These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [GGAGAGTGGTAGCTGGTGTATCAATGTTCACAGAACCAATTGCTGGTATTCCTTCTCCAGCTACTCAGACGGCTCAGGAGAGAAATACTGGCAGGGACAATGTTGAAACCATGAAGTCTTCTCGATCGACATGTACTGAACATATAATTCTTCTGTCAGATAGTGAAGAAAATTCATTGACAGCTGATGTGTCTGGTGAGGATGTTTTGTCATCAGTTAAAGATAGTGATGGATCTGGTACTTCAGATATGCAGAAAGAAGTCGAGCATTCTGAACCAAGGATGCCTACTGAAGATAGACACGTGTCACTAAAACAACAGATTTGCAGCCCGGCCAGTGATATTGTAGCATCTTCTAAACCTGTATCAAAAGATAGAAGTATAATTGCTGCCAAAGAAGGATTGGGTAGAGCAAAAATTCCAACTGTTCCAGTGAATACAAATGATACTTCCCTTTTACCAAAGAAGATTAAACCACCCACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGAGAGAGTGAGCGAGTAGAACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTCTTCTCCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCATGCAGCAGCATCAGTTACTTAGGAGAGTAGATGCATTGTTGCCATGAGAGGTAATTAAATCTG] [+] EMBL AK063595 [GGAGAGTGGTAGCTGGTGTATCAATGTTCACAGAACCAATTGCTGGTATTCCTTCTCCAGCTACTCAGACGGCTCAGGAGAGAAATACTGGCAGGGACAATGTTGAAACCATGAAGTCTTCTCGATCGACATGTACTGAACATATAATTCTTCTGTCAGATAGTGAAGAAAATTCATTGACAGCTGATGTGTCTGGTGAGGATGTTTTGTCATCAGTTAAAGATAGTGATGGATCTGGTACTTCAGATATGCAGAAAGAAGTCGAGCATTCTGAACCAAGGATGCCTACTGAAGATAGACACGTGTCACTAAAACAACAGATTTGCAGCCCGGCCAGTGATATTGTAGCATCTTCTAAACCTGTATCAAAAGATAGAAGTATAATTGCTGCCAAAGAAGGATTGGGTAGAGCAAAAATTCCAACTGTTCCAGTGAATACAAATGATACTTCCCTTTTACCAAAGAAGATTAAACCACCCACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGAGAGAGTGAGCGAGTAGAACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTCTTCTCCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCATGCAGCAGCATCAGTTACTTAGGAGAGTAGATGCATTGTTGCCATGAGAGGTAATTAAATCTG] consensusID : consensus_1719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [CACCACCATGGGCAGGGAAGAAGGGTGGAGGCGCCTGGTGGGGAGAGCCAGCACCATCCCCAGCGCCATCATGAGCCGGCGAGAAATGGCGTTCTTGGCGGCGTCGCGGTTGCTCACGCGGCGTCTACGNTCCACCACCACCACCATCACCACCACCACCCACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGANAGAGTTAGCGAGTAGAACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTCTTCTNCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCATGCAGCAGCATCAGTTACTTAGGAGGAGTAAGATGCATTGTTTGCCATGAGGAGGTAAATTAAAATCTGATCTTANGGACATGCATGCACGCATTGNTTTTG] [+] EMBL C26814 [CACCACCATGGGCAGGGAAGAAGGGTGGAGGCGCCTGGTGGGGAGAGCCAGCACCATCCCCAGCGCCATCATGAGCCGGCGAGAAATGGCGTTCTTGGCGGCGTCGCGGTTGCTCACGCGGCGTCTACGNTCCACCACCACCACCATCACCACCACCACCCACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGANAGAGTTAGCGAGTAGAACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTCTTCTNCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCATGCAGCAGCATCAGTTACTTAGGAGGAGTAAGATGCATTGTTTGCCATGAGGAGGTAAATTAAAATCTGATCTTANGGACATGCATGCACGCATTGNTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1719#0 GGAGAGTGGTAGCTGGTGTATCAATGTTCACAGAACCAATTGCTGGTATTCCTTCTCCAG 60 consensus_1719#1 ------------------------------------------------------------ consensus_1719#0 CTACTCAGACGGCTCAGGAGAGAAATACTGGCAGGGACAATGTTGAAACCATGAAGTCTT 120 consensus_1719#1 ------------------------------------------------------------ consensus_1719#0 CTCGATCGACATGTACTGAACATATAATTCTTCTGTCAGATAGTGAAGAAAATTCATTGA 180 consensus_1719#1 ------------------------------------------------------------ consensus_1719#0 CAGCTGATGTGTCTGGTGAGGATGTTTTGTCATCAGTTAAAGATAGTGATGGATCTGGTA 240 consensus_1719#1 ------------------------------------------------------------ consensus_1719#0 CTTCAGATATGCAGAAAGAAGTCGAGCATTCTGAACCAAGGATGCCTACTGAAGATAGAC 300 consensus_1719#1 ---------------------------------------------------------CAC 3 ** consensus_1719#0 ACGTGTCACTAAAACAACAGATTTGCAGC-CCGGCCAGTGATATTGTAGCATCTTCTAAA 359 consensus_1719#1 CACCATGGGCAGGGAAGAAGGGTGGAGGCGCCTGGTGGGGAGAGC-CAGCACCATCCCCA 62 * * * ** * * ** ** * * ** * **** * ** * consensus_1719#0 CCTGTATCAAAAGATAGAAGTATAATTGCTGCCAAAGAAGGATTGGGTAGAGCAAAAATT 419 consensus_1719#1 GCGCCATCATGAGCCGGCGAGA-----------AATGGCGTTCTTGGCGGCG------TC 105 * **** ** * * ** * * * ** * * * consensus_1719#0 CCAACTGTTCCAGTGAATACAAATGATACTTCCCTTTTACCAAAGAAGATTAAACCACCC 479 consensus_1719#1 GCGGTTGCTCACGCGG-CGTCTACGNTCCACCACCACCACCATCACCACC---ACCACCC 161 * ** ** * * * * * * * * **** ******* consensus_1719#0 ACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGAGAGAGTGAGCGAGTAGA 539 consensus_1719#1 ACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGANAGAGTTAGCGAGTAGA 221 ******************************************* ***** ********** consensus_1719#0 ACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTC 599 consensus_1719#1 ACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTC 281 ************************************************************ consensus_1719#0 TTCTCCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCAT 659 consensus_1719#1 TTCTNCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCAT 341 **** ******************************************************* consensus_1719#0 GCAGCAGCATCAGTTACTTAGGAG-AGTA-GATGCATTGTT-GCCATGAG-AGGTAATT- 714 consensus_1719#1 GCAGCAGCATCAGTTACTTAGGAGGAGTAAGATGCATTGTTTGCCATGAGGAGGTAAATT 401 ************************ **** *********** ******** ****** * consensus_1719#0 -AAATCTG--------------------------------- 721 consensus_1719#1 AAAATCTGATCTTANGGACATGCATGCACGCATTGNTTTTG 442 ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||