cluster # 1743

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1743 cluster # 1743 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1743#0 length = 932 sequences # 1

consensus_1743#1 length = 375 sequences # 1

consensusID : consensus_1743#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 932
fasta sequence

                              [TGTCCGCCTCGTTGCCGGCGGCGACGCCGGCGGGGAGGCACGCCGCCGCCGTGTACGTCGCGGCGGTGCCCCTGCGAGGGCCGAAGGGCCCGGCCCAGGCCCTGATGTCGGCGGGCTACTCGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAGCCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCGCCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCCCGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCGCGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGTGGCCGACCGACCTGGTCGTCGGGCGGCACGACTGCCGAGACTTCACCAACGGTTGGTCTGCCACCTCGTGATGGAGTTGATGCGTCTCGATCGCTTCTTAAAAAAAAAAGAAAAGAAAAAGAAAAATCTCATTTAGTTATCTGAAAATCGTCGATGACTCAATCGCTTCTAAAATCTCTTCTCTATTTTTTTTTGGTTCTGATTATTGCAAGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGGACGCCCTCAGATCGTCAGCTGCCAATGGTGATTGGTGAGAGTGATCAATCAGTCTAGAGCTGTGAAATGTGAACTGCTCGGATGGAGATTGAAGCAAAATTGGTGATACTTATCGGTATAATCGGGTGAAGTTTTTTTACTGAAGCGTGTAGGTTCAGTTTGTTACTACTAGTTTCTTTTCCATGCCCGACAACAATTTTACCATGTGTAATCATTTACTGGCAAAGTGGAGAGAAAAATGATGACACCCACAGAAGTATGTGTAGAGTGGTGACCATGTAGAAC]

[+] EMBL AK066774             [TGTCCGCCTCGTTGCCGGCGGCGACGCCGGCGGGGAGGCACGCCGCCGCCGTGTACGTCGCGGCGGTGCCCCTGCGAGGGCCGAAGGGCCCGGCCCAGGCCCTGATGTCGGCGGGCTACTCGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAGCCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCGCCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCCCGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCGCGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGTGGCCGACCGACCTGGTCGTCGGGCGGCACGACTGCCGAGACTTCACCAACGGTTGGTCTGCCACCTCGTGATGGAGTTGATGCGTCTCGATCGCTTCTTAAAAAAAAAAGAAAAGAAAAAGAAAAATCTCATTTAGTTATCTGAAAATCGTCGATGACTCAATCGCTTCTAAAATCTCTTCTCTATTTTTTTTTGGTTCTGATTATTGCAAGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGGACGCCCTCAGATCGTCAGCTGCCAATGGTGATTGGTGAGAGTGATCAATCAGTCTAGAGCTGTGAAATGTGAACTGCTCGGATGGAGATTGAAGCAAAATTGGTGATACTTATCGGTATAATCGGGTGAAGTTTTTTTACTGAAGCGTGTAGGTTCAGTTTGTTACTACTAGTTTCTTTTCCATGCCCGACAACAATTTTACCATGTGTAATCATTTACTGGCAAAGTGGAGAGAAAAATGATGACACCCACAGAAGTATGTGTAGAGTGGTGACCATGTAGAAC]




>consensus_1743#0
TGTCCGCCTCGTTGCCGGCGGCGACGCCGGCGGGGAGGCACGCCGCCGCCGTGTACGTCG
CGGCGGTGCCCCTGCGAGGGCCGAAGGGCCCGGCCCAGGCCCTGATGTCGGCGGGCTACT
CGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAG
CCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCG
CCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCC
CGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCG
CGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGTGGCCGACCGACCTGGTCGTCGGGC
GGCACGACTGCCGAGACTTCACCAACGGTTGGTCTGCCACCTCGTGATGGAGTTGATGCG
TCTCGATCGCTTCTTAAAAAAAAAAGAAAAGAAAAAGAAAAATCTCATTTAGTTATCTGA
AAATCGTCGATGACTCAATCGCTTCTAAAATCTCTTCTCTATTTTTTTTTGGTTCTGATT
ATTGCAAGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGGACGCCCTCAGATC
GTCAGCTGCCAATGGTGATTGGTGAGAGTGATCAATCAGTCTAGAGCTGTGAAATGTGAA
CTGCTCGGATGGAGATTGAAGCAAAATTGGTGATACTTATCGGTATAATCGGGTGAAGTT
TTTTTACTGAAGCGTGTAGGTTCAGTTTGTTACTACTAGTTTCTTTTCCATGCCCGACAA
CAATTTTACCATGTGTAATCATTTACTGGCAAAGTGGAGAGAAAAATGATGACACCCACA
GAAGTATGTGTAGAGTGGTGACCATGTAGAAC

consensusID : consensus_1743#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [CGGGCTACTCGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAGCCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCGCCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCCCGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCGCGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGGGGCCGACCGACCTGGTCGTCGGGCGGCACGACTGCCGAGACTTCACCAACGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGG]

[+] EMBL CF324716             [CGGGCTACTCGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAGCCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCGCCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCCCGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCGCGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGGGGCCGACCGACCTGGTCGTCGGGCGGCACGACTGCCGAGACTTCACCAACGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGG]




>consensus_1743#1
CGGGCTACTCGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACC
CGGCCCGAGCCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCG
CCGCCTTCGCCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGC
GGAGGGTCCCGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCG
GCGCCGCCGCGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGGGGCCGACCGACCTGG
TCGTCGGGCGGCACGACTGCCGAGACTTCACCAACGGGCTCGTGGAAGAACTGACAGGTG
AGAAACGTGTCTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1743#0      TGTCCGCCTCGTTGCCGGCGGCGACGCCGGCGGGGAGGCACGCCGCCGCCGTGTACGTCG 60
consensus_1743#1      ------------------------------------------------------------
                                                                                  

consensus_1743#0      CGGCGGTGCCCCTGCGAGGGCCGAAGGGCCCGGCCCAGGCCCTGATGTCGGCGGGCTACT 120
consensus_1743#1      ---------------------------------------------------CGGGCTACT 9
                                                                         *********

consensus_1743#0      CGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAG 180
consensus_1743#1      CGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAG 69
                      ************************************************************

consensus_1743#0      CCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCG 240
consensus_1743#1      CCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCG 129
                      ************************************************************

consensus_1743#0      CCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCC 300
consensus_1743#1      CCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCC 189
                      ************************************************************

consensus_1743#0      CGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCG 360
consensus_1743#1      CGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCG 249
                      ************************************************************

consensus_1743#0      CGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGTGGCCGACCGACCTGGTCGTCGGGC 420
consensus_1743#1      CGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGGGGCCGACCGACCTGGTCGTCGGGC 309
                      *********************************** ************************

consensus_1743#0      GGCACGACTGCCGAGACTTCACCAACGGTTGGTCTGCCACCTCGTGATGGAGTTGATGCG 480
consensus_1743#1      GGCACGACTGCCGAGACTTCACCAACGGG-----------CTCGTGGAAGAACTGACAGG 358
                      ****************************            ******   **  ***   *

consensus_1743#0      TCTCGATCGCTTCTTAAAAAAAAAAGAAAAGAAAAAGAAAAATCTCATTTAGTTATCTGA 540
consensus_1743#1      TGAGAAACGTGTCTTGG------------------------------------------- 375
                      *    * **  ****                                             

consensus_1743#0      AAATCGTCGATGACTCAATCGCTTCTAAAATCTCTTCTCTATTTTTTTTTGGTTCTGATT 600
consensus_1743#1      ------------------------------------------------------------
                                                                                  

consensus_1743#0      ATTGCAAGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGGACGCCCTCAGATC 660
consensus_1743#1      ------------------------------------------------------------
                                                                                  

consensus_1743#0      GTCAGCTGCCAATGGTGATTGGTGAGAGTGATCAATCAGTCTAGAGCTGTGAAATGTGAA 720
consensus_1743#1      ------------------------------------------------------------
                                                                                  

consensus_1743#0      CTGCTCGGATGGAGATTGAAGCAAAATTGGTGATACTTATCGGTATAATCGGGTGAAGTT 780
consensus_1743#1      ------------------------------------------------------------
                                                                                  

consensus_1743#0      TTTTTACTGAAGCGTGTAGGTTCAGTTTGTTACTACTAGTTTCTTTTCCATGCCCGACAA 840
consensus_1743#1      ------------------------------------------------------------
                                                                                  

consensus_1743#0      CAATTTTACCATGTGTAATCATTTACTGGCAAAGTGGAGAGAAAAATGATGACACCCACA 900
consensus_1743#1      ------------------------------------------------------------
                                                                                  

consensus_1743#0      GAAGTATGTGTAGAGTGGTGACCATGTAGAAC 932
consensus_1743#1      --------------------------------