cluster # 1716

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Oryza sativa
cluster # 1716 cluster # 1716 Sequences # 2 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1716#0 length = 554 sequences # 2

consensusID : consensus_1716#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 554
fasta sequence

                              [GAGAGAGAAAATCGCAGAG-GAGAGAGAAGAAGAAGAAGAAGAGCGGAAGAGAAGGAGGAGAGGAGCCATGGATGCTTCAGCGCTCAGCAACCCGCGGCTGCAGGCCATGCTAGAGGAGGAGAAGAGGAAGGCAATGGCAAACGAGTTCGTGGCGAAGCTGACTGATGTTTGCTGGGACAAATGCATCACTGGGAGCATTGGAAGCAGCTTCAGCAACAGCGAAGCCTCGTGTCTGTCCAACTGCGCAAAACGCTTTCTCGAACTGAAGATGCTCACCATGCAACGAGTTAGCAGCCCTAGGTGAAAATTCGCATAGGTCTTTCCTGCGTCGAGAATGTAGAATCTACTATAGTTGATGCTAGAAACTATACCTAAGGGGCATCACTTGCTTTTTGCTACATTTTGTCAGTTTTGGTGTTTTTCCTGCTATACGT--TCAGTGAAAAGATTGCAAGTTTTGCTCTTGCAAGGAGATTAAAAGCGCTACTGTACTTTGACTACTTTTGACCTGAAAAGAATCAGAGACAAGCTCATAGCCTGGAGCAGAAAAAAAAAA]

[+] EMBL AK120379             [GAGAGAGAAAATCGCAGAG GAGAGAGAAGAAGAAGAAGAAGAGCGGAAGAGAAGGAGGAGAGGAGCCATGGATGCTTCAGCGCTCAGCAACCCGCGGCTGCAGGCCATGCTAGAGGAGGAGAAGAGGAAGGCAATGGCAAACGAGTTCGTGGCGAAGCTGACTGATGTTTGCTGGGACAAATGCATCACTGGGAGCATTGGAAGCAGCTTCAGCAACAGCGAAGCCTCGTGTCTGTCCAACTGCGCAAAACGCTTTCTCGAACTGAAGATGCTCACCATGCAACGAGTTAGCAGCCCTAGGTGAAAATTCGCATAGGTCTTTCCTGCGTCGAGAATGTAGAATCTACTATAGTTGATGCTAGAAACTATACCTAAGGGGCATCACTTGCTTTTTGCTACATTTTGTCAGTTTTGGTGTTTTTCCTGCTATACGT  TCAGTGAAAAGATTGCAAGTTTTGCTCTTGCAAGGAGAT                                                                                 ]
[+] EMBL CA999064             [      tcgtaaaggAGAGAGAGA AGAAGAAGAAGAAGAAGAGCGGAAG   AGGAGGGGAGGAGCCATGGATGCTTCAGCGCTCAGCAACCCGCGGCTGCAGGCCATGCTAGAGGAGGAGAAGAGGAAGGCAATGGCAAACGAGTTCGTGGCGAAGCTGACTGATGTTTGCTGGGACAAATGCATCACTGGGAGCATTGGAAGCAGCTTCAGCAACAGCGAAGCCTCGTGTCTGTCCAACTGCGCGAAACGCTTTTTCGAACTGAAGATGCTCATCGTGCAACGAGTTAGCAGCCCTAGGTGAAAATTCGCATAGGTCTTTTCTGCGTCGAGAATGTAGAATCTATAATAGTTGATGCTAGAAACTA     GAGAGGCATCACTTGCTTTTTGCTGCATTTTATCAGTTTTGGTGTTTTTCCTGCTATACGTTCTCAGTGAAACGATTGCAAGTTTTGCTCTTGCAAGGAGATTAAAAGCGCTACTGTACTTTGACTACTTTTGACCTGAAAAGAATCAGAGACAAGCTCATAGCCTGGAGCAGAAAAAAAAAA]




>consensus_1716#0
GAGAGAGAAAATCGCAGAGGAGAGAGAAGAAGAAGAAGAAGAGCGGAAGAGAAGGAGGAG
AGGAGCCATGGATGCTTCAGCGCTCAGCAACCCGCGGCTGCAGGCCATGCTAGAGGAGGA
GAAGAGGAAGGCAATGGCAAACGAGTTCGTGGCGAAGCTGACTGATGTTTGCTGGGACAA
ATGCATCACTGGGAGCATTGGAAGCAGCTTCAGCAACAGCGAAGCCTCGTGTCTGTCCAA
CTGCGCAAAACGCTTTCTCGAACTGAAGATGCTCACCATGCAACGAGTTAGCAGCCCTAG
GTGAAAATTCGCATAGGTCTTTCCTGCGTCGAGAATGTAGAATCTACTATAGTTGATGCT
AGAAACTATACCTAAGGGGCATCACTTGCTTTTTGCTACATTTTGTCAGTTTTGGTGTTT
TTCCTGCTATACGTTCAGTGAAAAGATTGCAAGTTTTGCTCTTGCAAGGAGATTAAAAGC
GCTACTGTACTTTGACTACTTTTGACCTGAAAAGAATCAGAGACAAGCTCATAGCCTGGA
GCAGAAAAAAAAAA

clustalw multiple alignements is not computed in this case