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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2029 fasta sequence
[CCCGCTACCTCCTCCCGGCGCTCCGGCGACTTCCCTGACTGGGTCTTCCTCGACACTGTTGCGCACACCGGCCGCTGCCACGACAACGCGACCACCGCTCGGGCGAAGTCGAGCGATGGCTACCCCATCGAGGTGTCCTTCGTGTTCGCCGATCCACCCGCCCTCACCCGCTGCTTTGTTCACTGCCCCGCCGGCCTGACGGCAGGTGAGTTCTCCATGTCGCCGCCCTCCATCACCGGCGCGGACGGCGCCTTCCTCCTCCTACGTGTCATCTTCCCCCACCGCTCTGACCGATGCATGGTCACCGACTGGTTCGTCTACAAGTCGGGCCCCGGGACGCCATCTCTCGAGCTCCTGATCCAGCGCCCCAACCCGCTTGACGTTGTATCCAGACGCGCCGGCGTCTTATCCTGTGGCGACCACTGTCTGGTCGTCGACCCCGAATGGCGATTCCATGACGACGACTGGATGAAGTTCCACCTCCATATCTTCTCGAGCAAGACCAAGCGGTGGAGCAACAAGGTCGCAAAGCTGGGTCGTGGCATGGAGGCGTTCAACCCTTTCTTCCTACCCACCAAGGTGTTGTGTGTCGTCCGAGGAGGATCAATGGCCTGGGTTGATTTCCGGAACAGCATCCTACTGCTCGACTCGGTCCCCGGGAACTGCCCCGAGGTGAGCCTGATCCGTCTGCCCCCATTGATGCCCATCAACAACGTTGACTCCGGAGGCAGTCCCGATGGACCTTGCGTGGATCTGGTCCGGGATGTCACCTGTAGAGATGGCTGGTTCAAGTTCATCGAGATGGGATTTCCGTACTTGGATCCTAATGATGCACAGTTAAACCGTGGATGGGAGGCCACCATGTTCAAGAGGAAGATCCGTTCAGATAATTATTGGCAATGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCTTGTTTGTTTCCTGAGATCTTTGACTGCAACGAGCACAAGCTAGCCCTGAACAATGTTGTGAGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATCAAGGCTGATGATCCAGACGGTTGGATCTTTGCCTTCAACACTGAGAACAATAGGCTGGAGGAAATATCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGACTTGTCCAAGCACCTGATGAACAAGGCTCTAGACGTCTTGGCGTCGAGGAGGAGCGGCGGCGGCAACGGTTCAGGGACGCGGAGAACTGGCGTCGAGGAGGAGCGGCGGTGGTGGTTCGGGGATGATGAGGAGTGACGAGGCGGATCCGGCACGGCATCGGCAGCGTGCGCGGTGGCGACGGGCGACTGCGGGTGCAGCGTTGGCGGGCGGGAGGCGCGGCGGCTCCACCTGAACCGCCGAGCTGCGGCGGGCGCAACGTCAGCGGTTTCGGCACGGCATGGTTGCGGGCGTGGCAACGACGGGCTGATGCGGGCTGGAGGCGCGGCAGCTCTACCTCCATCGCTAATCAGAGGCGGGCACGACGTCGGCGGATCCGGCACGGCACGGCTGCCAGCGCGGCGGCAACTGGTGACTACGTGTAGGGGGTGAGGAGGCGGCGCATCTGGCTGCCGCTCCGCGCCCCACGCGCGTGGATCTGGCGTGGATATTGCACGGGTGACGGTGGGTGCGGCTGTGACGGGCAACTGCGGGCAGGAGGCAAGGCGGCGGCGAATCTGGCCGCCGTTCCGCCCGTACGCGCACGGCGCGACCTCTGCGGCGGCAAGCTCGGACTCGGATGGATATGGAGGAACAGCGGCGGCCACCCCCACGACACGCCGCAATCGATGTCCGGAGCAAGCGCTAACAAAAAATTAACATATGATATAGACTGTGAGGATGTATTTGTTGAGTCAAAATTTTGTTGTCATACCAAGTTAATTTTTTAATTAGTAAGGATACCAAGCATATGATGTATATGAAAAAGGGTTTCTAATAAAAACATAGCCGC]
[+] EMBL AK064131 [CCCGCTACCTCCTCCCGGCGCTCCGGCGACTTCCCTGACTGGGTCTTCCTCGACACTGTTGCGCACACCGGCCGCTGCCACGACAACGCGACCACCGCTCGGGCGAAGTCGAGCGATGGCTACCCCATCGAGGTGTCCTTCGTGTTCGCCGATCCACCCGCCCTCACCCGCTGCTTTGTTCACTGCCCCGCCGGCCTGACGGCAGGTGAGTTCTCCATGTCGCCGCCCTCCATCACCGGCGCGGACGGCGCCTTCCTCCTCCTACGTGTCATCTTCCCCCACCGCTCTGACCGATGCATGGTCACCGACTGGTTCGTCTACAAGTCGGGCCCCGGGACGCCATCTCTCGAGCTCCTGATCCAGCGCCCCAACCCGCTTGACGTTGTATCCAGACGCGCCGGCGTCTTATCCTGTGGCGACCACTGTCTGGTCGTCGACCCCGAATGGCGATTCCATGACGACGACTGGATGAAGTTCCACCTCCATATCTTCTCGAGCAAGACCAAGCGGTGGAGCAACAAGGTCGCAAAGCTGGGTCGTGGCATGGAGGCGTTCAACCCTTTCTTCCTACCCACCAAGGTGTTGTGTGTCGTCCGAGGAGGATCAATGGCCTGGGTTGATTTCCGGAACAGCATCCTACTGCTCGACTCGGTCCCCGGGAACTGCCCCGAGGTGAGCCTGATCCGTCTGCCCCCATTGATGCCCATCAACAACGTTGACTCCGGAGGCAGTCCCGATGGACCTTGCGTGGATCTGGTCCGGGATGTCACCTGTAGAGATGGCTGGTTCAAGTTCATCGAGATGGGATTTCCGTACTTGGATCCTAATGATGCACAGTTAAACCGTGGATGGGAGGCCACCATGTTCAAGAGGAAGATCCGTTCAGATAATTATTGGCAATGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCTTGTTTGTTTCCTGAGATCTTTGACTGCAACGAGCACAAGCTAGCCCTGAACAATGTTGTGAGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATCAAGGCTGATGATCCAGACGGTTGGATCTTTGCCTTCAACACTGAGAACAATAGGCTGGAGGAAATATCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGACTTGTCCAAGCACCTGATGAACAAGGCTCTAGACGTCTTGGCGTCGAGGAGGAGCGGCGGCGGCAACGGTTCAGGGACGCGGAGAACTGGCGTCGAGGAGGAGCGGCGGTGGTGGTTCGGGGATGATGAGGAGTGACGAGGCGGATCCGGCACGGCATCGGCAGCGTGCGCGGTGGCGACGGGCGACTGCGGGTGCAGCGTTGGCGGGCGGGAGGCGCGGCGGCTCCACCTGAACCGCCGAGCTGCGGCGGGCGCAACGTCAGCGGTTTCGGCACGGCATGGTTGCGGGCGTGGCAACGACGGGCTGATGCGGGCTGGAGGCGCGGCAGCTCTACCTCCATCGCTAATCAGAGGCGGGCACGACGTCGGCGGATCCGGCACGGCACGGCTGCCAGCGCGGCGGCAACTGGTGACTACGTGTAGGGGGTGAGGAGGCGGCGCATCTGGCTGCCGCTCCGCGCCCCACGCGCGTGGATCTGGCGTGGATATTGCACGGGTGACGGTGGGTGCGGCTGTGACGGGCAACTGCGGGCAGGAGGCAAGGCGGCGGCGAATCTGGCCGCCGTTCCGCCCGTACGCGCACGGCGCGACCTCTGCGGCGGCAAGCTCGGACTCGGATGGATATGGAGGAACAGCGGCGGCCACCCCCACGACACGCCGCAATCGATGTCCGGAGCAAGCGCTAACAAAAAATTAACATATGATATAGACTGTGAGGATGTATTTGTTGAGTCAAAATTTTGTTGTCATACCAAGTTAATTTTTTAATTAGTAAGGATACCAAGCATATGATGTATATGAAAAAGGGTTTCTAATAAAAACATAGCCGC]
consensusID : consensus_1739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[AGACAAGGGGTCCGTTCAGATAATTATTGGCAATGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCTTGTTTGTTTCCTGAGATCTTTGACTGCAATGAGCACAAGCTAGCCCTGAACAATGTTATGAGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATCAAGGCTGATGATCCAGACGGTTGGATCTTTGCCATCAACACTGAGAACAATAGGCTGGAGGAAATACCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGACTTGTCCAAGCACCTGATGAACAAGGTTCTAGGGTCTCACTTGGCCAATGATATGGATAAATGCACAAACAGAGAAAAGATTCAGTTGTTAGGTACCAATCTTGTGGCCGCATTGGATGTGCTCCGGAACATAGGTAATTGATACTGAATTATGCACAACACAATGCAGGTGTACATGCATGAATGTTGATATTTACATGCGCTGAATCTATATGTCCAAAATGTCTTGTGTAATCATTAAGTGTGCTGAATCTAATATAACTGTCATTTCTTTATTAAAAAAAA]
[-] EMBL CA761641 [AGACAAGGGGTCCGTTCAGATAATTATTGGCAATGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCTTGTTTGTTTCCTGAGATCTTTGACTGCAATGAGCACAAGCTAGCCCTGAACAATGTTATGAGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATCAAGGCTGATGATCCAGACGGTTGGATCTTTGCCATCAACACTGAGAACAATAGGCTGGAGGAAATACCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGACTTGTCCAAGCACCTGATGAACAAGGTTCTAGGGTCTCACTTGGCCAATGATATGGATAAATGCACAAACAGAGAAAAGATTCAGTTGTTAGGTACCAATCTTGTGGCCGCATTGGATGTGCTCCGGAACATAGGTAATTGATACTGAATTATGCACAACACAATGCAGGTGTACATGCATGAATGTTGATATTTACATGCGCTGAATCTATATGTCCAAAATGTCTTGTGTAATCATTAAGTGTGCTGAATCTAATATAACTGTCATTTCTTTATTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1739#0 CCCGCTACCTCCTCCCGGCGCTCCGGCGACTTCCCTGACTGGGTCTTCCTCGACACTGTT 60
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 GCGCACACCGGCCGCTGCCACGACAACGCGACCACCGCTCGGGCGAAGTCGAGCGATGGC 120
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 TACCCCATCGAGGTGTCCTTCGTGTTCGCCGATCCACCCGCCCTCACCCGCTGCTTTGTT 180
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 CACTGCCCCGCCGGCCTGACGGCAGGTGAGTTCTCCATGTCGCCGCCCTCCATCACCGGC 240
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 GCGGACGGCGCCTTCCTCCTCCTACGTGTCATCTTCCCCCACCGCTCTGACCGATGCATG 300
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 GTCACCGACTGGTTCGTCTACAAGTCGGGCCCCGGGACGCCATCTCTCGAGCTCCTGATC 360
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 CAGCGCCCCAACCCGCTTGACGTTGTATCCAGACGCGCCGGCGTCTTATCCTGTGGCGAC 420
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 CACTGTCTGGTCGTCGACCCCGAATGGCGATTCCATGACGACGACTGGATGAAGTTCCAC 480
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 CTCCATATCTTCTCGAGCAAGACCAAGCGGTGGAGCAACAAGGTCGCAAAGCTGGGTCGT 540
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 GGCATGGAGGCGTTCAACCCTTTCTTCCTACCCACCAAGGTGTTGTGTGTCGTCCGAGGA 600
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 GGATCAATGGCCTGGGTTGATTTCCGGAACAGCATCCTACTGCTCGACTCGGTCCCCGGG 660
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 AACTGCCCCGAGGTGAGCCTGATCCGTCTGCCCCCATTGATGCCCATCAACAACGTTGAC 720
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 TCCGGAGGCAGTCCCGATGGACCTTGCGTGGATCTGGTCCGGGATGTCACCTGTAGAGAT 780
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 GGCTGGTTCAAGTTCATCGAGATGGGATTTCCGTACTTGGATCCTAATGATGCACAGTTA 840
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 AACCGTGGATGGGAGGCCACCATGTTCAAGAGGAAGATCCGTTCAGATAATTATTGGCAA 900
consensus_1739#1 ---------------------------AGACAAGGGGTCCGTTCAGATAATTATTGGCAA 33
* * ***********************
consensus_1739#0 TGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCT 960
consensus_1739#1 TGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCT 93
************************************************************
consensus_1739#0 TGTTTGTTTCCTGAGATCTTTGACTGCAACGAGCACAAGCTAGCCCTGAACAATGTTGTG 1020
consensus_1739#1 TGTTTGTTTCCTGAGATCTTTGACTGCAATGAGCACAAGCTAGCCCTGAACAATGTTATG 153
***************************** *************************** **
consensus_1739#0 AGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATC 1080
consensus_1739#1 AGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATC 213
************************************************************
consensus_1739#0 AAGGCTGATGATCCAGACGGTTGGATCTTTGCCTTCAACACTGAGAACAATAGGCTGGAG 1140
consensus_1739#1 AAGGCTGATGATCCAGACGGTTGGATCTTTGCCATCAACACTGAGAACAATAGGCTGGAG 273
********************************* **************************
consensus_1739#0 GAAATATCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGAC 1200
consensus_1739#1 GAAATACCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGAC 333
****** *****************************************************
consensus_1739#0 TTGTCCAAGCACCTGATGAACAAGGCTCTAGACGT---CTTGGCGTCGAGGAGGAGCGGC 1257
consensus_1739#1 TTGTCCAAGCACCTGATGAACAAGGTTCTAGGGTCTCACTTGGCCAATGATATGGATAAA 393
************************* ***** ****** * *
consensus_1739#0 GGCGGCAACGGTTCAGGGACGCGGAGAACTGGCGTCGAGGAGG-AGCGGCGGTGGTGGT- 1315
consensus_1739#1 TGCACAAACAGAGAAAAGATTCAGTTGTTAGGTACCAATCTTGTGGCCGCATTGGATGTG 453
** *** * * ** * * ** * * * ** ** *** **
consensus_1739#0 -TCGGGGATGATGAGGAGTGACGAGGCGGATCCGGCACGGCAT--CGGCAGCGTGCGCG- 1371
consensus_1739#1 CTCCGGAACATAGGTAATTGATAC--TGAATTATGCACAACACAATGCAGGTGTACATGC 511
** ** * * * *** * ** **** ** * * ** * *
consensus_1739#0 GTGGCGACGGGCGACTGCGGGTGCAGCGTTGGCGGGCGGGAGGCGCGGCGGCTCCACCTG 1431
consensus_1739#1 ATGAATGTTGATATTTACATGCGCTGAATCTATATGTCCAAAATGTCTTGTGTAATCATT 571
** * * * * ** * * * * * * * * *
consensus_1739#0 AACCGCCGAGCTGCGGCGGGCGCAACGTCAGCGGTTTCGGCACGGCATGGTTGCGGGCGT 1491
consensus_1739#1 AAGTGT---GCTGAATCTAATATAACTGTCATTTCTTTATTAAAAAAAA----------- 617
** * **** * *** ** * *
consensus_1739#0 GGCAACGACGGGCTGATGCGGGCTGGAGGCGCGGCAGCTCTACCTCCATCGCTAATCAGA 1551
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 GGCGGGCACGACGTCGGCGGATCCGGCACGGCACGGCTGCCAGCGCGGCGGCAACTGGTG 1611
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 ACTACGTGTAGGGGGTGAGGAGGCGGCGCATCTGGCTGCCGCTCCGCGCCCCACGCGCGT 1671
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 GGATCTGGCGTGGATATTGCACGGGTGACGGTGGGTGCGGCTGTGACGGGCAACTGCGGG 1731
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 CAGGAGGCAAGGCGGCGGCGAATCTGGCCGCCGTTCCGCCCGTACGCGCACGGCGCGACC 1791
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 TCTGCGGCGGCAAGCTCGGACTCGGATGGATATGGAGGAACAGCGGCGGCCACCCCCACG 1851
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 ACACGCCGCAATCGATGTCCGGAGCAAGCGCTAACAAAAAATTAACATATGATATAGACT 1911
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 GTGAGGATGTATTTGTTGAGTCAAAATTTTGTTGTCATACCAAGTTAATTTTTTAATTAG 1971
consensus_1739#1 ------------------------------------------------------------
consensus_1739#0 TAAGGATACCAAGCATATGATGTATATGAAAAAGGGTTTCTAATAAAAACATAGCCGC 2029
consensus_1739#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||