cluster # 1748

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Oryza sativa
cluster # 1748 cluster # 1748 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1748#0 length = 1492 sequences # 1

consensus_1748#1 length = 868 sequences # 1

consensusID : consensus_1748#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1492
fasta sequence

                              [CGAACCATTCCCGCAGCAAAAAGACCCAAGGCCAGGTGAGCTCTCTCGCCCGCCCGCTCGCACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTCGTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGGCGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCCGGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGCGGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGGCCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGTCCTCCGGAAGCCGCCGTCCACGTGCCCCGCCGACGGCGGGGGAGGCGGGATCGTCGTCCAGAAGCCCGTCATCCTGCCGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCGTGCCGGTGATGGCCCCACCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCGGCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCCAGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTGCTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGACCGGCGGCGCGGGCGCGTCGCCGTGTGGCGAACTCACCTGGAGAGCATCACCGAGGATGACTTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGGTTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTATTTTTTATTTTTACTTTTGCCATTCTTTCCCCGGCCCGTCTCCTTTATTAGAGCATCATCCTCTTCCCTGCTCCTTTACAGGGTGAAATGATGTCTTTGTGAAGAAAAAGATACAATTTTTGCTATGCCCCTCTATCTTTACAGCACCTATGATCCAGTTATGGGCTCAACTAGTTACTAGTTGCTACAGCAGTTTGCATTGTTCTGTACATACATATTAAAATTGTGTAAACAATATTTCTCTAGCATCCTTCTAGCAAAGGTGCAATTATATATTTTTTTTCTGAAAGGTATGAGGTGCAAATCACACCAGCAATAGATGGATCTTGATCTTCCCCTCAATTTTCTGCTACTATGCTGCTAGCCTGCTACACATTCCACGCTCACACCAGCAAGCTACTCCTAGCTAGGAGCCCCCATCTATTTGCCCTTTCACTATTTTTCTTCTCCAAAAGCGCTATACCACTAAACCAACTGTCACTTTGATATTGGTGCGAACTTGTAAATTCCTCTGGAAATTTTAGTATTCCGT]

[+] EMBL AK107089             [CGAACCATTCCCGCAGCAAAAAGACCCAAGGCCAGGTGAGCTCTCTCGCCCGCCCGCTCGCACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTCGTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGGCGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCCGGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGCGGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGGCCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGTCCTCCGGAAGCCGCCGTCCACGTGCCCCGCCGACGGCGGGGGAGGCGGGATCGTCGTCCAGAAGCCCGTCATCCTGCCGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCGTGCCGGTGATGGCCCCACCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCGGCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCCAGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTGCTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGACCGGCGGCGCGGGCGCGTCGCCGTGTGGCGAACTCACCTGGAGAGCATCACCGAGGATGACTTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGGTTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTATTTTTTATTTTTACTTTTGCCATTCTTTCCCCGGCCCGTCTCCTTTATTAGAGCATCATCCTCTTCCCTGCTCCTTTACAGGGTGAAATGATGTCTTTGTGAAGAAAAAGATACAATTTTTGCTATGCCCCTCTATCTTTACAGCACCTATGATCCAGTTATGGGCTCAACTAGTTACTAGTTGCTACAGCAGTTTGCATTGTTCTGTACATACATATTAAAATTGTGTAAACAATATTTCTCTAGCATCCTTCTAGCAAAGGTGCAATTATATATTTTTTTTCTGAAAGGTATGAGGTGCAAATCACACCAGCAATAGATGGATCTTGATCTTCCCCTCAATTTTCTGCTACTATGCTGCTAGCCTGCTACACATTCCACGCTCACACCAGCAAGCTACTCCTAGCTAGGAGCCCCCATCTATTTGCCCTTTCACTATTTTTCTTCTCCAAAAGCGCTATACCACTAAACCAACTGTCACTTTGATATTGGTGCGAACTTGTAAATTCCTCTGGAAATTTTAGTATTCCGT]




>consensus_1748#0
CGAACCATTCCCGCAGCAAAAAGACCCAAGGCCAGGTGAGCTCTCTCGCCCGCCCGCTCG
CACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTC
GTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGG
CGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCC
GGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGC
GGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGG
CCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGTCCTCCGGAAGCCGCCG
TCCACGTGCCCCGCCGACGGCGGGGGAGGCGGGATCGTCGTCCAGAAGCCCGTCATCCTG
CCGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCGTGCCGGTGATGGCCCCA
CCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCG
GCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCC
AGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTG
CTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGAC
CGGCGGCGCGGGCGCGTCGCCGTGTGGCGAACTCACCTGGAGAGCATCACCGAGGATGAC
TTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGG
TTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTA
TTTTTTATTTTTACTTTTGCCATTCTTTCCCCGGCCCGTCTCCTTTATTAGAGCATCATC
CTCTTCCCTGCTCCTTTACAGGGTGAAATGATGTCTTTGTGAAGAAAAAGATACAATTTT
TGCTATGCCCCTCTATCTTTACAGCACCTATGATCCAGTTATGGGCTCAACTAGTTACTA
GTTGCTACAGCAGTTTGCATTGTTCTGTACATACATATTAAAATTGTGTAAACAATATTT
CTCTAGCATCCTTCTAGCAAAGGTGCAATTATATATTTTTTTTCTGAAAGGTATGAGGTG
CAAATCACACCAGCAATAGATGGATCTTGATCTTCCCCTCAATTTTCTGCTACTATGCTG
CTAGCCTGCTACACATTCCACGCTCACACCAGCAAGCTACTCCTAGCTAGGAGCCCCCAT
CTATTTGCCCTTTCACTATTTTTCTTCTCCAAAAGCGCTATACCACTAAACCAACTGTCA
CTTTGATATTGGTGCGAACTTGTAAATTCCTCTGGAAATTTTAGTATTCCGT

consensusID : consensus_1748#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 868
fasta sequence

                              [ACCCAAGGCCAGGTGAGCTCTCTCGCTCGCCCGCTCGCACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTCGTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGGCGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCCGGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGCGGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGGCCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCATGCCGGTGATGGCCCCACCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCGGCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCCAGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTGCTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGACCGGCGGCGCGGGCGCGTCGCCGTGTGGCGACCTCACCTGGAGAGCATCACCGAGGATGACTTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGGTTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTATTTTTTATTTT]

[+] EMBL AK062409             [ACCCAAGGCCAGGTGAGCTCTCTCGCTCGCCCGCTCGCACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTCGTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGGCGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCCGGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGCGGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGGCCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCATGCCGGTGATGGCCCCACCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCGGCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCCAGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTGCTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGACCGGCGGCGCGGGCGCGTCGCCGTGTGGCGACCTCACCTGGAGAGCATCACCGAGGATGACTTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGGTTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTATTTTTTATTTT]




>consensus_1748#1
ACCCAAGGCCAGGTGAGCTCTCTCGCTCGCCCGCTCGCACGTGTAGCGGACAAACTCATC
GCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTCGTGCGCGCTCTGCAAGCCTGCAA
CCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGGCGAGAGAGGGGGAGAGTGCCGGT
GGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCCGGCGAGCCGACGTCGGGCATGGA
CACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGCGGGGCGCTGGACGTGGTGCGCAT
CGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGGCCGGTGCTCGCCGGCGAGATCAT
GAAGGCGTACCCCAAGCACGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCA
TGCCGGTGATGGCCCCACCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAG
CGCAGGCGCCCGCGGCGGCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCG
CCGGCGGCCGAGCTGCCAGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGG
GCGAGAAGGAGCGGCTGCTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGG
CGTCGACGGCGAGAGACCGGCGGCGCGGGCGCGTCGCCGTGTGGCGACCTCACCTGGAGA
GCATCACCGAGGATGACTTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTC
TATTTTTTCCCATTGGGTTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTT
TGCCCTCCGGGTTTTTATTTTTTATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1748#0      CGAACCATTCCCGCAGCAAAAAGACCCAAGGCCAGGTGAGCTCTCTCGCCCGCCCGCTCG 60
consensus_1748#1      -----------------------ACCCAAGGCCAGGTGAGCTCTCTCGCTCGCCCGCTCG 37
                                             ************************** **********

consensus_1748#0      CACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTC 120
consensus_1748#1      CACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTC 97
                      ************************************************************

consensus_1748#0      GTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGG 180
consensus_1748#1      GTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGG 157
                      ************************************************************

consensus_1748#0      CGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCC 240
consensus_1748#1      CGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCC 217
                      ************************************************************

consensus_1748#0      GGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGC 300
consensus_1748#1      GGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGC 277
                      ************************************************************

consensus_1748#0      GGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGG 360
consensus_1748#1      GGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGG 337
                      ************************************************************

consensus_1748#0      CCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGTCCTCCGGAAGCCGCCG 420
consensus_1748#1      CCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACG----------------- 380
                      *******************************************                 

consensus_1748#0      TCCACGTGCCCCGCCGACGGCGGGGGAGGCGGGATCGTCGTCCAGAAGCCCGTCATCCTG 480
consensus_1748#1      ------------------------------------------------------------
                                                                                  

consensus_1748#0      CCGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCGTGCCGGTGATGGCCCCA 540
consensus_1748#1      ---CCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCATGCCGGTGATGGCCCCA 437
                         *************************************** *****************

consensus_1748#0      CCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCG 600
consensus_1748#1      CCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCG 497
                      ************************************************************

consensus_1748#0      GCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCC 660
consensus_1748#1      GCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCC 557
                      ************************************************************

consensus_1748#0      AGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTG 720
consensus_1748#1      AGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTG 617
                      ************************************************************

consensus_1748#0      CTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGAC 780
consensus_1748#1      CTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGAC 677
                      ************************************************************

consensus_1748#0      CGGCGGCGCGGGCGCGTCGCCGTGTGGCGAACTCACCTGGAGAGCATCACCGAGGATGAC 840
consensus_1748#1      CGGCGGCGCGGGCGCGTCGCCGTGTGGCGACCTCACCTGGAGAGCATCACCGAGGATGAC 737
                      ****************************** *****************************

consensus_1748#0      TTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGG 900
consensus_1748#1      TTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGG 797
                      ************************************************************

consensus_1748#0      TTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTA 960
consensus_1748#1      TTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTA 857
                      ************************************************************

consensus_1748#0      TTTTTTATTTTTACTTTTGCCATTCTTTCCCCGGCCCGTCTCCTTTATTAGAGCATCATC 1020
consensus_1748#1      TTTTTTATTTT------------------------------------------------- 868
                      ***********                                                 

consensus_1748#0      CTCTTCCCTGCTCCTTTACAGGGTGAAATGATGTCTTTGTGAAGAAAAAGATACAATTTT 1080
consensus_1748#1      ------------------------------------------------------------
                                                                                  

consensus_1748#0      TGCTATGCCCCTCTATCTTTACAGCACCTATGATCCAGTTATGGGCTCAACTAGTTACTA 1140
consensus_1748#1      ------------------------------------------------------------
                                                                                  

consensus_1748#0      GTTGCTACAGCAGTTTGCATTGTTCTGTACATACATATTAAAATTGTGTAAACAATATTT 1200
consensus_1748#1      ------------------------------------------------------------
                                                                                  

consensus_1748#0      CTCTAGCATCCTTCTAGCAAAGGTGCAATTATATATTTTTTTTCTGAAAGGTATGAGGTG 1260
consensus_1748#1      ------------------------------------------------------------
                                                                                  

consensus_1748#0      CAAATCACACCAGCAATAGATGGATCTTGATCTTCCCCTCAATTTTCTGCTACTATGCTG 1320
consensus_1748#1      ------------------------------------------------------------
                                                                                  

consensus_1748#0      CTAGCCTGCTACACATTCCACGCTCACACCAGCAAGCTACTCCTAGCTAGGAGCCCCCAT 1380
consensus_1748#1      ------------------------------------------------------------
                                                                                  

consensus_1748#0      CTATTTGCCCTTTCACTATTTTTCTTCTCCAAAAGCGCTATACCACTAAACCAACTGTCA 1440
consensus_1748#1      ------------------------------------------------------------
                                                                                  

consensus_1748#0      CTTTGATATTGGTGCGAACTTGTAAATTCCTCTGGAAATTTTAGTATTCCGT 1492
consensus_1748#1      ----------------------------------------------------