These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGGATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGGAGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGAGGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGGTGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACCTGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCGCCGCGTGCCGCGCCATGATCGCGGCGAGCTGCGGCAGCGTCGACGCCAGGATGAACTTGTTCCAGTTCGTCAAGTTCCTCGAGACCGGCCTCTGCTAATCAAGGCTGATTAATTAATTTTTTTTCAATTTTTTTTTCCGTTTTGGGTTCGTTGCACGGTGCACGGCTCAGCTCGTGGCAGAAGATGAGAGAGCTAGTGGTGTGTGTTGCAAATTTTCCTCTTTTTTTTTCTTTTTCCTTCTGCGAGGCATGAGTTGGTGCTTTGTGCAACAATTAACGGACTAATCTGTCAA] [+] EMBL AK105175 [GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGGATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGGAGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGAGGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGGTGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACCTGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCGCCGCGTGCCGCGCCATGATCGCGGCGAGCTGCGGCAGCGTCGACGCCAGGATGAACTTGTTCCAGTTCGTCAAGTTCCTCGAGACCGGCCTCTGCTAATCAAGGCTGATTAATTAATTTTTTTTCAATTTTTTTTTCCGTTTTGGGTTCGTTGCACGGTGCACGGCTCAGCTCGTGGCAGAAGATGAGAGAGCTAGTGGTGTGTGTTGCAAATTTTCCTCTTTTTTTTTCTTTTTCCTTCTGCGAGGCATGAGTTGGTGCTTTGTGCAACAATTAACGGACTAATCTGTCAA] consensusID : consensus_1698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGGATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGGAGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGAGGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGGTGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACCTGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCATCCCATGCCATTTTTTATTTCATGTGAAAGATTGTATGGTTGGTCGTGTTGTTATTCCCCCCTCCCCTCCTCTTTGTAATTTTTATTCCATTGTTGCCCCGCCGANAGTTTGTCCCTGATCTTGCAGGCACCCCCATCTTCACGGATTGTTACGAGTCTTTTATGCCGCCTCTCGTCCTCTTTTTGGTCCTACCGGACTATTCTTTATTTTCCTTACACCCCCCCTGGTCGATTCTCTTAGTACATTTCCCCCCA] [+] EMBL CA756949 [GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGGATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGGAGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGAGGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGGTGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACCTGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCATCCCATGCCATTTTTTATTTCATGTGAAAGATTGTATGGTTGGTCGTGTTGTTATTCCCCCCTCCCCTCCTCTTTGTAATTTTTATTCCATTGTTGCCCCGCCGANAGTTTGTCCCTGATCTTGCAGGCACCCCCATCTTCACGGATTGTTACGAGTCTTTTATGCCGCCTCTCGTCCTCTTTTTGGTCCTACCGGACTATTCTTTATTTTCCTTACACCCCCCCTGGTCGATTCTCTTAGTACATTTCCCCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1698#0 GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGG 60 consensus_1698#1 GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGG 60 ************************************************************ consensus_1698#0 ATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGG 120 consensus_1698#1 ATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGG 120 ************************************************************ consensus_1698#0 AGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGA 180 consensus_1698#1 AGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGA 180 ************************************************************ consensus_1698#0 GGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGG 240 consensus_1698#1 GGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGG 240 ************************************************************ consensus_1698#0 TGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACC 300 consensus_1698#1 TGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACC 300 ************************************************************ consensus_1698#0 TGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCGCCGCGTGCCGCGCCATGA 360 consensus_1698#1 TGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCATCCCATGCCATTTTTTAT 360 ***************************************** * * **** * consensus_1698#0 TCGCGGCGAGCTGCGGCAGCGTCGACGCCAGGATGAACTTGTTCCAGTTCGTCAAGTTCC 420 consensus_1698#1 TTCATGTGAAAGATTGTATGGTTG--GTCGTGTTG---TTATTCCCCCCTCCCCTCCTCT 415 * * ** * * ** * * * * ** ** **** * ** consensus_1698#0 TCGAGACCGGCCTCTGCTAATCAAGGCTGATTAATTAATTTTTTTTCAATTTTTTTTTCC 480 consensus_1698#1 TTGTAATT--TTTATTCCATTGTTGCCCCGCCGAN-AGTTTGTCCCTGATCTTGCAGGCA 472 * * * * * * * * * * * * *** * ** ** * consensus_1698#0 GTTTTGGGTTCGTTGCACGGTGCACGGCTCAGCTCGTGGCAGAAGATGAGAGAGCTAGTG 540 consensus_1698#1 CCCCCATCTTCACGGATTGTTACGAGTCTT---TTATGCC----GCCTCTCGTCCTCTTT 525 *** * * * * * ** * ** * * * ** * consensus_1698#0 GTGTGTGTTGCAAATTTTCCTCTTTTTTTTTCTTTTTCCTTCTGCGAGGCATGAGTTGGT 600 consensus_1698#1 TTGGTCCTACCGGACTATTCTTTATTTTCCTTACACCCCCCCTG-GTCGATTCTCTTAGT 584 ** * * * * * ** * **** * ** *** * * * ** ** consensus_1698#0 GCTTTGTGCAACAATTAACGGACTAATCTGTCAA 634 consensus_1698#1 ACATTTCCCCCCA--------------------- 597 * ** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||