cluster # 1735

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Oryza sativa
cluster # 1735 cluster # 1735 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1735#0 length = 633 sequences # 1

consensus_1735#1 length = 552 sequences # 1

consensusID : consensus_1735#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [CGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCGGCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGGGAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGGCAACAGCACCGGGAAGGGATTGGCGGTGGCTCACGACGGTAGAGGTGCGGGAGAGGGTGCGGCGAGGAGGGGATCCACTGATGCCGGGCCTCGGGAGCGGTGCTGGGAAGGGGCAGCAGGGACTCTCGGGGTTAGCGCCACGGGGGAGGGGACGACAGGGAACGGATCCGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCGCCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGACAGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTTACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTATGCTCTGTGATATGAATTTGATCTTGATCGAACC]

[+] EMBL AK062425             [CGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCGGCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGGGAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGGCAACAGCACCGGGAAGGGATTGGCGGTGGCTCACGACGGTAGAGGTGCGGGAGAGGGTGCGGCGAGGAGGGGATCCACTGATGCCGGGCCTCGGGAGCGGTGCTGGGAAGGGGCAGCAGGGACTCTCGGGGTTAGCGCCACGGGGGAGGGGACGACAGGGAACGGATCCGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCGCCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGACAGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTTACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTATGCTCTGTGATATGAATTTGATCTTGATCGAACC]




>consensus_1735#0
CGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCG
GCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACT
AGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGG
GAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGGCAACAGCACCGGGAAGGGATTGGC
GGTGGCTCACGACGGTAGAGGTGCGGGAGAGGGTGCGGCGAGGAGGGGATCCACTGATGC
CGGGCCTCGGGAGCGGTGCTGGGAAGGGGCAGCAGGGACTCTCGGGGTTAGCGCCACGGG
GGAGGGGACGACAGGGAACGGATCCGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCGC
CACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGACA
GAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTT
ACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTAT
GCTCTGTGATATGAATTTGATCTTGATCGAACC

consensusID : consensus_1735#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence

                              [CCTCGAGTCTCTCCCTCCTCCCTCGGTCCCTCTGATTCCCTCCTCTTTCTATCTCTCTCCCACTCTTCTCCCTCCTCCCTTCTCTCTCCACCGTCGCCAGTTGTTGTCGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCGGCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGGGAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCGCCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGACAGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTTACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTATGCTCTGTGATATGAATTTG]

[+] EMBL AK063091             [CCTCGAGTCTCTCCCTCCTCCCTCGGTCCCTCTGATTCCCTCCTCTTTCTATCTCTCTCCCACTCTTCTCCCTCCTCCCTTCTCTCTCCACCGTCGCCAGTTGTTGTCGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCGGCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGGGAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCGCCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGACAGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTTACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTATGCTCTGTGATATGAATTTG]




>consensus_1735#1
CCTCGAGTCTCTCCCTCCTCCCTCGGTCCCTCTGATTCCCTCCTCTTTCTATCTCTCTCC
CACTCTTCTCCCTCCTCCCTTCTCTCTCCACCGTCGCCAGTTGTTGTCGCCTCCAACACC
GCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCGGCCAACGGGGAGG
CCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGC
GGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGGGAAGGGGCCGGCG
CGGCGCAGGGAAGGAGGTGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCGCCACCGAG
CCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGACAGAGGGAG
CAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTTACCTCGT
GTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTATGCTCTGT
GATATGAATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1735#0      CGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCG 60
consensus_1735#1      -----------------CCTCGAGTCTCTCCCTCCTCC-CTCGGTCCCTCTG--ATTCCC 40
                                         *  **** *  ** *  *  * * ** ** ***  *   * 

consensus_1735#0      GCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACT 120
consensus_1735#1      TCCTCTTTCTATCTCT----CTCCCACTCTTCTCCCTCCTCCCTTCTCTCT--CCACCGT 94
                       **       *   **    ****   ***     * **  ***** * **        *

consensus_1735#0      AGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGG 180
consensus_1735#1      CGCCAGTTGTTGTCGCCT--CCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGT 152
                       ** ** *   *  * *     *  * **  *         *        ***** * * 

consensus_1735#0      GAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGGCAACAGCACCGGGAAGGGATTGGC 240
consensus_1735#1      ACCGCTGTCACATCGGCCAACGG--GGAGGCCTAGGCCTCCAGATCT---AGCGACC--C 205
                         *  * *    ****  * **  *****    ***  *   * *    ** **    *

consensus_1735#0      GGTGGCTCACGACGGTAGAGGT-GCGGGAGAGGGTGCGGCGAGGAGGGGATCCACTGATG 299
consensus_1735#1      CATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATG 265
                        *   ** **   ** **  * **  ** ** * * * **** *   *   *   ****

consensus_1735#0      CCGGGCCTCGGGAGCGGTGCTGGGAAGGGGCAGCAGGGACTCTCGGGGTTAGCGCCACGG 359
consensus_1735#1      A-GGGAGAGGGTGGCTGCGCGGGGAAGGGGC---------------------CGGCGCGG 303
                        ***    **  ** * ** **********                     ** * ***

consensus_1735#0      GGGAGGGGACGACAGGGAACGGATCCGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCG 419
consensus_1735#1      CGCAGGGAA-----------GGAGGTGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCG 352
                       * **** *           ***   **********************************

consensus_1735#0      CCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGAC 479
consensus_1735#1      CCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGAC 412
                      ************************************************************

consensus_1735#0      AGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCT 539
consensus_1735#1      AGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCT 472
                      ************************************************************

consensus_1735#0      TACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTA 599
consensus_1735#1      TACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTA 532
                      ************************************************************

consensus_1735#0      TGCTCTGTGATATGAATTTGATCTTGATCGAACC 633
consensus_1735#1      TGCTCTGTGATATGAATTTG-------------- 552
                      ********************