These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1492 fasta sequence [CGAACCATTCCCGCAGCAAAAAGACCCAAGGCCAGGTGAGCTCTCTCGCCCGCCCGCTCGCACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTCGTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGGCGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCCGGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGCGGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGGCCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGTCCTCCGGAAGCCGCCGTCCACGTGCCCCGCCGACGGCGGGGGAGGCGGGATCGTCGTCCAGAAGCCCGTCATCCTGCCGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCGTGCCGGTGATGGCCCCACCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCGGCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCCAGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTGCTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGACCGGCGGCGCGGGCGCGTCGCCGTGTGGCGAACTCACCTGGAGAGCATCACCGAGGATGACTTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGGTTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTATTTTTTATTTTTACTTTTGCCATTCTTTCCCCGGCCCGTCTCCTTTATTAGAGCATCATCCTCTTCCCTGCTCCTTTACAGGGTGAAATGATGTCTTTGTGAAGAAAAAGATACAATTTTTGCTATGCCCCTCTATCTTTACAGCACCTATGATCCAGTTATGGGCTCAACTAGTTACTAGTTGCTACAGCAGTTTGCATTGTTCTGTACATACATATTAAAATTGTGTAAACAATATTTCTCTAGCATCCTTCTAGCAAAGGTGCAATTATATATTTTTTTTCTGAAAGGTATGAGGTGCAAATCACACCAGCAATAGATGGATCTTGATCTTCCCCTCAATTTTCTGCTACTATGCTGCTAGCCTGCTACACATTCCACGCTCACACCAGCAAGCTACTCCTAGCTAGGAGCCCCCATCTATTTGCCCTTTCACTATTTTTCTTCTCCAAAAGCGCTATACCACTAAACCAACTGTCACTTTGATATTGGTGCGAACTTGTAAATTCCTCTGGAAATTTTAGTATTCCGT] [+] EMBL AK107089 [CGAACCATTCCCGCAGCAAAAAGACCCAAGGCCAGGTGAGCTCTCTCGCCCGCCCGCTCGCACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTCGTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGGCGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCCGGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGCGGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGGCCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGTCCTCCGGAAGCCGCCGTCCACGTGCCCCGCCGACGGCGGGGGAGGCGGGATCGTCGTCCAGAAGCCCGTCATCCTGCCGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCGTGCCGGTGATGGCCCCACCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCGGCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCCAGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTGCTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGACCGGCGGCGCGGGCGCGTCGCCGTGTGGCGAACTCACCTGGAGAGCATCACCGAGGATGACTTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGGTTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTATTTTTTATTTTTACTTTTGCCATTCTTTCCCCGGCCCGTCTCCTTTATTAGAGCATCATCCTCTTCCCTGCTCCTTTACAGGGTGAAATGATGTCTTTGTGAAGAAAAAGATACAATTTTTGCTATGCCCCTCTATCTTTACAGCACCTATGATCCAGTTATGGGCTCAACTAGTTACTAGTTGCTACAGCAGTTTGCATTGTTCTGTACATACATATTAAAATTGTGTAAACAATATTTCTCTAGCATCCTTCTAGCAAAGGTGCAATTATATATTTTTTTTCTGAAAGGTATGAGGTGCAAATCACACCAGCAATAGATGGATCTTGATCTTCCCCTCAATTTTCTGCTACTATGCTGCTAGCCTGCTACACATTCCACGCTCACACCAGCAAGCTACTCCTAGCTAGGAGCCCCCATCTATTTGCCCTTTCACTATTTTTCTTCTCCAAAAGCGCTATACCACTAAACCAACTGTCACTTTGATATTGGTGCGAACTTGTAAATTCCTCTGGAAATTTTAGTATTCCGT] consensusID : consensus_1748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 868 fasta sequence [ACCCAAGGCCAGGTGAGCTCTCTCGCTCGCCCGCTCGCACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTCGTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGGCGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCCGGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGCGGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGGCCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCATGCCGGTGATGGCCCCACCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCGGCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCCAGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTGCTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGACCGGCGGCGCGGGCGCGTCGCCGTGTGGCGACCTCACCTGGAGAGCATCACCGAGGATGACTTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGGTTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTATTTTTTATTTT] [+] EMBL AK062409 [ACCCAAGGCCAGGTGAGCTCTCTCGCTCGCCCGCTCGCACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTCGTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGGCGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCCGGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGCGGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGGCCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCATGCCGGTGATGGCCCCACCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCGGCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCCAGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTGCTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGACCGGCGGCGCGGGCGCGTCGCCGTGTGGCGACCTCACCTGGAGAGCATCACCGAGGATGACTTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGGTTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTATTTTTTATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1748#0 CGAACCATTCCCGCAGCAAAAAGACCCAAGGCCAGGTGAGCTCTCTCGCCCGCCCGCTCG 60 consensus_1748#1 -----------------------ACCCAAGGCCAGGTGAGCTCTCTCGCTCGCCCGCTCG 37 ************************** ********** consensus_1748#0 CACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTC 120 consensus_1748#1 CACGTGTAGCGGACAAACTCATCGCTCGGTTGAGTTCTTCTTCTTCTCCTCCTCCTCCTC 97 ************************************************************ consensus_1748#0 GTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGG 180 consensus_1748#1 GTGCGCGCTCTGCAAGCCTGCAACCCCATGAGCTAGCTAGCTCGGCGAAGCGGCCGGCGG 157 ************************************************************ consensus_1748#0 CGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCC 240 consensus_1748#1 CGAGAGAGGGGGAGAGTGCCGGTGGGGACGGAGGAGATCGGTCCGTACGTGCTGCCGGCC 217 ************************************************************ consensus_1748#0 GGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGC 300 consensus_1748#1 GGCGAGCCGACGTCGGGCATGGACACCATACGGTGCTGCATCGCGTGCATCCTGCCGTGC 277 ************************************************************ consensus_1748#0 GGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGG 360 consensus_1748#1 GGGGCGCTGGACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGG 337 ************************************************************ consensus_1748#0 CCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACGTCCTCCGGAAGCCGCCG 420 consensus_1748#1 CCGGTGCTCGCCGGCGAGATCATGAAGGCGTACCCCAAGCACG----------------- 380 ******************************************* consensus_1748#0 TCCACGTGCCCCGCCGACGGCGGGGGAGGCGGGATCGTCGTCCAGAAGCCCGTCATCCTG 480 consensus_1748#1 ------------------------------------------------------------ consensus_1748#0 CCGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCGTGCCGGTGATGGCCCCA 540 consensus_1748#1 ---CCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCATGCCGGTGATGGCCCCA 437 *************************************** ***************** consensus_1748#0 CCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCG 600 consensus_1748#1 CCGGAGAAGGAGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCG 497 ************************************************************ consensus_1748#0 GCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCC 660 consensus_1748#1 GCGAGGAGGCGGCGGAGGAGGAAAGAAACCGCTGATGAGGCCGCCGGCGGCCGAGCTGCC 557 ************************************************************ consensus_1748#0 AGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTG 720 consensus_1748#1 AGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAAGGAGCGGCTG 617 ************************************************************ consensus_1748#0 CTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGAC 780 consensus_1748#1 CTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGAC 677 ************************************************************ consensus_1748#0 CGGCGGCGCGGGCGCGTCGCCGTGTGGCGAACTCACCTGGAGAGCATCACCGAGGATGAC 840 consensus_1748#1 CGGCGGCGCGGGCGCGTCGCCGTGTGGCGACCTCACCTGGAGAGCATCACCGAGGATGAC 737 ****************************** ***************************** consensus_1748#0 TTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGG 900 consensus_1748#1 TTGTAATCAAACGAGGTGTTCGTTTTTTTTTCTTCTTCTTCTCTATTTTTTCCCATTGGG 797 ************************************************************ consensus_1748#0 TTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTA 960 consensus_1748#1 TTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGTTTGCCCTCCGGGTTTTTA 857 ************************************************************ consensus_1748#0 TTTTTTATTTTTACTTTTGCCATTCTTTCCCCGGCCCGTCTCCTTTATTAGAGCATCATC 1020 consensus_1748#1 TTTTTTATTTT------------------------------------------------- 868 *********** consensus_1748#0 CTCTTCCCTGCTCCTTTACAGGGTGAAATGATGTCTTTGTGAAGAAAAAGATACAATTTT 1080 consensus_1748#1 ------------------------------------------------------------ consensus_1748#0 TGCTATGCCCCTCTATCTTTACAGCACCTATGATCCAGTTATGGGCTCAACTAGTTACTA 1140 consensus_1748#1 ------------------------------------------------------------ consensus_1748#0 GTTGCTACAGCAGTTTGCATTGTTCTGTACATACATATTAAAATTGTGTAAACAATATTT 1200 consensus_1748#1 ------------------------------------------------------------ consensus_1748#0 CTCTAGCATCCTTCTAGCAAAGGTGCAATTATATATTTTTTTTCTGAAAGGTATGAGGTG 1260 consensus_1748#1 ------------------------------------------------------------ consensus_1748#0 CAAATCACACCAGCAATAGATGGATCTTGATCTTCCCCTCAATTTTCTGCTACTATGCTG 1320 consensus_1748#1 ------------------------------------------------------------ consensus_1748#0 CTAGCCTGCTACACATTCCACGCTCACACCAGCAAGCTACTCCTAGCTAGGAGCCCCCAT 1380 consensus_1748#1 ------------------------------------------------------------ consensus_1748#0 CTATTTGCCCTTTCACTATTTTTCTTCTCCAAAAGCGCTATACCACTAAACCAACTGTCA 1440 consensus_1748#1 ------------------------------------------------------------ consensus_1748#0 CTTTGATATTGGTGCGAACTTGTAAATTCCTCTGGAAATTTTAGTATTCCGT 1492 consensus_1748#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||