cluster # 176

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Oryza sativa
cluster # 176 cluster # 176 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_176#0 length = 692 sequences # 1

consensus_176#1 length = 676 sequences # 1

consensusID : consensus_176#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [TTTTGATAAATATTTTCTTGCACTTCTATGTGCAAAGTGCAAAGAGCAGTGCATAGTCAAAGTCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATATGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCATATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAGCTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCACTATGATATCTGGACTCAATACCAATTCCTGGACTGCAAGTGGTAATATGAGAACACAGAGATATCACTGTAATATGATGTTGAACACCACCTACAACAAAAGGAAGCAATCCATGACAATTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCANAATAAAAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATATAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAAGGGGCAGCAAAAAACCACATTCTGCCCATCANATACTACCAAACTATTGATAATCCCATACTGANAAATGAAACTATTCCTCAGTTAATCGGTC]

[+] EMBL CA761267             [TTTTGATAAATATTTTCTTGCACTTCTATGTGCAAAGTGCAAAGAGCAGTGCATAGTCAAAGTCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATATGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCATATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAGCTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCACTATGATATCTGGACTCAATACCAATTCCTGGACTGCAAGTGGTAATATGAGAACACAGAGATATCACTGTAATATGATGTTGAACACCACCTACAACAAAAGGAAGCAATCCATGACAATTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCANAATAAAAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATATAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAAGGGGCAGCAAAAAACCACATTCTGCCCATCANATACTACCAAACTATTGATAATCCCATACTGANAAATGAAACTATTCCTCAGTTAATCGGTC]




>consensus_176#0
TTTTGATAAATATTTTCTTGCACTTCTATGTGCAAAGTGCAAAGAGCAGTGCATAGTCAA
AGTCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATA
TGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCAT
ATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAG
CTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCA
CTATGATATCTGGACTCAATACCAATTCCTGGACTGCAAGTGGTAATATGAGAACACAGA
GATATCACTGTAATATGATGTTGAACACCACCTACAACAAAAGGAAGCAATCCATGACAA
TTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCANAATAA
AAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATA
TAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAAGG
GGCAGCAAAAAACCACATTCTGCCCATCANATACTACCAAACTATTGATAATCCCATACT
GANAAATGAAACTATTCCTCAGTTAATCGGTC

consensusID : consensus_176#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [TTTTTTTTTTAAGAGCAGTGCATAGTCAAAATCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATATGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCATATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAGCTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCACTATGATATCTGGACTCAATACCAATCCCTGGACTGCAAGTGGTAATATGAGAACACAGAGATATCACCGTAATATGATGTTGAACACCACCTACAACAAAAGGGAGCAATCCATGACAATTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCATAATAAAAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATATAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAGGGGGCTGCAAAAAACCACATTCTGCCCATCAAATACTACCAAACTATTGATAATCCAATACTGAAAAAATGAAACCCCCCTTGTCTCCGCAACCTAATCCAAGCTTATC]

[+] EMBL CA760876             [TTTTTTTTTTAAGAGCAGTGCATAGTCAAAATCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATATGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCATATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAGCTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCACTATGATATCTGGACTCAATACCAATCCCTGGACTGCAAGTGGTAATATGAGAACACAGAGATATCACCGTAATATGATGTTGAACACCACCTACAACAAAAGGGAGCAATCCATGACAATTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCATAATAAAAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATATAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAGGGGGCTGCAAAAAACCACATTCTGCCCATCAAATACTACCAAACTATTGATAATCCAATACTGAAAAAATGAAACCCCCCTTGTCTCCGCAACCTAATCCAAGCTTATC]




>consensus_176#1
TTTTTTTTTTAAGAGCAGTGCATAGTCAAAATCTTGCACTGCGAATGTCTAAAATGCATA
CATGACTCATGACCAAGCAGGCCATTATATGTTACTGCAACATAAAAGATGCTACGGCAA
TCTAAGAACTGTGCTACAAAAACCACCATATAAAAACTAAATAAATTGAAATTTACATCT
TTCATGTACATATACATAATTTTGCGTAGCTTAACAATTGAGACATGCTGCATATTTATA
TTGCTTCACTGAAGAACACAGAGATATCACTATGATATCTGGACTCAATACCAATCCCTG
GACTGCAAGTGGTAATATGAGAACACAGAGATATCACCGTAATATGATGTTGAACACCAC
CTACAACAAAAGGGAGCAATCCATGACAATTGGTCAACTAAGACAATGTCCACAATAGAA
GGTCAAGACCACATAACACATCATAATAAAAGATTGGATTTGATGCAGGTTAGTATAAAG
TAAAATGAGTTAACTAAAAAGTTCTCATATAAACCACAAATAATGAGTCAAAACAGTTGT
GTACTAATTATTCTAGTACCAACTCAGGGGGCTGCAAAAAACCACATTCTGCCCATCAAA
TACTACCAAACTATTGATAATCCAATACTGAAAAAATGAAACCCCCCTTGTCTCCGCAAC
CTAATCCAAGCTTATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_176#0      TTTTGATAAATATTTTCTTGCACTTCTATGTGCAAAGTGCAAAGAGCAGTGCATAGTCAA 60
consensus_176#1      -------------------------------TTTTTTTTTTAAGAGCAGTGCATAGTCAA 29
                                                          *   *******************

consensus_176#0      AGTCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATA 120
consensus_176#1      AATCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATA 89
                     * **********************************************************

consensus_176#0      TGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCAT 180
consensus_176#1      TGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCAT 149
                     ************************************************************

consensus_176#0      ATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAG 240
consensus_176#1      ATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAG 209
                     ************************************************************

consensus_176#0      CTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCA 300
consensus_176#1      CTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCA 269
                     ************************************************************

consensus_176#0      CTATGATATCTGGACTCAATACCAATTCCTGGACTGCAAGTGGTAATATGAGAACACAGA 360
consensus_176#1      CTATGATATCTGGACTCAATACCAATCCCTGGACTGCAAGTGGTAATATGAGAACACAGA 329
                     ************************** *********************************

consensus_176#0      GATATCACTGTAATATGATGTTGAACACCACCTACAACAAAAGGAAGCAATCCATGACAA 420
consensus_176#1      GATATCACCGTAATATGATGTTGAACACCACCTACAACAAAAGGGAGCAATCCATGACAA 389
                     ******** *********************************** ***************

consensus_176#0      TTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCANAATAA 480
consensus_176#1      TTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCATAATAA 449
                     ****************************************************** *****

consensus_176#0      AAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATA 540
consensus_176#1      AAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATA 509
                     ************************************************************

consensus_176#0      TAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAAGG 600
consensus_176#1      TAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAGGG 569
                     ********************************************************* **

consensus_176#0      GGCAGCAAAAAACCACATTCTGCCCATCANATACTACCAAACTATTGATAATCCCATACT 660
consensus_176#1      GGCTGCAAAAAACCACATTCTGCCCATCAAATACTACCAAACTATTGATAATCCAATACT 629
                     *** ************************* ************************ *****

consensus_176#0      GANAAA-TGAAACTATTC----CTCAGTTAATCGGTC---------- 692
consensus_176#1      GAAAAAATGAAACCCCCCTTGTCTCCGCAACCTAATCCAAGCTTATC 676
                     ** *** ******    *    *** *  *     **