These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [GCCNCCNTACTGCATNNNCNNCTCATATNCCGACTTCNCTCNTANNANCGAATTNGGTTCNCCGGTCCCCCCCNTCGANNTCCANCCTCNCCTCGTNCCGGNAANAAATNGTGNNNNCCCANANNNACCAGNNGANCCCGCGNGGANNANGTCNAGNGGGGGGATCCAGGAATTCNGGATTCGGCTTTCCTNCCCCTTGNTGGCCCGGCGCCNTNCNTGCATTGGAGTGACCTCTGGGAATGTTATATTTGGGCCACNTCTTCCAGANGTACTGNGTCANAGAAGCAGTCAGCNGCANNCAGNCAAGANGGAGTCAAAAGTAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAGCCAGTTTTGNTGATTCAACTTNTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGAAGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTTGTTAGAACAGTTTCAGGTAGCTGTATCTGTATGCCCTAGTTGTTGAAAGGAACATTGCAACATCCACAGATGAAAGGAACATTCCAAACCATCATTTTGGGCAAAAAAAAAA] [+] EMBL C97927 [GCCNCCNTACTGCATNNNCNNCTCATATNCCGACTTCNCTCNTANNANCGAATTNGGTTCNCCGGTCCCCCCCNTCGANNTCCANCCTCNCCTCGTNCCGGNAANAAATNGTGNNNNCCCANANNNACCAGNNGANCCCGCGNGGANNANGTCNAGNGGGGGGATCCAGGAATTCNGGATTCGGCTTTCCTNCCCCTTGNTGGCCCGGCGCCNTNCNTGCATTGGAGTGACCTCTGGGAATGTTATATTTGGGCCACNTCTTCCAGANGTACTGNGTCANAGAAGCAGTCAGCNGCANNCAGNCAAGANGGAGTCAAAAGTAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAGCCAGTTTTGNTGATTCAACTTNTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGAAGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTTGTTAGAACAGTTTCAGGTAGCTGTATCTGTATGCCCTAGTTGTTGAAAGGAACATTGCAACATCCACAGATGAAAGGAACATTCCAAACCATCATTTTGGGCAAAAAAAAAA] consensusID : consensus_175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [AGCGAGGGCCAAGAAACAGAAGAACCCGCGGGGAGAAGGCGAGAGGGGGGATCAGGAATTCAGGATGCGGCTCTCCTTCCCCCTGGTGGCCGGCGCCGTCGTGATTGGAGTGATCTCTGGGAATGTTATATTTGGGCCACCTCTTCAGAAGTACTGGGCAGAGAAGCAGCAGCAGCAGCAGCAAGAGGGAGCAAAAGAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAGCCAGTTTTGCTGATTCAACTTCTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGAAGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTT] [+] EMBL OS0136A [AGCGAGGGCCAAGAAACAGAAGAACCCGCGGGGAGAAGGCGAGAGGGGGGATCAGGAATTCAGGATGCGGCTCTCCTTCCCCCTGGTGGCCGGCGCCGTCGTGATTGGAGTGATCTCTGGGAATGTTATATTTGGGCCACCTCTTCAGAAGTACTGGGCAGAGAAGCAGCAGCAGCAGCAGCAAGAGGGAGCAAAAGAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAGCCAGTTTTGCTGATTCAACTTCTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGAAGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_175#0 GCCNCCNTACTGCATNNNCNNCTCATATNCCGACTTCNCTCNTANNANCGAATTNGGTTC 60 consensus_175#1 ------------------------------------------------------------ consensus_175#0 NCCGGTCCCCCCCNTCGANNTCCANCCTCNCCTCGTNCCGGNAANAAATNGTGNNNNCCC 120 consensus_175#1 -------------------------------------------------AGCGAGGGCCA 11 * * ** consensus_175#0 ANANNNACCAGNNGANCCCGCGNGGANNANGTCNAGNGGGGGGATCCAGGAATTCNGGAT 180 consensus_175#1 AGAAACA---GAAGAACCCGCGGGGAGAAGG-CGAGAGGGGGGATC-AGGAATTCAGGAT 66 * * * * ** ****** *** * * * ** ********* ******** **** consensus_175#0 TCGGCTTTCCTNCCCCTTGNTGGCCCGGCGCCNTNCNTGCATTGGAGTGACCTCTGGGAA 240 consensus_175#1 GCGGCTCTCCTTCCCCCTGGTGGCC-GGCGCCGTC-GTG-ATTGGAGTGATCTCTGGGAA 123 ***** **** **** ** ***** ****** * ** ********** ********* consensus_175#0 TGTTATATTTGGGCCACNTCTTCCAGANGTACTGNGTCANAGAAGCAGTCAGCNGCANNC 300 consensus_175#1 TGTTATATTTGGGCCACCTCTTC-AGAAGTACTGGG-CAGAGAAGCAG-CAGCAGCAGC- 179 ***************** ***** *** ****** * ** ******** **** *** consensus_175#0 AGNCAAGANGGAGTCAAAAGTAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAG 360 consensus_175#1 -AGCAAGAGGGAG-CAAAAG-AGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAG 236 ***** **** ****** *************************************** consensus_175#0 CCAGTTTTGNTGATTCAACTTNTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGA 420 consensus_175#1 CCAGTTTTGCTGATTCAACTTCTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGA 296 ********* *********** ************************************** consensus_175#0 AGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTTGTTAGAAC 480 consensus_175#1 AGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTT-------- 348 **************************************************** consensus_175#0 AGTTTCAGGTAGCTGTATCTGTATGCCCTAGTTGTTGAAAGGAACATTGCAACATCCACA 540 consensus_175#1 ------------------------------------------------------------ consensus_175#0 GATGAAAGGAACATTCCAAACCATCATTTTGGGCAAAAAAAAAA 584 consensus_175#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||