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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1622 fasta sequence
[ATAACACATTACATGCATTTGCAAGCCATACGCTCTCTGTAATATGGATACCAAATTGGGAGCGCTTGCTCTCATGCTCCCGCTTCTACTGCTGATTTCCGCTACTCGCGTAGCCTACGGCGGCATCCAACCCACGCCGCCTCCCGCGAGCTTCCAAGCCGCCTTGGTCCGCATCGAGCCCGCAGGCATCAACTACACGCGCGCCGTGCAGCGCTCCCGCTCCCGCCTGTCCATGCTCGCCGCCAGAGCGGTGTCCAACGCGGGGGCGGCGCCGGGGGAGAGCGCGCAGACGCCGCTGAAGAAGGGGAGCGGCGACTACGCCATGTCGTTCGGCATCGGCACGCCGGCGACGGGGCTGTCGGGCGAGGCGGACACCGGGAGCGACCTCATCTGGACCAAGTGCGGCGCCTGCGCGCGGTGCTCGCCGCGGGGCTCCCCGTCCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTCGCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGCGGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACGCACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCGGCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGCTCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAGGCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCCCTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTTCACTCCGCTACTCACAAACCCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGGAAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGCGTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTGAGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGACGACCTGATCTGTTTCACCGGGGGTCGTCGACGACGACGTTCCCGTCCATGGTGCTGCACTTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGCCAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATCATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGGATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCCGTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTTCTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAGTCTTCCAAGAGAAATTGAACGGGCATAATACTGCATGTACGGTTACAATATACTTATAAACATAA]
[+] EMBL AK061435 [ATAACACATTACATGCATTTGCAAGCCATACGCTCTCTGTAATATGGATACCAAATTGGGAGCGCTTGCTCTCATGCTCCCGCTTCTACTGCTGATTTCCGCTACTCGCGTAGCCTACGGCGGCATCCAACCCACGCCGCCTCCCGCGAGCTTCCAAGCCGCCTTGGTCCGCATCGAGCCCGCAGGCATCAACTACACGCGCGCCGTGCAGCGCTCCCGCTCCCGCCTGTCCATGCTCGCCGCCAGAGCGGTGTCCAACGCGGGGGCGGCGCCGGGGGAGAGCGCGCAGACGCCGCTGAAGAAGGGGAGCGGCGACTACGCCATGTCGTTCGGCATCGGCACGCCGGCGACGGGGCTGTCGGGCGAGGCGGACACCGGGAGCGACCTCATCTGGACCAAGTGCGGCGCCTGCGCGCGGTGCTCGCCGCGGGGCTCCCCGTCCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTCGCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGCGGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACGCACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCGGCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGCTCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAGGCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCCCTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTTCACTCCGCTACTCACAAACCCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGGAAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGCGTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTGAGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGACGACCTGATCTGTTTCACCGGGGGTCGTCGACGACGACGTTCCCGTCCATGGTGCTGCACTTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGCCAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATCATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGGATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCCGTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTTCTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAGTCTTCCAAGAGAAATTGAACGGGCATAATACTGCATGTACGGTTACAATATACTTATAAACATAA]
consensusID : consensus_1736#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1196 fasta sequence
[AATATGGATACCAAATTGGGAGCGCTTGCTTTCATGCTCCCGCTTCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTCGCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGCGGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACGCACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCGGCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGCTCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAGGCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCCCTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTCCACTCCGCTACTCACAAACCCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGGAAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGCGTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTGAGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGACGACCTGATCTGTTTCACCGGGGGGTCGTCGACGACGACGTTCCCGTCCATGGTGCTGCACTTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGCCAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATCATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGGATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCCGTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTTCTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAGTCTTCCAAGAGAAATTGAACGGGCATAATACTGC]
[+] EMBL AK060038 [AATATGGATACCAAATTGGGAGCGCTTGCTTTCATGCTCCCGCTTCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTCGCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGCGGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACGCACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCGGCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGCTCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAGGCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCCCTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTCCACTCCGCTACTCACAAACCCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGGAAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGCGTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTGAGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGACGACCTGATCTGTTTCACCGGGGGGTCGTCGACGACGACGTTCCCGTCCATGGTGCTGCACTTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGCCAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATCATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGGATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCCGTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTTCTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAGTCTTCCAAGAGAAATTGAACGGGCATAATACTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1736#0 ATAACACATTACATGCATTTGCAAGCCATACGCTCTCTGTAATATGGATACCAAATTGGG 60
consensus_1736#1 ------------------------------------------------------------
consensus_1736#0 AGCGCTTGCTCTCATGCTCCCGCTTCTACTGCTGATTTCCGCTACTCGCGTAGCCTACGG 120
consensus_1736#1 ------------------------------------------------------------
consensus_1736#0 CGGCATCCAACCCACGCCGCCTCCCGCGAGCTTCCAAGCCGCCTTGGTCCGCATCGAGCC 180
consensus_1736#1 ------------------------------------------------------------
consensus_1736#0 CGCAGGCATCAACTACACGCGCGCCGTGCAGCGCTCCCGCTCCCGCCTGTCCATGCTCGC 240
consensus_1736#1 ------------------------------------------------------------
consensus_1736#0 CGCCAGAGCGGTGTCCAACGCGGGGGCGGCGCCGGGGGAGAGCGCGCAGACGCCGCTGAA 300
consensus_1736#1 ------------------------------------------------------------
consensus_1736#0 GAAGGGGAGCGGCGACTACGCCATGTCGTTCGGCATCGGCACGCCGGCGACGGGGCTGTC 360
consensus_1736#1 ------------------------------------------------------------
consensus_1736#0 GGGCGAGGCGGACACCGGGAGCGACCTCATCTGGACCAAGTGCGGCGCCTGCGC--GCGG 418
consensus_1736#1 --------------------------------------AATATGGATACCAAATTGGGAG 22
* * ** * * *
consensus_1736#0 TGCTCGCCGCGGGGCTCCCCGTCCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTC 478
consensus_1736#1 CGCTTGCTTTCATGCTCCCGCTTCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTC 82
*** ** ****** * *************************************
consensus_1736#0 GCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGC 538
consensus_1736#1 GCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGC 142
************************************************************
consensus_1736#0 GGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACG 598
consensus_1736#1 GGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACG 202
************************************************************
consensus_1736#0 CACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCG 658
consensus_1736#1 CACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCG 262
************************************************************
consensus_1736#0 GCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGC 718
consensus_1736#1 GCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGC 322
************************************************************
consensus_1736#0 TCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAG 778
consensus_1736#1 TCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAG 382
************************************************************
consensus_1736#0 GCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCC 838
consensus_1736#1 GCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCC 442
************************************************************
consensus_1736#0 CTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTTCACTCCGCTACTCACAAAC 898
consensus_1736#1 CTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTCCACTCCGCTACTCACAAAC 502
**************************************** *******************
consensus_1736#0 CCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGG 958
consensus_1736#1 CCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGG 562
************************************************************
consensus_1736#0 AAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGC 1018
consensus_1736#1 AAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGC 622
************************************************************
consensus_1736#0 GTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTG 1078
consensus_1736#1 GTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTG 682
************************************************************
consensus_1736#0 AGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGAC 1138
consensus_1736#1 AGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGAC 742
************************************************************
consensus_1736#0 GACCTGATCTGTTTCACCGGGGG-TCGTCGACGACGACGTTCCCGTCCATGGTGCTGCAC 1197
consensus_1736#1 GACCTGATCTGTTTCACCGGGGGGTCGTCGACGACGACGTTCCCGTCCATGGTGCTGCAC 802
*********************** ************************************
consensus_1736#0 TTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGC 1257
consensus_1736#1 TTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGC 862
************************************************************
consensus_1736#0 CAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATC 1317
consensus_1736#1 CAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATC 922
************************************************************
consensus_1736#0 ATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGG 1377
consensus_1736#1 ATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGG 982
************************************************************
consensus_1736#0 ATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCC 1437
consensus_1736#1 ATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCC 1042
************************************************************
consensus_1736#0 GTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTT 1497
consensus_1736#1 GTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTT 1102
************************************************************
consensus_1736#0 CTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAG 1557
consensus_1736#1 CTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAG 1162
************************************************************
consensus_1736#0 TCTTCCAAGAGAAATTGAACGGGCATAATACTGCATGTACGGTTACAATATACTTATAAA 1617
consensus_1736#1 TCTTCCAAGAGAAATTGAACGGGCATAATACTGC-------------------------- 1196
**********************************
consensus_1736#0 CATAA 1622
consensus_1736#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||