCAGGTGGGCAAATAAACATGTACAAAAAGAGCAATTCTACGGTCCTTAAGGATGTATTATGAGGTACCAAAATTTTAGTGTAAAATTTGGTACCTCATGGTACCTCATAGTACCTAGGTATCAAGAGGTACCAAATTTACAATAGAAAAAATAGTATCTCATGTTACCTCCTCAAGGACTATAAAATTGCTCGTGCAAAAATACTTGTATTTCCATGAAAAAAAAAAAAAA]
[+] EMBL BM422135 [TTCAGTGTTGCAGAAAATTTGTTTTCAGGGCTTGTTCCATCTTGTTTCGAGAATTTTACAGCTTCAATCTTTGCTGGCAACCGAAGGCTTTGTGGTGCACCGTTGGGTAACTGCAGGTTGCGCAGAGTCAACGACGAGACTAGTATCGGAGCAGCTGTCGGTTTCGTGGTTGGATTCGTGTTGGCCTTCTACTTCCCGCACTGGTTCGTCTTCTCCACGAGTCTCCATTCCTACATCTTTCGGATTTGATCTTCTGGAACTTTTGTGTGGCGTTGTGGCAACCGGCCGTCAACTTCAGGTGGGCAAATAAACATGTACAAAAAGAGCAATTCTACGGTCCTTAAGGATGTATTATGAGGTACCAAAATTTTAGTGTAAAATTTGGTACCTCATGGTACCTCATAGTACCTAGGTATCAAGAGGTACCAAATTTACAATAGAAAAAATAGTATCTCATGTTACCTCCTCAAGGACTATAAAATTGCTCGTGCAAAAATACTTGTATTTCCATGAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_169#0 GTAATGACCAAATTATCTCCCTGAATCTAATACACCTTCTTCCTCCCCAAGATAATCTCC 60
consensus_169#1 ------------------------------------------------------------
consensus_169#0 TCTGCTTCAGAGTTCTTCCTTCTTCTTCTCGTTCCTTCTCTCCAGCCTTCTCTCCCGATC 120
consensus_169#1 ------------------------------------------------------------
consensus_169#0 TCTTGGGTTCTGTCTTCTGAGTATTCTTAATGAGTTTTGATCAAGTGACATTGGGAGCAA 180
consensus_169#1 ------------------------------------------------------------
consensus_169#0 GAAGCTGTTTTTTGGCCGATCGTTTTATAACACGCCTGTGATGTCTGATGATATCAAGTT 240
consensus_169#1 ------------------------------------------------------------
consensus_169#0 CGTCCTTAGTCTGCTGCTGCTAAGCAGCTTAATGTTGTTCGTAGCTTCTGATGACACCGA 300
consensus_169#1 ------------------------------------------------------------
consensus_169#0 ATGCCTAAGGACTCTGCAGAAATCACTGGTTGATCCCCGTGGTGAACTCGAATCCACTTG 360
consensus_169#1 ------------------------------------------------------------
consensus_169#0 GAATTTTTCTGGCAATGGATTCAACGGTTTCATATGCAGCTTTACTGGAGTAAACTGCTG 420
consensus_169#1 ------------------------------------------------------------
consensus_169#0 GAATCCCAGTGATAGCACGGTTCGTTCTTTACATCTCGTCAGTCTGGGACTTCAAGGCCA 480
consensus_169#1 ------------------------------------------------------------
consensus_169#0 ATTTCCTGAGGGTCTTCAGGGCTGCAGTATGATAGAAGACTTGAATTTGTCAGGTAACAG 540
consensus_169#1 ------------------------------------------------------------
consensus_169#0 TTTTTCAGGACCCATCCCTTCCGACATCTCATGGCGGCTTCCCTATTTGAGATATCTGGA 600
consensus_169#1 ------------------------------------------------------------
consensus_169#0 CCTCTCGCACAACAGCTTTTCAGGTCAAATCCCAACCAATATCACAGAAATGACAAAACT 660
consensus_169#1 ------------------------------------------------------------
consensus_169#0 GGAATTTCTAAACCTGTCAAATAATGATTTCTCAGGACCCATCCCTTCTAATATCTCATT 720
consensus_169#1 ------------------------------------------------------------
consensus_169#0 GTTGGTTCCACAATTAAGTTCCCTGGATCTCTCGTACAACAGCTTTTCAGGTCCAATTCC 780
consensus_169#1 ------------------------------------------------------------
consensus_169#0 AGTGAGCATCACAGACATGGCATACCTGAAATTGAAAACACTGAACCTTCGGCACAGCAA 840
consensus_169#1 ------------------------------------------------------------
consensus_169#0 ACTCAATGGTGAAATTCCATGGCAATTCTGTTCTCTCGCTCACTCGGTTTCGTTCAGTGT 900
consensus_169#1 ----------------------------------------------------TTCAGTGT 8
********
consensus_169#0 TGCAGAAAATTTGTTTTCAGGGCTTGTTCCATCTTGTTTCGAGAATTTTACAGCTTCAAT 960
consensus_169#1 TGCAGAAAATTTGTTTTCAGGGCTTGTTCCATCTTGTTTCGAGAATTTTACAGCTTCAAT 68
************************************************************
consensus_169#0 CTTTGCTGGCAACCGAAGGCTTTGTGGTGCACCGTTGGGTAACTGCAGGTTGCGCAGAGT 1020
consensus_169#1 CTTTGCTGGCAACCGAAGGCTTTGTGGTGCACCGTTGGGTAACTGCAGGTTGCGCAGAGT 128
************************************************************
consensus_169#0 CAACGACGAGACTAGTATCGGAGCAGCTGTCGGTTTCGTGGTTGGATTCGTGTTGGCCTT 1080
consensus_169#1 CAACGACGAGACTAGTATCGGAGCAGCTGTCGGTTTCGTGGTTGGATTCGTGTTGGCCTT 188
************************************************************
consensus_169#0 CTACTTCCCGCACTGGTTCGTCTTCTCCACGAGTCTCCATTCCTACATCTTTCGGATTTG 1140
consensus_169#1 CTACTTCCCGCACTGGTTCGTCTTCTCCACGAGTCTCCATTCCTACATCTTTCGGATTTG 248
************************************************************
consensus_169#0 ATCTTCTGGAACTTTTGTGTGGCGTTGTGGCAACCCGCCGTCAACTTCGGGTGGGCAAAT 1200
consensus_169#1 ATCTTCTGGAACTTTTGTGTGGCGTTGTGGCAACCGGCCGTCAACTTCAGGTGGGCAAAT 308
*********************************** ************ ***********
consensus_169#0 AAACATGTGCAAAAAGAGCAATTCTACGGTCCTTAAGGATGTATTATGAGGTACCAAAAT 1260
consensus_169#1 AAACATGTACAAAAAGAGCAATTCTACGGTCCTTAAGGATGTATTATGAGGTACCAAAAT 368
******** ***************************************************
consensus_169#0 TTTAGTGTAAAATTTGGTACCTCATGATACCTCATAGTACCTAGGTATCAAGAGGTACCA 1320
consensus_169#1 TTTAGTGTAAAATTTGGTACCTCATGGTACCTCATAGTACCTAGGTATCAAGAGGTACCA 428
************************** *********************************
consensus_169#0 AATTTATAATAGAAAAAATAGTATCTCATGGTACCTCCTCAAGAACCGTCAAATTGCTCG 1380
consensus_169#1 AATTTACAATAGAAAAAATAGTATCTCATGTTACCTCCTCAAGGACTATAAAATTGCTCG 488
****** *********************** ************ ** * **********
consensus_169#0 TGCAAAAATGCTTGTATTTCCATGAAGATTAGTGTCATTGTTATGGGTAATTTTACCAAT 1440
consensus_169#1 TGCAAAAATACTTGTATTTCCATGAAAAAAAAAAAAAA---------------------- 526
********* **************** * * *
consensus_169#0 CTTAAAAAAAGTACCGGGATGTATCCACTTTCTAATGTAAAATTTGGTTCCTCGGGGTAC 1500
consensus_169#1 ------------------------------------------------------------
consensus_169#0 CAAAATTTTTAATGTAAAATCTTGATACCTCCAGGTACTTTCT 1543
consensus_169#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||