These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1869 fasta sequence [TCTTCCTCGCCGATGAGATCCCTCCCCCAAGCTAGCACGCACGCAAACTAGGCCTTTCTACCACATCTCTCCAACAGTTACAGCCCCATGGATCCATAGCCAGTTAGCCACGACCCATATATTGTGTCTTCCTAAAGGAGTTCTCATCCGACCTGTGGTATCGCAGAAACCTCATCTCCACCTTCCATCGCCATAGCCAGAGTCGCCGGAGGAGTTGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTTGTCACCTGAGGGGTGATCTGATCAGAGGAGATCGACGACGACGACGACGACGACGACGGCGAGGCAGGAGGACACGGTGCGCGTGAACATCGAGACGATGCTGGAGCATCTGACCACGCCGGCGGCGAGGCTGGGCGACGGCTACTCCATCTACCGTGTCCCGGCGAACGTCGACAGGAAGCACTACGAGCCGAGGCTGGTCTCCGTCGGCCCGTACCACCGGAGCAAGCACCACCTCAGCGCCATGGAGGACCGGAAGCGCCTCTACCTCCTCCGGTTCCTCGACGACGGTGGCGAGAGCGGCCACCGCCGCGGACTTCTGCTCCAGGACTGCATCGACAGGGTGCGCGAGCTCGAGCCGCGGGCGCGCGCGTGCTACTTCGAGAGCCCGGCCACCGGTGACGACGGGGAAGACGACGACGGCGACATGTTCGTCGAAATGCTCCTCCTCGACGGCTGCTTCGTGGTCCAGTTCTTCATCCAGTGGTTCTCCGGCGTCGCCGACCCCATCTTCAACGTCGGCTGGAACCTCCCGCTGCTGCACACCGACCTGCTCATGCTCGAGAACCAGATCCCCTACTTCATCCTCCTCGCGCTCTACGACGCCTACACGCATGACGGCGACGGCGACCTCGACCGGCCGGCGCGGCGGCCCAAGCCGTCGCTGACGAGCATCATCACCGCCTACTTCAGCCAGAAGGAAGGTCGGCAGCCGGCGGCGACGGAGACGGCGCAGCTGCAGGAGGAGGACGACATCGACCACCTCCTCCACCTCTACCACTCCACCTTCGTCAAGCCACCCGATCACCTGCCGGCGCGGCGGCACCGCCACGGCGGCGGCGGCAGCAGACCGCCGAGGACGATCCGCTGCGCCAAGGAGCTGGCCATGCACGGGGTGAGGTTCGTGCCCAAGGTCGGGACGAGCAACATCCTCGACGTCGCGTTCCACGACGGCGTGTTCGAGATCCCGCGCGTCGCCGTCGACGACTCCACCTGCACCCGCTTCATGAACCTCGCCGCCTTTGAGCAGTGCCGCGGCGGCGACGCCGAGACACCGGCGGCGGGGAAGCACCTGACCAGCTACGTGGTGCTGATGGACTACCTGATCAACACGGCGGAGGACGTGGTGATCCTGGAGCGCGCCGACGTGATGGAGAACAATCTGGCGAACGAGGAGGCGGCGGCGGCGTTCTTCAACCAGCTCCGCGTCTGCTCCTACATCGACTACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGTGGCCCAAGTACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATCGTCGGCTTCTGCTTCGCCACCACCTTCGCCGTCGTCACCTTCTTCAACACCATCGTCAACATACTCAAGACGTTCTTCCATGTCTTGCATTGATCATCCAATGATCGATATGTGCAGTGCCTTGCTCACTGCAGAGAATTATTATCTTTGTTTTAAATCTATCTATCGATCTGTTCTTCTACCGCCATAAGTAAAAAAACATAAGACATGTATTGAAGACGTTAATCATAGACATGTCTACATATTGCTTATTGGAGAC] [+] EMBL AK070361 [TCTTCCTCGCCGATGAGATCCCTCCCCCAAGCTAGCACGCACGCAAACTAGGCCTTTCTACCACATCTCTCCAACAGTTACAGCCCCATGGATCCATAGCCAGTTAGCCACGACCCATATATTGTGTCTTCCTAAAGGAGTTCTCATCCGACCTGTGGTATCGCAGAAACCTCATCTCCACCTTCCATCGCCATAGCCAGAGTCGCCGGAGGAGTTGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTTGTCACCTGAGGGGTGATCTGATCAGAGGAGATCGACGACGACGACGACGACGACGACGGCGAGGCAGGAGGACACGGTGCGCGTGAACATCGAGACGATGCTGGAGCATCTGACCACGCCGGCGGCGAGGCTGGGCGACGGCTACTCCATCTACCGTGTCCCGGCGAACGTCGACAGGAAGCACTACGAGCCGAGGCTGGTCTCCGTCGGCCCGTACCACCGGAGCAAGCACCACCTCAGCGCCATGGAGGACCGGAAGCGCCTCTACCTCCTCCGGTTCCTCGACGACGGTGGCGAGAGCGGCCACCGCCGCGGACTTCTGCTCCAGGACTGCATCGACAGGGTGCGCGAGCTCGAGCCGCGGGCGCGCGCGTGCTACTTCGAGAGCCCGGCCACCGGTGACGACGGGGAAGACGACGACGGCGACATGTTCGTCGAAATGCTCCTCCTCGACGGCTGCTTCGTGGTCCAGTTCTTCATCCAGTGGTTCTCCGGCGTCGCCGACCCCATCTTCAACGTCGGCTGGAACCTCCCGCTGCTGCACACCGACCTGCTCATGCTCGAGAACCAGATCCCCTACTTCATCCTCCTCGCGCTCTACGACGCCTACACGCATGACGGCGACGGCGACCTCGACCGGCCGGCGCGGCGGCCCAAGCCGTCGCTGACGAGCATCATCACCGCCTACTTCAGCCAGAAGGAAGGTCGGCAGCCGGCGGCGACGGAGACGGCGCAGCTGCAGGAGGAGGACGACATCGACCACCTCCTCCACCTCTACCACTCCACCTTCGTCAAGCCACCCGATCACCTGCCGGCGCGGCGGCACCGCCACGGCGGCGGCGGCAGCAGACCGCCGAGGACGATCCGCTGCGCCAAGGAGCTGGCCATGCACGGGGTGAGGTTCGTGCCCAAGGTCGGGACGAGCAACATCCTCGACGTCGCGTTCCACGACGGCGTGTTCGAGATCCCGCGCGTCGCCGTCGACGACTCCACCTGCACCCGCTTCATGAACCTCGCCGCCTTTGAGCAGTGCCGCGGCGGCGACGCCGAGACACCGGCGGCGGGGAAGCACCTGACCAGCTACGTGGTGCTGATGGACTACCTGATCAACACGGCGGAGGACGTGGTGATCCTGGAGCGCGCCGACGTGATGGAGAACAATCTGGCGAACGAGGAGGCGGCGGCGGCGTTCTTCAACCAGCTCCGCGTCTGCTCCTACATCGACTACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGTGGCCCAAGTACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATCGTCGGCTTCTGCTTCGCCACCACCTTCGCCGTCGTCACCTTCTTCAACACCATCGTCAACATACTCAAGACGTTCTTCCATGTCTTGCATTGATCATCCAATGATCGATATGTGCAGTGCCTTGCTCACTGCAGAGAATTATTATCTTTGTTTTAAATCTATCTATCGATCTGTTCTTCTACCGCCATAAGTAAAAAAACATAAGACATGTATTGAAGACGTTAATCATAGACATGTCTACATATTGCTTATTGGAGAC] consensusID : consensus_1702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [GCACGGGGTGAAGTTCGTGCGCAAGCCGGAGACGACCAACGTCCTCGACGTCACGTTCTGCAGGGACACCGGCGTCTTCCAGATCCCTCGTGTCGCCATCGAGGACTCCACCTGCATCAGGTACATGAACCTCGTCGCCTTCGAGCAGTGCCGCGGCGAGGCGGCGGTGGCGGAGAAGCACCTGACCAGCTACGTGGTGCTCATGGACTACCTGATCAACACGGCGGAGGACGTGGTGATCCTGGACAGGGCGGACGTGATGGAGAACAAACTGGCCAACGAGGAGGAGGCCGCCAAGTTCTTCAACCAGCTCCGCCTCAGCTCCTACATCAACTACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGTGGCCAAAATACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATTTTCGGTTTCTGCTTGGCCACCACATTCGCCGTCATCACCTTGTTCAACACCATCGTCACCATATTGCAGACGTTTTTCCATCTCTTTAAATGATCATTAAATCCATCGATATATGCAAACTGATCAATATCGTTCTATCAATTAATCTCTCTAGCTACATCCATATGTAATTTACATATCTACTTTGTTAATTCTCACAGTTGCTATTTTTTTTTAAAAAAAAA] [+] EMBL CA756925 [GCACGGGGTGAAGTTCGTGCGCAAGCCGGAGACGACCAACGTCCTCGACGTCACGTTCTGCAGGGACACCGGCGTCTTCCAGATCCCTCGTGTCGCCATCGAGGACTCCACCTGCATCAGGTACATGAACCTCGTCGCCTTCGAGCAGTGCCGCGGCGAGGCGGCGGTGGCGGAGAAGCACCTGACCAGCTACGTGGTGCTCATGGACTACCTGATCAACACGGCGGAGGACGTGGTGATCCTGGACAGGGCGGACGTGATGGAGAACAAACTGGCCAACGAGGAGGAGGCCGCCAAGTTCTTCAACCAGCTCCGCCTCAGCTCCTACATCAACTACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGTGGCCAAAATACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATTTTCGGTTTCTGCTTGGCCACCACATTCGCCGTCATCACCTTGTTCAACACCATCGTCACCATATTGCAGACGTTTTTCCATCTCTTTAAATGATCATTAAATCCATCGATATATGCAAACTGATCAATATCGTTCTATCAATTAATCTCTCTAGCTACATCCATATGTAATTTACATATCTACTTTGTTAATTCTCACAGTTGCTATTTTTTTTTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1702#0 TCTTCCTCGCCGATGAGATCCCTCCCCCAAGCTAGCACGCACGCAAACTAGGCCTTTCTA 60 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 CCACATCTCTCCAACAGTTACAGCCCCATGGATCCATAGCCAGTTAGCCACGACCCATAT 120 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 ATTGTGTCTTCCTAAAGGAGTTCTCATCCGACCTGTGGTATCGCAGAAACCTCATCTCCA 180 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 CCTTCCATCGCCATAGCCAGAGTCGCCGGAGGAGTTGGAGAAGAAGAAGAAGAAGAAGAA 240 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 GAAGAAGAAGAAGAAGAAGAAGAAGTTTGTCACCTGAGGGGTGATCTGATCAGAGGAGAT 300 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 CGACGACGACGACGACGACGACGACGGCGAGGCAGGAGGACACGGTGCGCGTGAACATCG 360 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 AGACGATGCTGGAGCATCTGACCACGCCGGCGGCGAGGCTGGGCGACGGCTACTCCATCT 420 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 ACCGTGTCCCGGCGAACGTCGACAGGAAGCACTACGAGCCGAGGCTGGTCTCCGTCGGCC 480 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 CGTACCACCGGAGCAAGCACCACCTCAGCGCCATGGAGGACCGGAAGCGCCTCTACCTCC 540 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 TCCGGTTCCTCGACGACGGTGGCGAGAGCGGCCACCGCCGCGGACTTCTGCTCCAGGACT 600 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 GCATCGACAGGGTGCGCGAGCTCGAGCCGCGGGCGCGCGCGTGCTACTTCGAGAGCCCGG 660 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 CCACCGGTGACGACGGGGAAGACGACGACGGCGACATGTTCGTCGAAATGCTCCTCCTCG 720 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 ACGGCTGCTTCGTGGTCCAGTTCTTCATCCAGTGGTTCTCCGGCGTCGCCGACCCCATCT 780 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 TCAACGTCGGCTGGAACCTCCCGCTGCTGCACACCGACCTGCTCATGCTCGAGAACCAGA 840 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 TCCCCTACTTCATCCTCCTCGCGCTCTACGACGCCTACACGCATGACGGCGACGGCGACC 900 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 TCGACCGGCCGGCGCGGCGGCCCAAGCCGTCGCTGACGAGCATCATCACCGCCTACTTCA 960 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 GCCAGAAGGAAGGTCGGCAGCCGGCGGCGACGGAGACGGCGCAGCTGCAGGAGGAGGACG 1020 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 ACATCGACCACCTCCTCCACCTCTACCACTCCACCTTCGTCAAGCCACCCGATCACCTGC 1080 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 CGGCGCGGCGGCACCGCCACGGCGGCGGCGGCAGCAGACCGCCGAGGACGATCCGCTGCG 1140 consensus_1702#1 ------------------------------------------------------------ consensus_1702#0 CCAAGGAGCTGGCCATGCACGGGGTGAGGTTCGTGCCCAAGGTCGGGACGAGCAACATCC 1200 consensus_1702#1 ----------------GCACGGGGTGAAGTTCGTGCGCAAGCCGGAGACGACCAACGTCC 44 *********** ******** **** * ***** **** *** consensus_1702#0 TCGACGTCGCGTTCCACGA------CGGCGTGTTCGAGATCCCGCGCGTCGCCGTCGACG 1254 consensus_1702#1 TCGACGTCACGTTCTGCAGGGACACCGGCGTCTTCCAGATCCCTCGTGTCGCCATCGAGG 104 ******** ***** * ****** *** ******* ** ****** **** * consensus_1702#0 ACTCCACCTGCACCCGCTTCATGAACCTCGCCGCCTTTGAGCAGTGCCGCGGCGGCGACG 1314 consensus_1702#1 ACTCCACCTGCATCAGGTACATGAACCTCGTCGCCTTCGAGCAGTGCCGCGGCG------ 158 ************ * * * *********** ****** **************** consensus_1702#0 CCGAGACACCGGCGGCGGGGAAGCACCTGACCAGCTACGTGGTGCTGATGGACTACCTGA 1374 consensus_1702#1 ---AGGCGGCGGTGGCGGAGAAGCACCTGACCAGCTACGTGGTGCTCATGGACTACCTGA 215 ** * *** ***** *************************** ************* consensus_1702#0 TCAACACGGCGGAGGACGTGGTGATCCTGGAGCGCGCCGACGTGATGGAGAACAATCTGG 1434 consensus_1702#1 TCAACACGGCGGAGGACGTGGTGATCCTGGACAGGGCGGACGTGATGGAGAACAAACTGG 275 ******************************* * ** ***************** **** consensus_1702#0 CGAACGAGGAGGCGGCGGCGGCGTTCTTCAACCAGCTCCGCGTCTGCTCCTACATCGACT 1494 consensus_1702#1 CCAACGAGGAGGAGGCCGCCAAGTTCTTCAACCAGCTCCGCCTCAGCTCCTACATCAACT 335 * ********** *** ** ******************* ** *********** *** consensus_1702#0 ACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGT 1554 consensus_1702#1 ACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGT 395 ************************************************************ consensus_1702#0 GGCCCAAGTACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATCGTCG 1614 consensus_1702#1 GGCCAAAATACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATTTTCG 455 **** ** *********************************************** *** consensus_1702#0 GCTTCTGCTTCGCCACCACCTTCGCCGTCGTCACCTTCTTCAACACCATCGTCAACATAC 1674 consensus_1702#1 GTTTCTGCTTGGCCACCACATTCGCCGTCATCACCTTGTTCAACACCATCGTCACCATAT 515 * ******** ******** ********* ******* **************** **** consensus_1702#0 TCAAGACGTTCTTCCATGTCTTGCATTGATCATCCAATG-ATCGATATGTGCAGTGCCTT 1733 consensus_1702#1 TGCAGACGTTTTTCCATCTCTTTAAATGATCATTAAATCCATCGATATATGCAA------ 569 * ******* ****** **** * ******* *** ******** **** consensus_1702#0 GCTCACTGCAGAGAATTATTATCTTTGTTTTAAATCTATCTATCGATCTGTTCTTCTACC 1793 consensus_1702#1 ----ACTG------ATCAATATCGTT---------CTATCAATTAATCTCTCTAGCTACA 610 **** ** * **** ** ***** ** **** * **** consensus_1702#0 GCCATAAGTAAAAAAACATAAGACATGTATTGAAGACGTTAATCATAGACATGTCTACAT 1853 consensus_1702#1 TCCATATGTAA------TTTACATATCTACTT----TGTTAATTCTCACAGTTGCTATTT 660 ***** **** * * * ** ** * ****** * * *** * consensus_1702#0 ATTGCTTATTGGAGAC 1869 consensus_1702#1 TTTTTTAAAAAAAAA- 675 ** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||