These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 932 fasta sequence [TGTCCGCCTCGTTGCCGGCGGCGACGCCGGCGGGGAGGCACGCCGCCGCCGTGTACGTCGCGGCGGTGCCCCTGCGAGGGCCGAAGGGCCCGGCCCAGGCCCTGATGTCGGCGGGCTACTCGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAGCCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCGCCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCCCGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCGCGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGTGGCCGACCGACCTGGTCGTCGGGCGGCACGACTGCCGAGACTTCACCAACGGTTGGTCTGCCACCTCGTGATGGAGTTGATGCGTCTCGATCGCTTCTTAAAAAAAAAAGAAAAGAAAAAGAAAAATCTCATTTAGTTATCTGAAAATCGTCGATGACTCAATCGCTTCTAAAATCTCTTCTCTATTTTTTTTTGGTTCTGATTATTGCAAGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGGACGCCCTCAGATCGTCAGCTGCCAATGGTGATTGGTGAGAGTGATCAATCAGTCTAGAGCTGTGAAATGTGAACTGCTCGGATGGAGATTGAAGCAAAATTGGTGATACTTATCGGTATAATCGGGTGAAGTTTTTTTACTGAAGCGTGTAGGTTCAGTTTGTTACTACTAGTTTCTTTTCCATGCCCGACAACAATTTTACCATGTGTAATCATTTACTGGCAAAGTGGAGAGAAAAATGATGACACCCACAGAAGTATGTGTAGAGTGGTGACCATGTAGAAC] [+] EMBL AK066774 [TGTCCGCCTCGTTGCCGGCGGCGACGCCGGCGGGGAGGCACGCCGCCGCCGTGTACGTCGCGGCGGTGCCCCTGCGAGGGCCGAAGGGCCCGGCCCAGGCCCTGATGTCGGCGGGCTACTCGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAGCCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCGCCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCCCGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCGCGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGTGGCCGACCGACCTGGTCGTCGGGCGGCACGACTGCCGAGACTTCACCAACGGTTGGTCTGCCACCTCGTGATGGAGTTGATGCGTCTCGATCGCTTCTTAAAAAAAAAAGAAAAGAAAAAGAAAAATCTCATTTAGTTATCTGAAAATCGTCGATGACTCAATCGCTTCTAAAATCTCTTCTCTATTTTTTTTTGGTTCTGATTATTGCAAGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGGACGCCCTCAGATCGTCAGCTGCCAATGGTGATTGGTGAGAGTGATCAATCAGTCTAGAGCTGTGAAATGTGAACTGCTCGGATGGAGATTGAAGCAAAATTGGTGATACTTATCGGTATAATCGGGTGAAGTTTTTTTACTGAAGCGTGTAGGTTCAGTTTGTTACTACTAGTTTCTTTTCCATGCCCGACAACAATTTTACCATGTGTAATCATTTACTGGCAAAGTGGAGAGAAAAATGATGACACCCACAGAAGTATGTGTAGAGTGGTGACCATGTAGAAC] consensusID : consensus_1743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [CGGGCTACTCGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAGCCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCGCCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCCCGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCGCGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGGGGCCGACCGACCTGGTCGTCGGGCGGCACGACTGCCGAGACTTCACCAACGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGG] [+] EMBL CF324716 [CGGGCTACTCGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAGCCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCGCCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCCCGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCGCGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGGGGCCGACCGACCTGGTCGTCGGGCGGCACGACTGCCGAGACTTCACCAACGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1743#0 TGTCCGCCTCGTTGCCGGCGGCGACGCCGGCGGGGAGGCACGCCGCCGCCGTGTACGTCG 60 consensus_1743#1 ------------------------------------------------------------ consensus_1743#0 CGGCGGTGCCCCTGCGAGGGCCGAAGGGCCCGGCCCAGGCCCTGATGTCGGCGGGCTACT 120 consensus_1743#1 ---------------------------------------------------CGGGCTACT 9 ********* consensus_1743#0 CGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAG 180 consensus_1743#1 CGCTGGGCCTCTGGGACCTGCAGCACTTCATGGTGCTCCTCCGGCCCGACCCGGCCCGAG 69 ************************************************************ consensus_1743#0 CCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCG 240 consensus_1743#1 CCCAGGCGCTGGTGTTCGATTTCCAGCCACGGGACCCGGAGGACGCGCTCGCCGCCTTCG 129 ************************************************************ consensus_1743#0 CCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCC 300 consensus_1743#1 CCGTGCTCTCGCGGAGCGAAATCCCCGGAGTGGTCCGGAGGAGGACGCTGCGGAGGGTCC 189 ************************************************************ consensus_1743#0 CGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCG 360 consensus_1743#1 CGGACACGAGGTGCTGGCTCGTCGGCCACCACCGCAGCGGCGGCGGCGCCGGCGCCGCCG 249 ************************************************************ consensus_1743#0 CGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGTGGCCGACCGACCTGGTCGTCGGGC 420 consensus_1743#1 CGGCGGTGCTCGCCGCCGACGCGTTCACCGCGCGGGGGCCGACCGACCTGGTCGTCGGGC 309 *********************************** ************************ consensus_1743#0 GGCACGACTGCCGAGACTTCACCAACGGTTGGTCTGCCACCTCGTGATGGAGTTGATGCG 480 consensus_1743#1 GGCACGACTGCCGAGACTTCACCAACGGG-----------CTCGTGGAAGAACTGACAGG 358 **************************** ****** ** *** * consensus_1743#0 TCTCGATCGCTTCTTAAAAAAAAAAGAAAAGAAAAAGAAAAATCTCATTTAGTTATCTGA 540 consensus_1743#1 TGAGAAACGTGTCTTGG------------------------------------------- 375 * * ** **** consensus_1743#0 AAATCGTCGATGACTCAATCGCTTCTAAAATCTCTTCTCTATTTTTTTTTGGTTCTGATT 600 consensus_1743#1 ------------------------------------------------------------ consensus_1743#0 ATTGCAAGGGCTCGTGGAAGAACTGACAGGTGAGAAACGTGTCTTGGACGCCCTCAGATC 660 consensus_1743#1 ------------------------------------------------------------ consensus_1743#0 GTCAGCTGCCAATGGTGATTGGTGAGAGTGATCAATCAGTCTAGAGCTGTGAAATGTGAA 720 consensus_1743#1 ------------------------------------------------------------ consensus_1743#0 CTGCTCGGATGGAGATTGAAGCAAAATTGGTGATACTTATCGGTATAATCGGGTGAAGTT 780 consensus_1743#1 ------------------------------------------------------------ consensus_1743#0 TTTTTACTGAAGCGTGTAGGTTCAGTTTGTTACTACTAGTTTCTTTTCCATGCCCGACAA 840 consensus_1743#1 ------------------------------------------------------------ consensus_1743#0 CAATTTTACCATGTGTAATCATTTACTGGCAAAGTGGAGAGAAAAATGATGACACCCACA 900 consensus_1743#1 ------------------------------------------------------------ consensus_1743#0 GAAGTATGTGTAGAGTGGTGACCATGTAGAAC 932 consensus_1743#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||