Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1753 cluster # 1753       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1753#0 length = 533 sequences # 1  
consensus_1753#1 length = 438 sequences # 1  

consensusID : consensus_1753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence
                              [CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGACGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA]

[+] EMBL CA753019             [CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGACGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA]


>consensus_1753#0 CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGA CGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGC GCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCA TCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGC TGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCT TTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTC CGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGC TGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA



consensusID : consensus_1753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence
                              [TCCAGGCCTTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCGTGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTTTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATTTTGAGAGCAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATGATGCAGTCAGTTACTATTTACTACAACGACGGCGTCCTC]

[+] EMBL CB680300             [TCCAGGCCTTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCGTGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTTTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATTTTGAGAGCAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATGATGCAGTCAGTTACTATTTACTACAACGACGGCGTCCTC]


>consensus_1753#1 TCCAGGCCTTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCG AGGTCGCGCCGTGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCG GCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCA GCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTGCTT CTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTT TCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATTTTGAGAG CAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATGATGCAGTCAGTTACTATTTAC TACAACGACGGCGTCCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1753#0      CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGA 60
consensus_1753#1      ------------------------------------------------------------
                                                                                  

consensus_1753#0      CGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGC 120
consensus_1753#1      ------------------------------TCCAGGCCTTCCGGACCTCGTCCCGCTCGC 30
                                                    ******   *********************

consensus_1753#0      GCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCA 180
consensus_1753#1      GCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCGTGGCAGCAGCAGCAGCCCA 90
                      **************************************** *******************

consensus_1753#0      TCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGC 240
consensus_1753#1      TCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGC 150
                      ************************************************************

consensus_1753#0      TGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCT 300
consensus_1753#1      TGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCT 210
                      ************************************************************

consensus_1753#0      TTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT 360
consensus_1753#1      TTCAGGCCGGCCCGTCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTC-------------- 256
                      ************************** *******************              

consensus_1753#0      CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTC 420
consensus_1753#1      -------------------------------------AGCGTCGTCGTCATCGTCAGCTC 279
                                                           ***********************

consensus_1753#0      CGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGC 480
consensus_1753#1      CGGCGGCCATGGCTTACCGTTTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGC 339
                      ******************** ***************************************

consensus_1753#0      TGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA------- 533
consensus_1753#1      TGATAAGGTGAATTTTGAGAGCAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATG 399
                      ************* ************************* *************       

consensus_1753#0      ---------------------------------------
consensus_1753#1      ATGCAGTCAGTTACTATTTACTACAACGACGGCGTCCTC 438
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)