These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2271 fasta sequence [CCCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACAGAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCACATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGCGGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGCGGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGACGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGCACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCGACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGTAAGAATCTGAACTCAAGCTTAATTTTTATTTTTTGGGTTTCTTGATTTTTTGGGGATTTTGTTACTTAGGGTTCTTCATCCGAATCAGGGTTCTTCTCAATTTGGGGATTTTGGGAAAATTGAAACCGATTGATCTCATTCTTCCCTTCCCTTAATTTCTTAATTCTACTGCTAAGCAATTAACAAAAGATTAAATCTTGAATTTAAAACATGCAAAGAAACAGTATATATGAAGGGCTAAACCGAGCTAATTAACTTAGATTGAAAAACAATTCTCACTTATTTTCATCATGCCGAATTGATTAGGATTTAATTGGCATAATGGCTTCATTAGGGATGATGGAACATCAAGGCTAAGATTAGGCTCTGATACACAATGTTGGAGTTTAATCCACTTAACTACTTAAGTTCTTAGCCTAAACATGATCACCTCTGCTTAATGCGGAAATTGATCTAACTGACCTGAGATGAAGCCATTGAACCAGATGTTAGGTTTTGTTTTTGTTCCTTCGATCCTTCTTTCTTCTTCTCTGTTAAGGAAAAGAACACACAAGAGATGCCTCACGAACCATCAAACATTCATTGTACGTAAAATAAATTCTAATGACTAATATGTCTCACCATTTATTATTAGCTTTCTCACTAGAGTACTCATTTTTTGATAGCCTACTGACTGACTAATGCCCCAAAAAAGGCAGCCTACTAGCTAGTATATTACCATAACCATCTTCCTCCATGGCAACCACAATTGACTCGCTGCTTATTTGCTGTGTAGAAAAGTGTGTATTGAGTACTAGTACTAAGAGGGTTCAGGCGTCCAGCGCTGGGTGATATGACCAAGCCTACTATGGATACAACAGTTGTTCATATCATTGATCAACAAGAAGATCAAGTCGTCTTAAGTGCTGAAATCCAATTCGGCCACCTGCTACATTGCTGACTTCAACTGGCCACCAAATGCGCATACGAGCTCTGTTTTGGGTCCATGAGTATTTGATAAAAAGCTCCTAGAGTCCTCTCTCTAATGGTTCTAGCCTCATCTCTAAATCCCACCTCAATCGGCCGCAATAATAGAAACAAGGTGTTGCATCACTTATAATGGGCCTATGGGTTTGTAACTCCATCTGGGACCCCAGCCCAAGTGGGGTGCACCCCAACCTAATGGAGCATGACAGAACCCTAGGTCGTCCTCCCATATCCATAAATAGCTATGTACCCCTTCAGGGCCTAGGGACCCCTAGATCATCCTCCCACCTTCATAAAATAGCTAGGTACCCCTTCAAGGTTTATTGGGTTTTGTTTAGTAAAAAGTTTAGCAATCACTACTTTTCCTTGTACTTACGTGTGTCGGCTTGACCGCTTAATTATTCGCCTTTGGAAACCCACCTTATCTTGAGCTTTAATTCATAATTGTAATTCATAATGCTTTTATCTTGTTTTTGCTTGTTTCCTCGATTTGCTTGCAGGAATAAGGTTGGTCTGCATCGGCACGATCAACAGCCCACAAAGAGGTGTGTCGATTCCTAAGGCACAACACAACAACGCCTTGTACGGTTTTAGTCTGGTCGTCAATGTTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAATCAGAGCTTTGAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAATTCTATTCACACCCTCCCCCCCGGATGTCTTTGATCCTACACTATCCTAGTCCTTTTTTGATTGGGTGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA] [+] EMBL AK101435 [CCCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACAGAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCACATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGCGGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGCGGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGACGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGCACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCGACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGTAAGAATCTGAACTCAAGCTTAATTTTTATTTTTTGGGTTTCTTGATTTTTTGGGGATTTTGTTACTTAGGGTTCTTCATCCGAATCAGGGTTCTTCTCAATTTGGGGATTTTGGGAAAATTGAAACCGATTGATCTCATTCTTCCCTTCCCTTAATTTCTTAATTCTACTGCTAAGCAATTAACAAAAGATTAAATCTTGAATTTAAAACATGCAAAGAAACAGTATATATGAAGGGCTAAACCGAGCTAATTAACTTAGATTGAAAAACAATTCTCACTTATTTTCATCATGCCGAATTGATTAGGATTTAATTGGCATAATGGCTTCATTAGGGATGATGGAACATCAAGGCTAAGATTAGGCTCTGATACACAATGTTGGAGTTTAATCCACTTAACTACTTAAGTTCTTAGCCTAAACATGATCACCTCTGCTTAATGCGGAAATTGATCTAACTGACCTGAGATGAAGCCATTGAACCAGATGTTAGGTTTTGTTTTTGTTCCTTCGATCCTTCTTTCTTCTTCTCTGTTAAGGAAAAGAACACACAAGAGATGCCTCACGAACCATCAAACATTCATTGTACGTAAAATAAATTCTAATGACTAATATGTCTCACCATTTATTATTAGCTTTCTCACTAGAGTACTCATTTTTTGATAGCCTACTGACTGACTAATGCCCCAAAAAAGGCAGCCTACTAGCTAGTATATTACCATAACCATCTTCCTCCATGGCAACCACAATTGACTCGCTGCTTATTTGCTGTGTAGAAAAGTGTGTATTGAGTACTAGTACTAAGAGGGTTCAGGCGTCCAGCGCTGGGTGATATGACCAAGCCTACTATGGATACAACAGTTGTTCATATCATTGATCAACAAGAAGATCAAGTCGTCTTAAGTGCTGAAATCCAATTCGGCCACCTGCTACATTGCTGACTTCAACTGGCCACCAAATGCGCATACGAGCTCTGTTTTGGGTCCATGAGTATTTGATAAAAAGCTCCTAGAGTCCTCTCTCTAATGGTTCTAGCCTCATCTCTAAATCCCACCTCAATCGGCCGCAATAATAGAAACAAGGTGTTGCATCACTTATAATGGGCCTATGGGTTTGTAACTCCATCTGGGACCCCAGCCCAAGTGGGGTGCACCCCAACCTAATGGAGCATGACAGAACCCTAGGTCGTCCTCCCATATCCATAAATAGCTATGTACCCCTTCAGGGCCTAGGGACCCCTAGATCATCCTCCCACCTTCATAAAATAGCTAGGTACCCCTTCAAGGTTTATTGGGTTTTGTTTAGTAAAAAGTTTAGCAATCACTACTTTTCCTTGTACTTACGTGTGTCGGCTTGACCGCTTAATTATTCGCCTTTGGAAACCCACCTTATCTTGAGCTTTAATTCATAATTGTAATTCATAATGCTTTTATCTTGTTTTTGCTTGTTTCCTCGATTTGCTTGCAGGAATAAGGTTGGTCTGCATCGGCACGATCAACAGCCCACAAAGAGGTGTGTCGATTCCTAAGGCACAACACAACAACGCCTTGTACGGTTTTAGTCTGGTCGTCAATGTTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAATCAGAGCTTTGAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAATTCTATTCACACCCTCCCCCCCGGATGTCTTTGATCCTACACTATCCTAGTCCTTTTTTGATTGGGTGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA] consensusID : consensus_170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence [CCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACAGAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCACATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGCGGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGCGGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGACGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGCACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCGACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGAATAAGGTTGGTCTGCATCGGCACGACCAACAGCCCACAAAGAGGTGTGTCGATTCCTAAGGCACAACACAACAACGCCTTGTACGGTTTTAGTCTGGTCGTCAATGTTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAATCAGAGCTTTGAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAATTCTATTCACACCCTCCCCCCCGGATGTCTTTGATCCTACACTATCCTAGTCCTTTTTTGATTGGGTGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA] [+] EMBL AK111287 [CCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACAGAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCACATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGCGGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGCGGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGACGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGCACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCGACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGAATAAGGTTGGTCTGCATCGGCACGACCAACAGCCCACAAAGAGGTGTGTCGATTCCTAAGGCACAACACAACAACGCCTTGTACGGTTTTAGTCTGGTCGTCAATGTTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAATCAGAGCTTTGAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAATTCTATTCACACCCTCCCCCCCGGATGTCTTTGATCCTACACTATCCTAGTCCTTTTTTGATTGGGTGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_170#0 CCCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACA 60 consensus_170#1 -CCTTCTATTCCCCGATCCCCTTCTCCCAGCGAGCGTGAGACTGTATGGCGGCGATGACA 59 *********************************************************** consensus_170#0 GAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCA 120 consensus_170#1 GAGATGGCGGTTCGGTGAGGTGTAGCACGCGTGTGACGATGAGCGCCGAGTAGAGTGGCA 119 ************************************************************ consensus_170#0 CATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGC 180 consensus_170#1 CATCTGTGCTAGCTGGAGGGTGCGCCCGTGGGCAGTGCCAAACCATGGCGTGGCGTCTGC 179 ************************************************************ consensus_170#0 GGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGC 240 consensus_170#1 GGTCCAGCGAGGTGGACGCGCAAGCGGCGCCGAGCGTCACGTGGCCCGGACCTTGTCGGC 239 ************************************************************ consensus_170#0 GGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGA 300 consensus_170#1 GGGGGAGCGAAGGCCAAAGGCGGCGCCAAGCTGATGCTTCCCATCCCGGTTAGTCGGCGA 299 ************************************************************ consensus_170#0 CGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGC 360 consensus_170#1 CGGTGGGGGATCTCCAAGGTTGCGTGCGCACAGCAACCGCGAGGAGGAGAAGGCAAGGGC 359 ************************************************************ consensus_170#0 ACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCG 420 consensus_170#1 ACACCGAGGAGACGCATGGGCAAGCCCGTATGGCGCCGACGGCGGCGATACCGCTTCTCG 419 ************************************************************ consensus_170#0 ACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGTAAGAA 480 consensus_170#1 ACGAGACCAACACCGCAGTGAGGTTTCCCGGTAGAATTAGGGCTCCAAGTCCGGAA---- 475 ****************************************************** * consensus_170#0 TCTGAACTCAAGCTTAATTTTTATTTTTTGGGTTTCTTGATTTTTTGGGGATTTTGTTAC 540 consensus_170#1 --TAAGGTTGGTCTGCATCGGCACGACCAACAGCCCACAAAG----AGGTGTGTCGATTC 529 * * * ** ** * * * ** * * * * * consensus_170#0 TTAGGGTTCTTCATCCGAATCAGGGTTCTTCTCAATTTGGGGATTTTGGGAAAATTGAAA 600 consensus_170#1 CTAAGGCACAACAC----AACAACGCCTTGTACGGTTTTAG---TCTGGTC--GTCAATG 580 ** ** * ** * ** * * * *** * * *** * * consensus_170#0 CCGATTGATCTCATTCTTCCCTTCCCTTAATTTCTTAATTCTACTGCTAAGCAATTAACA 660 consensus_170#1 TTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAATCAGAGCTTT 640 * * ** * * * * * * ** * ** ** ** consensus_170#0 AAAGATTAAATCTTGAATTTAAAACATGCAAAGAAACAGTATATATGAAGGGCTAAACCG 720 consensus_170#1 GAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAATTCTAT-TCA 699 * * * * *** * * * * *** * * * * * *** * consensus_170#0 AGCTAATTAACTTAGATTGAAAAACAATTCTCACTTATTTTCATCATGCCGAATTGATTA 780 consensus_170#1 CACCCTCCCCCCCGGAT--GTCTTTGATCCTACACTATCCTAGTCCTTTT---TTGATTG 754 * * *** ** ** *** * ** * ****** consensus_170#0 GGATTTAATTGGCATAATGGCTTCATTAGGGATGATGGAACATCAAGGCTAAGATTAGGC 840 consensus_170#1 GG---TGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA--------- 802 ** * * ** * * **** ****** * ** ** consensus_170#0 TCTGATACACAATGTTGGAGTTTAATCCACTTAACTACTTAAGTTCTTAGCCTAAACATG 900 consensus_170#1 ------------------------------------------------------------ consensus_170#0 ATCACCTCTGCTTAATGCGGAAATTGATCTAACTGACCTGAGATGAAGCCATTGAACCAG 960 consensus_170#1 ------------------------------------------------------------ consensus_170#0 ATGTTAGGTTTTGTTTTTGTTCCTTCGATCCTTCTTTCTTCTTCTCTGTTAAGGAAAAGA 1020 consensus_170#1 ------------------------------------------------------------ consensus_170#0 ACACACAAGAGATGCCTCACGAACCATCAAACATTCATTGTACGTAAAATAAATTCTAAT 1080 consensus_170#1 ------------------------------------------------------------ consensus_170#0 GACTAATATGTCTCACCATTTATTATTAGCTTTCTCACTAGAGTACTCATTTTTTGATAG 1140 consensus_170#1 ------------------------------------------------------------ consensus_170#0 CCTACTGACTGACTAATGCCCCAAAAAAGGCAGCCTACTAGCTAGTATATTACCATAACC 1200 consensus_170#1 ------------------------------------------------------------ consensus_170#0 ATCTTCCTCCATGGCAACCACAATTGACTCGCTGCTTATTTGCTGTGTAGAAAAGTGTGT 1260 consensus_170#1 ------------------------------------------------------------ consensus_170#0 ATTGAGTACTAGTACTAAGAGGGTTCAGGCGTCCAGCGCTGGGTGATATGACCAAGCCTA 1320 consensus_170#1 ------------------------------------------------------------ consensus_170#0 CTATGGATACAACAGTTGTTCATATCATTGATCAACAAGAAGATCAAGTCGTCTTAAGTG 1380 consensus_170#1 ------------------------------------------------------------ consensus_170#0 CTGAAATCCAATTCGGCCACCTGCTACATTGCTGACTTCAACTGGCCACCAAATGCGCAT 1440 consensus_170#1 ------------------------------------------------------------ consensus_170#0 ACGAGCTCTGTTTTGGGTCCATGAGTATTTGATAAAAAGCTCCTAGAGTCCTCTCTCTAA 1500 consensus_170#1 ------------------------------------------------------------ consensus_170#0 TGGTTCTAGCCTCATCTCTAAATCCCACCTCAATCGGCCGCAATAATAGAAACAAGGTGT 1560 consensus_170#1 ------------------------------------------------------------ consensus_170#0 TGCATCACTTATAATGGGCCTATGGGTTTGTAACTCCATCTGGGACCCCAGCCCAAGTGG 1620 consensus_170#1 ------------------------------------------------------------ consensus_170#0 GGTGCACCCCAACCTAATGGAGCATGACAGAACCCTAGGTCGTCCTCCCATATCCATAAA 1680 consensus_170#1 ------------------------------------------------------------ consensus_170#0 TAGCTATGTACCCCTTCAGGGCCTAGGGACCCCTAGATCATCCTCCCACCTTCATAAAAT 1740 consensus_170#1 ------------------------------------------------------------ consensus_170#0 AGCTAGGTACCCCTTCAAGGTTTATTGGGTTTTGTTTAGTAAAAAGTTTAGCAATCACTA 1800 consensus_170#1 ------------------------------------------------------------ consensus_170#0 CTTTTCCTTGTACTTACGTGTGTCGGCTTGACCGCTTAATTATTCGCCTTTGGAAACCCA 1860 consensus_170#1 ------------------------------------------------------------ consensus_170#0 CCTTATCTTGAGCTTTAATTCATAATTGTAATTCATAATGCTTTTATCTTGTTTTTGCTT 1920 consensus_170#1 ------------------------------------------------------------ consensus_170#0 GTTTCCTCGATTTGCTTGCAGGAATAAGGTTGGTCTGCATCGGCACGATCAACAGCCCAC 1980 consensus_170#1 ------------------------------------------------------------ consensus_170#0 AAAGAGGTGTGTCGATTCCTAAGGCACAACACAACAACGCCTTGTACGGTTTTAGTCTGG 2040 consensus_170#1 ------------------------------------------------------------ consensus_170#0 TCGTCAATGTTTTCTCTCCCAGATCGTGGTTATCTCAACTCACCGAAAGGTCGGGCCAAT 2100 consensus_170#1 ------------------------------------------------------------ consensus_170#0 CAGAGCTTTGAGCGTGTCAAGTCGAACTCAGAGTTTATCAAGTGGTATCAGAGCAGGAAT 2160 consensus_170#1 ------------------------------------------------------------ consensus_170#0 TCTATTCACACCCTCCCCCCCGGATGTCTTTGATCCTACACTATCCTAGTCCTTTTTTGA 2220 consensus_170#1 ------------------------------------------------------------ consensus_170#0 TTGGGTGGTATATTTATGGCACTGATTATAAGCCATGGAAGAAGAAAAATA 2271 consensus_170#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||