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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1433 fasta sequence
[CACTCGCAGCCATTCTGCTTTGCTTTGCTGCTTCTTCCTCCTCCCTCCCTGCTTCTTTGCTTTCTTGCTAATTTGCAGGTAACTAGAGGTAGTACAGTTTAGCAAGCTCAAAGCTGAGAGAGAGAGAGGGGTTATAATCTGTCATGGAGTACGAGAGGATACACAAAGTTCAGATGGGAGTGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAGCATCGGCAGGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGGACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCAAGGACCAGTCGGATTCTTCTCGCTCGCGCTCCGACGCGAGCCATGGGAGAGCTGGCAATGGCTACGACAGCGGCGGCTTCGAGTTCTACAGGGAGGAGAGGCCGCCGCCACCGCCGCCGGCGGCGGTGGCGGTGGTCGGCGGGACGTTCTTCAGGCAGGTGCCGTCAAAGTGGAACGACGCCGAGAAGTGGCTCGCCGGGAGACACGTCGTGCACTCCAACCCAATCTTCTCCAAGAAGGCCGCCGCCGCAGCAGCGGCCGTGTCCGGCCGCGTTGCGCCGGAGGCCTCGGCGTCGTCGTCGCCGCCGTCGGTGGCGAGCAGGCAGCGCCAGCAGAAGAGGCTCCGCGTGTCGTCGGAGGCGGCGGCGGTGTCGATGCGGGACGTGGGGACGGAGATGACGCCGATGGCGAGCAAGGAGCAGTCGCGGAGCGGCACGCCCGCCGGCGCCGCCACGCCGTCGCTGAGTCCGCTCTGCTCGGTGCCGACGAGCCCGAGGGGCGCCGCGTCCGCGTCGTCGGCGTCGTCGGAGCGGGAGCTCCAGATCAGGACGCGCCGCGAGATCGCCGCGCTCGGGCTGCAGCTGGGCAAGATGAACATCGCGTCGTGGGCCAGCAAGGACGACGACGACGAGCTCCCCCGCGCCTCGCCGGAGAAGAGACCGAGACCGAGACCGAGACCTCACTCCGGCGACGGCGGCGGCGAGGCCAAGAAGAGGGAGTTCGAGGCGCGCGCCATGGCGTGGCAGGAGACGCACAAGTGCAAGCTCGCGTTGAGGTTTCAGAGGAAGGAGGTGAAGATTCAGGAATGGGAGAGCTGCCAGAAGGCCAAATTCGAAGCCAAGATGAGGCACGCAGAGGTGCAGGCAGAGCAGATGAAGGCGAGGGCGAAGCAGAAGCTGAGCAGGAGGCTGTCGGCGTTGAGCCACAAGGCGGAGGGGAAGCAGGCGAGGGTGGAGGCTCGCCGGAGCCGGCAGGCGGCGCGGCTGGCCCGCCAGGTGCACCGCATCCGGGAGACCGGCGCCGCGCCGTCGCGCCTCCGCCGCTGCTGCAGCTGGCTGTTCCTCTGAACATCT]
[+] EMBL AK111002 [CACTCGCAGCCATTCTGCTTTGCTTTGCTGCTTCTTCCTCCTCCCTCCCTGCTTCTTTGCTTTCTTGCTAATTTGCAGGTAACTAGAGGTAGTACAGTTTAGCAAGCTCAAAGCTGAGAGAGAGAGAGGGGTTATAATCTGTCATGGAGTACGAGAGGATACACAAAGTTCAGATGGGAGTGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAGCATCGGCAGGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGGACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCAAGGACCAGTCGGATTCTTCTCGCTCGCGCTCCGACGCGAGCCATGGGAGAGCTGGCAATGGCTACGACAGCGGCGGCTTCGAGTTCTACAGGGAGGAGAGGCCGCCGCCACCGCCGCCGGCGGCGGTGGCGGTGGTCGGCGGGACGTTCTTCAGGCAGGTGCCGTCAAAGTGGAACGACGCCGAGAAGTGGCTCGCCGGGAGACACGTCGTGCACTCCAACCCAATCTTCTCCAAGAAGGCCGCCGCCGCAGCAGCGGCCGTGTCCGGCCGCGTTGCGCCGGAGGCCTCGGCGTCGTCGTCGCCGCCGTCGGTGGCGAGCAGGCAGCGCCAGCAGAAGAGGCTCCGCGTGTCGTCGGAGGCGGCGGCGGTGTCGATGCGGGACGTGGGGACGGAGATGACGCCGATGGCGAGCAAGGAGCAGTCGCGGAGCGGCACGCCCGCCGGCGCCGCCACGCCGTCGCTGAGTCCGCTCTGCTCGGTGCCGACGAGCCCGAGGGGCGCCGCGTCCGCGTCGTCGGCGTCGTCGGAGCGGGAGCTCCAGATCAGGACGCGCCGCGAGATCGCCGCGCTCGGGCTGCAGCTGGGCAAGATGAACATCGCGTCGTGGGCCAGCAAGGACGACGACGACGAGCTCCCCCGCGCCTCGCCGGAGAAGAGACCGAGACCGAGACCGAGACCTCACTCCGGCGACGGCGGCGGCGAGGCCAAGAAGAGGGAGTTCGAGGCGCGCGCCATGGCGTGGCAGGAGACGCACAAGTGCAAGCTCGCGTTGAGGTTTCAGAGGAAGGAGGTGAAGATTCAGGAATGGGAGAGCTGCCAGAAGGCCAAATTCGAAGCCAAGATGAGGCACGCAGAGGTGCAGGCAGAGCAGATGAAGGCGAGGGCGAAGCAGAAGCTGAGCAGGAGGCTGTCGGCGTTGAGCCACAAGGCGGAGGGGAAGCAGGCGAGGGTGGAGGCTCGCCGGAGCCGGCAGGCGGCGCGGCTGGCCCGCCAGGTGCACCGCATCCGGGAGACCGGCGCCGCGCCGTCGCGCCTCCGCCGCTGCTGCAGCTGGCTGTTCCTCTGAACATCT]
consensusID : consensus_1700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence
[TGGCTGCTCTATTCAAAGCTGTGGCTGCTCTCCAATGGCAACTGCAGTATGAGCAATGGGAGTGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAGATCGGCAGGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGGACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCAAGGACCAGTCGGATTCTTCTCGTTCGCGCTCCGACGCGANCCATGGGAGAGCTGGCAATGGCTACGACAGCGGCGGTTTCGAGTTCTACAA]
[+] EMBL C72537 [TGGCTGCTCTATTCAAAGCTGTGGCTGCTCTCCAATGGCAACTGCAGTATGAGCAATGGGAGTGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAGATCGGCAGGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGGACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCAAGGACCAGTCGGATTCTTCTCGTTCGCGCTCCGACGCGANCCATGGGAGAGCTGGCAATGGCTACGACAGCGGCGGTTTCGAGTTCTACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1700#0 CACTCGCAGCCATTCTGCTTTGCTTTGCTGCTTCTTCCTCCTCCCTCCCTGCTTCTTTGC 60
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 TTTCTTGCTAATTTGCAGGTAACTAGAGGTAGTACAGTTTAGCAAGCTCAAAGCTGAGAG 120
consensus_1700#1 --------------------------------------------------TGGCTGCTCT 10
****
consensus_1700#0 AGAGAGAGGGGTTATAATCTGTCATGGAGTACGAGAGGATACACAAAGTTCAGATGGGAG 180
consensus_1700#1 ATTCAAAGCTGTGGCTGCTCTCCAATGGCAACTGCAGTATGAGCAA--------TGGGAG 62
* * ** ** ** * ** ** ** *** ******
consensus_1700#0 TGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAGCATCGGCA 240
consensus_1700#1 TGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAG-ATCGGCA 121
**************************************************** *******
consensus_1700#0 GGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGG 300
consensus_1700#1 GGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGG 181
************************************************************
consensus_1700#0 ACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCA 360
consensus_1700#1 ACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCA 241
************************************************************
consensus_1700#0 AGGACCAGTCGGATTCTTCTCGCTCGCGCTCCGACGCGAGCCATGGGAGAGCTGGCAATG 420
consensus_1700#1 AGGACCAGTCGGATTCTTCTCGTTCGCGCTCCGACGCGANCCATGGGAGAGCTGGCAATG 301
********************** **************** ********************
consensus_1700#0 GCTACGACAGCGGCGGCTTCGAGTTCTACAGGGAGGAGAGGCCGCCGCCACCGCCGCCGG 480
consensus_1700#1 GCTACGACAGCGGCGGTTTCGAGTTCTACAA----------------------------- 332
**************** *************
consensus_1700#0 CGGCGGTGGCGGTGGTCGGCGGGACGTTCTTCAGGCAGGTGCCGTCAAAGTGGAACGACG 540
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 CCGAGAAGTGGCTCGCCGGGAGACACGTCGTGCACTCCAACCCAATCTTCTCCAAGAAGG 600
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 CCGCCGCCGCAGCAGCGGCCGTGTCCGGCCGCGTTGCGCCGGAGGCCTCGGCGTCGTCGT 660
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 CGCCGCCGTCGGTGGCGAGCAGGCAGCGCCAGCAGAAGAGGCTCCGCGTGTCGTCGGAGG 720
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 CGGCGGCGGTGTCGATGCGGGACGTGGGGACGGAGATGACGCCGATGGCGAGCAAGGAGC 780
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 AGTCGCGGAGCGGCACGCCCGCCGGCGCCGCCACGCCGTCGCTGAGTCCGCTCTGCTCGG 840
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 TGCCGACGAGCCCGAGGGGCGCCGCGTCCGCGTCGTCGGCGTCGTCGGAGCGGGAGCTCC 900
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 AGATCAGGACGCGCCGCGAGATCGCCGCGCTCGGGCTGCAGCTGGGCAAGATGAACATCG 960
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 CGTCGTGGGCCAGCAAGGACGACGACGACGAGCTCCCCCGCGCCTCGCCGGAGAAGAGAC 1020
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 CGAGACCGAGACCGAGACCTCACTCCGGCGACGGCGGCGGCGAGGCCAAGAAGAGGGAGT 1080
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 TCGAGGCGCGCGCCATGGCGTGGCAGGAGACGCACAAGTGCAAGCTCGCGTTGAGGTTTC 1140
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 AGAGGAAGGAGGTGAAGATTCAGGAATGGGAGAGCTGCCAGAAGGCCAAATTCGAAGCCA 1200
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 AGATGAGGCACGCAGAGGTGCAGGCAGAGCAGATGAAGGCGAGGGCGAAGCAGAAGCTGA 1260
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 GCAGGAGGCTGTCGGCGTTGAGCCACAAGGCGGAGGGGAAGCAGGCGAGGGTGGAGGCTC 1320
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 GCCGGAGCCGGCAGGCGGCGCGGCTGGCCCGCCAGGTGCACCGCATCCGGGAGACCGGCG 1380
consensus_1700#1 ------------------------------------------------------------
consensus_1700#0 CCGCGCCGTCGCGCCTCCGCCGCTGCTGCAGCTGGCTGTTCCTCTGAACATCT 1433
consensus_1700#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||