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Oryza sativa
cluster # 1705 cluster # 1705       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1705#0 length = 1994 sequences # 2  

consensusID : consensus_1705#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1994
fasta sequence
                              [GGGATTGAGTGAGTGCGTTGTAACGGTGGGCATGGAGTGGCCTTGTAGCTAGGCTTATCATGATGATTGATGATATCGGAGTAGAATTTATCATCAAGGCCCAATTAAGGGGCAGGGCTCGATCAGCTGTTTGTGTAGTTGGAGCGCGCGGTGGAAGATGAACAAGCTCAGCAACCTAGCTAGCTAGTCGTATACCGATCGATCGATCGATGAATATGGAGTCCCTGGCAGCAGGAGCATGGTGGGTGGTTGTGCTTCTTCTACTCGTCCTTACAATTGTGGCCTCCTGGTACCGGTCATGGTGGAAGACGACCGAAGCGGGGGGGCCGCTGCTTCCTCCTCCGGCAGCTGGTGCAGGTCCATGGTGGGTGTGGGTGTGGCAGTGGCGGGAGACGGCGGCCTTCCTGGCCTCCCATGGCAGCGGGCGGGGATTCTACCACTTCGTGCAGGAGCGCTACAAGTTGTACAAGGGGGAGGGGGAGGGGGAGGCAACCTGCTGCTTCCGCACCGCGCTCATGGGGCGCGTCCACGTGTTCGTGTCCGCCTCCCACCCCGCCGCCTCCCAACTCCTCACCGCCGAACCTCCCCACTTGCCCAAGCGCTACGCCCGCACCGCCGCCGACCTGCTCGGCCCCCACAGCATCCTCTGCTCCACCTCCCACGCCCACCACCGCCACGCCCGCCGCGCCCTCGCCACCACCCTCTTCGCCACCCCTTCCACCGCCGCTTTCGCCGCCGCCTTCGACCGCCTCGTCATCCGCCACTGGACTACGCTTCTTCCGCCTCATAATCAAAACCAAGTCGTCGTGGTGCTGGACGCCGCTCTCCACATAAGCTACCGCGCCATCTGCGAGATGCTGCTGGGCGCCGGCGGCGGAAAGCTGAGGCCGCTGCAGAGCGACGTGTTCGCCGTCACGCAGGCCATGCTGGCGCTGCCGCTGCGCTGGCTGCCCGGCACGCGCTTCCGCAGGGGCCTGCACGCCAGGAAGCGCATCATGGCGGCGCTCAGGGAGGAGATGGCGGCCAGAAATCACCATCACCATCACCATCACCATCACCACGACTTGCTCAGCGTGCTCATGCAGAGGCGGCAGCTTGGCCATCCCGACGCCCTCACTGAGGACCAGATTCTGGACAACATGCTCACCCTCATCATCGCCGGCCAGGTTACCACGGCCACCGCCATCACCTGGATGGTCAAGTATCTCAGCGACAACCGCCTAATCCAGGACAAGCTACGGGCAGAAGCATTTCGGCTGGAGCTTAAGGGTGATTATTCTCTTACTATGCAACACCTAAACGCCATGGACTATGCGTACAAGGCAGTGAAAGAGTCGCTGAGGATGGCCACTATAGTTTCCTGGTTTCCAAGGGTGGCGCTCAAGGACTGCCAGGTTGCAGGGTTTCACATAAAGAAGGACTGGATTGTAAATATTGACGCCAGGTCTCTCCACTACGACCCGGATGTTTTCGACAACCCAACGGTGTTTGATCCTTCTAGGTTCGACGAAGAGGGAGAGGGAGATGATGCGAAGCTTGGGCGTGCACAACCACAGAAGAGGAGGCTGCTGGTATTTGGAGCAGGCGGGAGGACATGTCTGGGGATGAACCACGCCAAGATCATGATGCTTATCTTCCTACACCGCCTTCTCACCAATTTCAGATGGGAGATGGCAGATGACGATCCAAGCCTTGAGAAATGGGCAATGTTCCCCAGGTTAAAGAACGGATGCCCCATTCTGCTCACACCCATCCACAATTCTTGATAATGTTCCAGATTAATTAGATTCTTCATGATGACTTGTGGACCGTGGCTGCCTAGCTACTTTATCTGTTTAATTAGTAAGGTAGTATTAACAAAAACTGCTGTCAATTTATTCGAAACTAGCGGTATTGTACTGTAACTAATAGCCTAGAGATGGAATTCGGAGGAAGGATATTCCTTTGTTATTTGTAATAAATAAAAAAGACCTGCTATCTGGAGTAGATGTATC]

[+] EMBL AK101021             [GGGATTGAGTGAGTGCGTTGTAACGGTGGGCATGGAGTGGCCTTGTAGCTAGGCTTATCATGATGATTGATGATATCGGAGTAGAATTTATCATCAAGGCCCAATTAAGGGGCAGGGCTCGATCAGCTGTTTGTGTAGTTGGAGCGCGCGGTGGAAGATGAACAAGCTCAGCAACCTAGCTAGCTAGTCGTATACCGATCGATCGATCGATGAATATGGAGTCCCTGGCAGCAGGAGCATGGTGGGTGGTTGTGCTTCTTCTACTCGTCCTTACAATTGTGGCCTCCTGGTACCGGTCATGGTGGAAGACGACCGAAGCGGGGGGGCCGCTGCTTCCTCCTCCGGCAGCTGGTGCAGGTCCATGGTGGGTGTGGGTGTGGCAGTGGCGGGAGACGGCGGCCTTCCTGGCCTCCCATGGCAGCGGGCGGGGATTCTACCACTTCGTGCAGGAGCGCTACAAGTTGTACAAGGGGGAGGGGGAGGGGGAGGCAACCTGCTGCTTCCGCACCGCGCTCATGGGGCGCGTCCACGTGTTCGTGTCCGCCTCCCACCCCGCCGCCTCCCAACTCCTCACCGCCGAACCTCCCCACTTGCCCAAGCGCTACGCCCGCACCGCCGCCGACCTGCTCGGCCCCCACAGCATCCTCTGCTCCACCTCCCACGCCCACCACCGCCACGCCCGCCGCGCCCTCGCCACCACCCTCTTCGCCACCCCTTCCACCGCCGCTTTCGCCGCCGCCTTCGACCGCCTCGTCATCCGCCACTGGACTACGCTTCTTCCGCCTCATAATCAAAACCAAGTCGTCGTGGTGCTGGACGCCGCTCTCCACATAAGCTACCGCGCCATCTGCGAGATGCTGCTGGGCGCCGGCGGCGGAAAGCTGAGGCCGCTGCAGAGCGACGTGTTCGCCGTCACGCAGGCCATGCTGGCGCTGCCGCTGCGCTGGCTGCCCGGCACGCGCTTCCGCAGGGGCCTGCACGCCAGGAAGCGCATCATGGCGGCGCTCAGGGAGGAGATGGCGGCCAGAAATCACCATCACCATCACCATCACCATCACCACGACTTGCTCAGCGTGCTCATGCAGAGGCGGCAGCTTGGCCATCCCGACGCCCTCACTGAGGACCAGATTCTGGACAACATGCTCACCCTCATCATCGCCGGCCAGGTTACCACGGCCACCGCCATCACCTGGATGGTCAAGTATCTCAGCGACAACCGCCTAATCCAGGACAAGCTACGGGCAGAAGCATTTCGGCTGGAGCTTAAGGGTGATTATTCTCTTACTATGCAACACCTAAACGCCATGGACTATGCGTACAAGGCAGTGAAAGAGTCGCTGAGGATGGCCACTATAGTTTCCTGGTTTCCAAGGGTGGCGCTCAAGGACTGCCAGGTTGCAGGGTTTCACATAAAGAAGGACTGGATTGTAAATATTGACGCCAGGTCTCTCCACTACGACCCGGATGTTTTCGACAACCCAACGGTGTTTGATCCTTCTAGGTTCGACGAAGAGGGAGAGGGAGATGATGCGAAGCTTGGGCGTGCACAACCACAGAAGAGGAGGCTGCTGGTATTTGGAGCAGGCGGGAGGACATGTCTGGGGATGAACCACGCCAAGATCATGATGCTTATCTTCCTACACCGCCTTCTCACCAATTTCAGATGGGAGATGGCAGATGACGATCCAAGCCTTGAGAAATGGGCAATGTTCCCCAGGTTAAAGAACGGATGCCCCATTCTGCTCACACCCATCCACAATTCTTGATAATGTTCCAGATTAATTAGATTCTTCATGATGACTTGTGGACCGTGGCTGCCTAGCTACTTTATCTGTTTAATTAGTAAGGTAGTATTAACAAAAACTGCTGTCAATTTATTCGAAACTAGCGGTATTGTACTGTAACTAATAGCCTAGAGATGGAATTCGGAGGAAGGATATTCCTTTGTTATTTGTAATAAATAAAAAAGACCTGCTATCTGGAGTAGATGTATC]
[+] EMBL CA753211             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGCCGGCCAGGTTACCACGGCCACCGCCATCACCTGGATGGTCAAGTATCTCAGCGACAACCGCCTAATCCAGGACAAGCTACGGGCAGAAGCATTTCGGCTGGAGCTTAAGGGTGATTATTCTCTTACTATGCAACACCTAAACGCCATGGACTATGCGTACAAGGCAGTGAAAGAGTCGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_1705#0 GGGATTGAGTGAGTGCGTTGTAACGGTGGGCATGGAGTGGCCTTGTAGCTAGGCTTATCA TGATGATTGATGATATCGGAGTAGAATTTATCATCAAGGCCCAATTAAGGGGCAGGGCTC GATCAGCTGTTTGTGTAGTTGGAGCGCGCGGTGGAAGATGAACAAGCTCAGCAACCTAGC TAGCTAGTCGTATACCGATCGATCGATCGATGAATATGGAGTCCCTGGCAGCAGGAGCAT GGTGGGTGGTTGTGCTTCTTCTACTCGTCCTTACAATTGTGGCCTCCTGGTACCGGTCAT GGTGGAAGACGACCGAAGCGGGGGGGCCGCTGCTTCCTCCTCCGGCAGCTGGTGCAGGTC CATGGTGGGTGTGGGTGTGGCAGTGGCGGGAGACGGCGGCCTTCCTGGCCTCCCATGGCA GCGGGCGGGGATTCTACCACTTCGTGCAGGAGCGCTACAAGTTGTACAAGGGGGAGGGGG AGGGGGAGGCAACCTGCTGCTTCCGCACCGCGCTCATGGGGCGCGTCCACGTGTTCGTGT CCGCCTCCCACCCCGCCGCCTCCCAACTCCTCACCGCCGAACCTCCCCACTTGCCCAAGC GCTACGCCCGCACCGCCGCCGACCTGCTCGGCCCCCACAGCATCCTCTGCTCCACCTCCC ACGCCCACCACCGCCACGCCCGCCGCGCCCTCGCCACCACCCTCTTCGCCACCCCTTCCA CCGCCGCTTTCGCCGCCGCCTTCGACCGCCTCGTCATCCGCCACTGGACTACGCTTCTTC CGCCTCATAATCAAAACCAAGTCGTCGTGGTGCTGGACGCCGCTCTCCACATAAGCTACC GCGCCATCTGCGAGATGCTGCTGGGCGCCGGCGGCGGAAAGCTGAGGCCGCTGCAGAGCG ACGTGTTCGCCGTCACGCAGGCCATGCTGGCGCTGCCGCTGCGCTGGCTGCCCGGCACGC GCTTCCGCAGGGGCCTGCACGCCAGGAAGCGCATCATGGCGGCGCTCAGGGAGGAGATGG CGGCCAGAAATCACCATCACCATCACCATCACCATCACCACGACTTGCTCAGCGTGCTCA TGCAGAGGCGGCAGCTTGGCCATCCCGACGCCCTCACTGAGGACCAGATTCTGGACAACA TGCTCACCCTCATCATCGCCGGCCAGGTTACCACGGCCACCGCCATCACCTGGATGGTCA AGTATCTCAGCGACAACCGCCTAATCCAGGACAAGCTACGGGCAGAAGCATTTCGGCTGG AGCTTAAGGGTGATTATTCTCTTACTATGCAACACCTAAACGCCATGGACTATGCGTACA AGGCAGTGAAAGAGTCGCTGAGGATGGCCACTATAGTTTCCTGGTTTCCAAGGGTGGCGC TCAAGGACTGCCAGGTTGCAGGGTTTCACATAAAGAAGGACTGGATTGTAAATATTGACG CCAGGTCTCTCCACTACGACCCGGATGTTTTCGACAACCCAACGGTGTTTGATCCTTCTA GGTTCGACGAAGAGGGAGAGGGAGATGATGCGAAGCTTGGGCGTGCACAACCACAGAAGA GGAGGCTGCTGGTATTTGGAGCAGGCGGGAGGACATGTCTGGGGATGAACCACGCCAAGA TCATGATGCTTATCTTCCTACACCGCCTTCTCACCAATTTCAGATGGGAGATGGCAGATG ACGATCCAAGCCTTGAGAAATGGGCAATGTTCCCCAGGTTAAAGAACGGATGCCCCATTC TGCTCACACCCATCCACAATTCTTGATAATGTTCCAGATTAATTAGATTCTTCATGATGA CTTGTGGACCGTGGCTGCCTAGCTACTTTATCTGTTTAATTAGTAAGGTAGTATTAACAA AAACTGCTGTCAATTTATTCGAAACTAGCGGTATTGTACTGTAACTAATAGCCTAGAGAT GGAATTCGGAGGAAGGATATTCCTTTGTTATTTGTAATAAATAAAAAAGACCTGCTATCT GGAGTAGATGTATC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)