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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2271 fasta sequence
[CCCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACAGAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCACATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGCGGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGCGGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGACGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGCACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCGACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGTAAGAATCTGAACTCAAGCTTAATTTTTATTTTTTGGGTTTCTTGATTTTTTGGGGATTTTGTTACTTAGGGTTCTTCATCCGAATCAGGGTTCTTCTCAATTTGGGGATTTTGGGAAAATTGAAACCGATTGATCTCATTCTTCCCTTCCCTTAATTTCTTAATTCTACTGCTAAGCAATTAACAAAAGATTAAATCTTGAATTTAAAACATGCAAAGAAACAGTATATATGAAGGGCTAAACCGAGCTAATTAACTTAGATTGAAAAACAATTCTCACTTATTTTCATCATGCCGAATTGATTAGGATTTAATTGGCATAATGGCTTCATTAGGGATGATGGAACATCAAGGCTAAGATTAGGCTCTGATACACAATGTTGGAGTTTAATCCACTTAACTACTTAAGTTCTTAGCCTAAACATGATCACCTCTGCTTAATGCGGAAATTGATCTAACTGACCTGAGATGAAGCCATTGAACCAGATGTTAGGTTTTGTTTTTGTTCCTTCGATCCTTCTTTCTTCTTCTCTGTTAAGGAAAAGAACACACAAGAGATGCCTCACGAACCATCAAACATTCATTGTACGTAAAATAAATTCTAATGACTAATATGTCTCACCATTTATTATTAGCTTTCTCACTAGAGTACTCATTTTTTGATAGCCTACTGACTGACTAATGCCCCAAAAAAGGCAGCCTACTAGCTAGTATATTACCATAACCATCTTCCTCCATGGCAACCACAATTGACTCGCTGCTTATTTGCTGTGTAGAAAAGTGTGTATTGAGTACTAGTACTAAGAGGGTTCAGGCGTCCAGCGCTGGGTGATATGACCAAGCCTACTATGGATACAACAGTTGTTCATATCATTGATCAACAAGAAGATCAAGTCGTCTTAAGTGCTGAAATCCAATTCGGCCACCTGCTACATTGCTGACTTCAACTGGCCACCAAATGCGCATACGAGCTCTGTTTTGGGTCCATGAGTATTTGATAAAAAGCTCCTAGAGTCCTCTCTCTAATGGTTCTAGCCTCATCTCTAAATCCCACCTCAATCGGCCGCAATAATAGAAACAAGGTGTTGCATCACTTATAATGGGCCTATGGGTTTGTAACTCCATCTGGGACCCCAGCCCAAGTGGGGTGCACCCCAACCTAATGGAGCATGACAGAACCCTAGGTCGTCCTCCCATATCCATAAATAGCTATGTACCCCTTCAGGGCCTAGGGACCCCTAGATCATCCTCCCACCTTCATAAAATAGCTAGGTACCCCTTCAAGGTTTATTGGGTTTTGTTTAGTAAAAAGTTTAGCAATCACTACTTTTCCTTGTACTTACGTGTGTCGGCTTGACCGCTTAATTATTCGCCTTTGGAAACCCACCTTATCTTGAGCTTTAATTCATAATTGTAATTCATAATGCTTTTATCTTGTTTTTGCTTGTTTCCTCGATTTGCTTGCAGGAATAAGGTTGGTCTGCATCGGCACGATCAACAGCCCACAAAGAGGTGTGTCGATTCCTAAGGCACAACACAACAACGCCTTGTACGGTTTTAGTCTGGTCGTCAATGTTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAATCAGAGCTTTGAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAATTCTATTCACACCCTCCCCCCCGGATGTCTTTGATCCTACACTATCCTAGTCCTTTTTTGATTGGGTGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA]
[+] EMBL AK101435 [CCCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACAGAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCACATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGCGGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGCGGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGACGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGCACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCGACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGTAAGAATCTGAACTCAAGCTTAATTTTTATTTTTTGGGTTTCTTGATTTTTTGGGGATTTTGTTACTTAGGGTTCTTCATCCGAATCAGGGTTCTTCTCAATTTGGGGATTTTGGGAAAATTGAAACCGATTGATCTCATTCTTCCCTTCCCTTAATTTCTTAATTCTACTGCTAAGCAATTAACAAAAGATTAAATCTTGAATTTAAAACATGCAAAGAAACAGTATATATGAAGGGCTAAACCGAGCTAATTAACTTAGATTGAAAAACAATTCTCACTTATTTTCATCATGCCGAATTGATTAGGATTTAATTGGCATAATGGCTTCATTAGGGATGATGGAACATCAAGGCTAAGATTAGGCTCTGATACACAATGTTGGAGTTTAATCCACTTAACTACTTAAGTTCTTAGCCTAAACATGATCACCTCTGCTTAATGCGGAAATTGATCTAACTGACCTGAGATGAAGCCATTGAACCAGATGTTAGGTTTTGTTTTTGTTCCTTCGATCCTTCTTTCTTCTTCTCTGTTAAGGAAAAGAACACACAAGAGATGCCTCACGAACCATCAAACATTCATTGTACGTAAAATAAATTCTAATGACTAATATGTCTCACCATTTATTATTAGCTTTCTCACTAGAGTACTCATTTTTTGATAGCCTACTGACTGACTAATGCCCCAAAAAAGGCAGCCTACTAGCTAGTATATTACCATAACCATCTTCCTCCATGGCAACCACAATTGACTCGCTGCTTATTTGCTGTGTAGAAAAGTGTGTATTGAGTACTAGTACTAAGAGGGTTCAGGCGTCCAGCGCTGGGTGATATGACCAAGCCTACTATGGATACAACAGTTGTTCATATCATTGATCAACAAGAAGATCAAGTCGTCTTAAGTGCTGAAATCCAATTCGGCCACCTGCTACATTGCTGACTTCAACTGGCCACCAAATGCGCATACGAGCTCTGTTTTGGGTCCATGAGTATTTGATAAAAAGCTCCTAGAGTCCTCTCTCTAATGGTTCTAGCCTCATCTCTAAATCCCACCTCAATCGGCCGCAATAATAGAAACAAGGTGTTGCATCACTTATAATGGGCCTATGGGTTTGTAACTCCATCTGGGACCCCAGCCCAAGTGGGGTGCACCCCAACCTAATGGAGCATGACAGAACCCTAGGTCGTCCTCCCATATCCATAAATAGCTATGTACCCCTTCAGGGCCTAGGGACCCCTAGATCATCCTCCCACCTTCATAAAATAGCTAGGTACCCCTTCAAGGTTTATTGGGTTTTGTTTAGTAAAAAGTTTAGCAATCACTACTTTTCCTTGTACTTACGTGTGTCGGCTTGACCGCTTAATTATTCGCCTTTGGAAACCCACCTTATCTTGAGCTTTAATTCATAATTGTAATTCATAATGCTTTTATCTTGTTTTTGCTTGTTTCCTCGATTTGCTTGCAGGAATAAGGTTGGTCTGCATCGGCACGATCAACAGCCCACAAAGAGGTGTGTCGATTCCTAAGGCACAACACAACAACGCCTTGTACGGTTTTAGTCTGGTCGTCAATGTTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAATCAGAGCTTTGAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAATTCTATTCACACCCTCCCCCCCGGATGTCTTTGATCCTACACTATCCTAGTCCTTTTTTGATTGGGTGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA]
consensusID : consensus_170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence
[CCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACAGAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCACATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGCGGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGCGGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGACGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGCACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCGACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGAATAAGGTTGGTCTGCATCGGCACGACCAACAGCCCACAAAGAGGTGTGTCGATTCCTAAGGCACAACACAACAACGCCTTGTACGGTTTTAGTCTGGTCGTCAATGTTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAATCAGAGCTTTGAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAATTCTATTCACACCCTCCCCCCCGGATGTCTTTGATCCTACACTATCCTAGTCCTTTTTTGATTGGGTGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA]
[+] EMBL AK111287 [CCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACAGAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCACATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGCGGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGCGGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGACGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGCACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCGACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGAATAAGGTTGGTCTGCATCGGCACGACCAACAGCCCACAAAGAGGTGTGTCGATTCCTAAGGCACAACACAACAACGCCTTGTACGGTTTTAGTCTGGTCGTCAATGTTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAATCAGAGCTTTGAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAATTCTATTCACACCCTCCCCCCCGGATGTCTTTGATCCTACACTATCCTAGTCCTTTTTTGATTGGGTGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_170#0 CCCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACA 60
consensus_170#1 -CCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACA 59
***********************************************************
consensus_170#0 GAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCA 120
consensus_170#1 GAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCA 119
************************************************************
consensus_170#0 CATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGC 180
consensus_170#1 CATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGC 179
************************************************************
consensus_170#0 GGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGC 240
consensus_170#1 GGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGC 239
************************************************************
consensus_170#0 GGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGA 300
consensus_170#1 GGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGA 299
************************************************************
consensus_170#0 CGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGC 360
consensus_170#1 CGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGC 359
************************************************************
consensus_170#0 ACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCG 420
consensus_170#1 ACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCG 419
************************************************************
consensus_170#0 ACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGTAAGAA 480
consensus_170#1 ACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGAA---- 475
****************************************************** *
consensus_170#0 TCTGAACTCAAGCTTAATTTTTATTTTTTGGGTTTCTTGATTTTTTGGGGATTTTGTTAC 540
consensus_170#1 --TAAGGTTGGTCTGCATCGGCACGACCAACAGCCCACAAAG----AGGTGTGTCGATTC 529
* * * ** ** * * * ** * * * * *
consensus_170#0 TTAGGGTTCTTCATCCGAATCAGGGTTCTTCTCAATTTGGGGATTTTGGGAAAATTGAAA 600
consensus_170#1 CTAAGGCACAACAC----AACAACGCCTTGTACGGTTTTAG---TCTGGTC--GTCAATG 580
** ** * ** * ** * * * *** * * *** * *
consensus_170#0 CCGATTGATCTCATTCTTCCCTTCCCTTAATTTCTTAATTCTACTGCTAAGCAATTAACA 660
consensus_170#1 TTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAATCAGAGCTTT 640
* * ** * * * * * * ** * ** ** **
consensus_170#0 AAAGATTAAATCTTGAATTTAAAACATGCAAAGAAACAGTATATATGAAGGGCTAAACCG 720
consensus_170#1 GAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAATTCTAT-TCA 699
* * * * *** * * * * *** * * * * * *** *
consensus_170#0 AGCTAATTAACTTAGATTGAAAAACAATTCTCACTTATTTTCATCATGCCGAATTGATTA 780
consensus_170#1 CACCCTCCCCCCCGGAT--GTCTTTGATCCTACACTATCCTAGTCCTTTT---TTGATTG 754
* * *** ** ** *** * ** * ******
consensus_170#0 GGATTTAATTGGCATAATGGCTTCATTAGGGATGATGGAACATCAAGGCTAAGATTAGGC 840
consensus_170#1 GG---TGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA--------- 802
** * * ** * * **** ****** * ** **
consensus_170#0 TCTGATACACAATGTTGGAGTTTAATCCACTTAACTACTTAAGTTCTTAGCCTAAACATG 900
consensus_170#1 ------------------------------------------------------------
consensus_170#0 ATCACCTCTGCTTAATGCGGAAATTGATCTAACTGACCTGAGATGAAGCCATTGAACCAG 960
consensus_170#1 ------------------------------------------------------------
consensus_170#0 ATGTTAGGTTTTGTTTTTGTTCCTTCGATCCTTCTTTCTTCTTCTCTGTTAAGGAAAAGA 1020
consensus_170#1 ------------------------------------------------------------
consensus_170#0 ACACACAAGAGATGCCTCACGAACCATCAAACATTCATTGTACGTAAAATAAATTCTAAT 1080
consensus_170#1 ------------------------------------------------------------
consensus_170#0 GACTAATATGTCTCACCATTTATTATTAGCTTTCTCACTAGAGTACTCATTTTTTGATAG 1140
consensus_170#1 ------------------------------------------------------------
consensus_170#0 CCTACTGACTGACTAATGCCCCAAAAAAGGCAGCCTACTAGCTAGTATATTACCATAACC 1200
consensus_170#1 ------------------------------------------------------------
consensus_170#0 ATCTTCCTCCATGGCAACCACAATTGACTCGCTGCTTATTTGCTGTGTAGAAAAGTGTGT 1260
consensus_170#1 ------------------------------------------------------------
consensus_170#0 ATTGAGTACTAGTACTAAGAGGGTTCAGGCGTCCAGCGCTGGGTGATATGACCAAGCCTA 1320
consensus_170#1 ------------------------------------------------------------
consensus_170#0 CTATGGATACAACAGTTGTTCATATCATTGATCAACAAGAAGATCAAGTCGTCTTAAGTG 1380
consensus_170#1 ------------------------------------------------------------
consensus_170#0 CTGAAATCCAATTCGGCCACCTGCTACATTGCTGACTTCAACTGGCCACCAAATGCGCAT 1440
consensus_170#1 ------------------------------------------------------------
consensus_170#0 ACGAGCTCTGTTTTGGGTCCATGAGTATTTGATAAAAAGCTCCTAGAGTCCTCTCTCTAA 1500
consensus_170#1 ------------------------------------------------------------
consensus_170#0 TGGTTCTAGCCTCATCTCTAAATCCCACCTCAATCGGCCGCAATAATAGAAACAAGGTGT 1560
consensus_170#1 ------------------------------------------------------------
consensus_170#0 TGCATCACTTATAATGGGCCTATGGGTTTGTAACTCCATCTGGGACCCCAGCCCAAGTGG 1620
consensus_170#1 ------------------------------------------------------------
consensus_170#0 GGTGCACCCCAACCTAATGGAGCATGACAGAACCCTAGGTCGTCCTCCCATATCCATAAA 1680
consensus_170#1 ------------------------------------------------------------
consensus_170#0 TAGCTATGTACCCCTTCAGGGCCTAGGGACCCCTAGATCATCCTCCCACCTTCATAAAAT 1740
consensus_170#1 ------------------------------------------------------------
consensus_170#0 AGCTAGGTACCCCTTCAAGGTTTATTGGGTTTTGTTTAGTAAAAAGTTTAGCAATCACTA 1800
consensus_170#1 ------------------------------------------------------------
consensus_170#0 CTTTTCCTTGTACTTACGTGTGTCGGCTTGACCGCTTAATTATTCGCCTTTGGAAACCCA 1860
consensus_170#1 ------------------------------------------------------------
consensus_170#0 CCTTATCTTGAGCTTTAATTCATAATTGTAATTCATAATGCTTTTATCTTGTTTTTGCTT 1920
consensus_170#1 ------------------------------------------------------------
consensus_170#0 GTTTCCTCGATTTGCTTGCAGGAATAAGGTTGGTCTGCATCGGCACGATCAACAGCCCAC 1980
consensus_170#1 ------------------------------------------------------------
consensus_170#0 AAAGAGGTGTGTCGATTCCTAAGGCACAACACAACAACGCCTTGTACGGTTTTAGTCTGG 2040
consensus_170#1 ------------------------------------------------------------
consensus_170#0 TCGTCAATGTTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAAT 2100
consensus_170#1 ------------------------------------------------------------
consensus_170#0 CAGAGCTTTGAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAAT 2160
consensus_170#1 ------------------------------------------------------------
consensus_170#0 TCTATTCACACCCTCCCCCCCGGATGTCTTTGATCCTACACTATCCTAGTCCTTTTTTGA 2220
consensus_170#1 ------------------------------------------------------------
consensus_170#0 TTGGGTGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA 2271
consensus_170#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||