These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGACGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA] [+] EMBL CA753019 [CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGACGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA] consensusID : consensus_1753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [TCCAGGCCTTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCGTGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTTTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATTTTGAGAGCAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATGATGCAGTCAGTTACTATTTACTACAACGACGGCGTCCTC] [+] EMBL CB680300 [TCCAGGCCTTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCGTGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTTTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATTTTGAGAGCAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATGATGCAGTCAGTTACTATTTACTACAACGACGGCGTCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1753#0 CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGA 60 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 CGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGC 120 consensus_1753#1 ------------------------------TCCAGGCCTTCCGGACCTCGTCCCGCTCGC 30 ****** ********************* consensus_1753#0 GCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCA 180 consensus_1753#1 GCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCGTGGCAGCAGCAGCAGCCCA 90 **************************************** ******************* consensus_1753#0 TCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGC 240 consensus_1753#1 TCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGC 150 ************************************************************ consensus_1753#0 TGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCT 300 consensus_1753#1 TGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCT 210 ************************************************************ consensus_1753#0 TTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT 360 consensus_1753#1 TTCAGGCCGGCCCGTCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTC-------------- 256 ************************** ******************* consensus_1753#0 CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTC 420 consensus_1753#1 -------------------------------------AGCGTCGTCGTCATCGTCAGCTC 279 *********************** consensus_1753#0 CGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGC 480 consensus_1753#1 CGGCGGCCATGGCTTACCGTTTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGC 339 ******************** *************************************** consensus_1753#0 TGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA------- 533 consensus_1753#1 TGATAAGGTGAATTTTGAGAGCAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATG 399 ************* ************************* ************* consensus_1753#0 --------------------------------------- consensus_1753#1 ATGCAGTCAGTTACTATTTACTACAACGACGGCGTCCTC 438 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||