cluster # 1768

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Oryza sativa
cluster # 1768 cluster # 1768 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1768#0 length = 782 sequences # 1

consensus_1768#1 length = 545 sequences # 1

consensusID : consensus_1768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 782
fasta sequence

                              [AGGAGGCAATCGGTGTGCTGAAGAAGATGTCCGAGAAGGGAGTGGCGCCGGATGTTGTGACATATAACACACTGATCAAGGGGCTCTCGGATGTGCTCGAGATGGATGAAGCAATGTGGTTGCTTGAGGAGATGGTTCGAGGTGAGAATATAGTTAAGCCTAATGTGGTGACATTCAACTCGGTTATACAGGGCCTTTGTGATATTGGTAGGATGAGGCAAGCGTTCCAAGTCCGTGCGATGATGGAAGAGACTGGGTGTATGGTTAACTTGGTGACATACAATCTGCTGATTGGTGGACTCCTTAGAGTCCACAAGGTAAGGAAGGCTATGGAGCTGATGGATGAGATGACTTGTCTAGGGCTGGAGCCTGATTCATTCACCTATAGTATACTGATAAAGGGTTCCTGCAAAATGTGGCAAGTTGACCGTGCAGAAGATCTTTTATCTACAATGAGAGATCGTGGGATAGAACCTGAGCTATTTCACTATATTCCTTTGCTTGTAGCCATGTGTGAACAGGGTATGATGGAACGAGCGAGGAATTTGTTCAATGAAATGGACAACAACTTTCCACTAGATGTGGTTGCATATAGCACTATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCGAAAGAGTTGCTTAAGAGCATGGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTTGCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGCTTT]

[+] EMBL CB618725             [AGGAGGCAATCGGTGTGCTGAAGAAGATGTCCGAGAAGGGAGTGGCGCCGGATGTTGTGACATATAACACACTGATCAAGGGGCTCTCGGATGTGCTCGAGATGGATGAAGCAATGTGGTTGCTTGAGGAGATGGTTCGAGGTGAGAATATAGTTAAGCCTAATGTGGTGACATTCAACTCGGTTATACAGGGCCTTTGTGATATTGGTAGGATGAGGCAAGCGTTCCAAGTCCGTGCGATGATGGAAGAGACTGGGTGTATGGTTAACTTGGTGACATACAATCTGCTGATTGGTGGACTCCTTAGAGTCCACAAGGTAAGGAAGGCTATGGAGCTGATGGATGAGATGACTTGTCTAGGGCTGGAGCCTGATTCATTCACCTATAGTATACTGATAAAGGGTTCCTGCAAAATGTGGCAAGTTGACCGTGCAGAAGATCTTTTATCTACAATGAGAGATCGTGGGATAGAACCTGAGCTATTTCACTATATTCCTTTGCTTGTAGCCATGTGTGAACAGGGTATGATGGAACGAGCGAGGAATTTGTTCAATGAAATGGACAACAACTTTCCACTAGATGTGGTTGCATATAGCACTATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCGAAAGAGTTGCTTAAGAGCATGGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTTGCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGCTTT]




>consensus_1768#0
AGGAGGCAATCGGTGTGCTGAAGAAGATGTCCGAGAAGGGAGTGGCGCCGGATGTTGTGA
CATATAACACACTGATCAAGGGGCTCTCGGATGTGCTCGAGATGGATGAAGCAATGTGGT
TGCTTGAGGAGATGGTTCGAGGTGAGAATATAGTTAAGCCTAATGTGGTGACATTCAACT
CGGTTATACAGGGCCTTTGTGATATTGGTAGGATGAGGCAAGCGTTCCAAGTCCGTGCGA
TGATGGAAGAGACTGGGTGTATGGTTAACTTGGTGACATACAATCTGCTGATTGGTGGAC
TCCTTAGAGTCCACAAGGTAAGGAAGGCTATGGAGCTGATGGATGAGATGACTTGTCTAG
GGCTGGAGCCTGATTCATTCACCTATAGTATACTGATAAAGGGTTCCTGCAAAATGTGGC
AAGTTGACCGTGCAGAAGATCTTTTATCTACAATGAGAGATCGTGGGATAGAACCTGAGC
TATTTCACTATATTCCTTTGCTTGTAGCCATGTGTGAACAGGGTATGATGGAACGAGCGA
GGAATTTGTTCAATGAAATGGACAACAACTTTCCACTAGATGTGGTTGCATATAGCACTA
TGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCGAAAGAGTTGCTTAAGAGCA
TGGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTTG
CTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGCT
TT

consensusID : consensus_1768#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [GGGGNGGGGGATCCNTNGGTCCNACAAGTAAGGAAGCTTTGGAGTTGTTGGATGANGAGATTNTTTAGGGTGGGCCCGATTCATTCACCTATAGTATACNATAAAGGGTTTNTGCCAAATGNGGCAAGTGACCGTGCAGANATNTTTTNTNTACAATGAGAGATCGTGGGATAGNACCTGAGCTATTTCACTATATTCCTTTGCTTGTANCCATGTGTGNACAGGGTATGATGGAACGAGCGAGGAATTTGTTCAATGAAATGGACAACAACTTTCCCACTAGATGTGGTTGCATATAGCACTATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCAAAAGAGTTGCTTAAGAGCATAGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTTGCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGCTTTTTGCCTGACGTTGCCGTATTTGATTCACTGATCCAAGGTTATAGCACAAAAGGAGAGAT]

[+] EMBL AA753639             [GGGGNGGGGGATCCNTNGGTCCNACAAGTAAGGAAGCTTTGGAGTTGTTGGATGANGAGATTNTTTAGGGTGGGCCCGATTCATTCACCTATAGTATACNATAAAGGGTTTNTGCCAAATGNGGCAAGTGACCGTGCAGANATNTTTTNTNTACAATGAGAGATCGTGGGATAGNACCTGAGCTATTTCACTATATTCCTTTGCTTGTANCCATGTGTGNACAGGGTATGATGGAACGAGCGAGGAATTTGTTCAATGAAATGGACAACAACTTTCCCACTAGATGTGGTTGCATATAGCACTATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCAAAAGAGTTGCTTAAGAGCATAGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTTGCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGCTTTTTGCCTGACGTTGCCGTATTTGATTCACTGATCCAAGGTTATAGCACAAAAGGAGAGAT]




>consensus_1768#1
GGGGNGGGGGATCCNTNGGTCCNACAAGTAAGGAAGCTTTGGAGTTGTTGGATGANGAGA
TTNTTTAGGGTGGGCCCGATTCATTCACCTATAGTATACNATAAAGGGTTTNTGCCAAAT
GNGGCAAGTGACCGTGCAGANATNTTTTNTNTACAATGAGAGATCGTGGGATAGNACCTG
AGCTATTTCACTATATTCCTTTGCTTGTANCCATGTGTGNACAGGGTATGATGGAACGAG
CGAGGAATTTGTTCAATGAAATGGACAACAACTTTCCCACTAGATGTGGTTGCATATAGC
ACTATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCAAAAGAGTTGCTTAAG
AGCATAGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATG
TTTGCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGT
GGCTTTTTGCCTGACGTTGCCGTATTTGATTCACTGATCCAAGGTTATAGCACAAAAGGA
GAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1768#0      AGGAGGCAATCGGTGTGCTGAAGAAGATGTCCGAGAAGGGAGTGGCGCCGGATGTTGTGA 60
consensus_1768#1      ------------------------------------------------------------
                                                                                  

consensus_1768#0      CATATAACACACTGATCAAGGGGCTCTCGGATGTGCTCGAGATGGATGAAGCAATGTGGT 120
consensus_1768#1      ------------------------------------------------------------
                                                                                  

consensus_1768#0      TGCTTGAGGAGATGGTTCGAGGTGAGAATATAGTTAAGCCTAATGTGGTGACATTCAACT 180
consensus_1768#1      ------------------------------------------------------------
                                                                                  

consensus_1768#0      CGGTTATACAGGGCCTTTGTGATATTGGTAGGATGAGGCAAGCGTTCCAAGTCCGTGCGA 240
consensus_1768#1      ------------------------------------------------------------
                                                                                  

consensus_1768#0      TGATGGAAGAGACTGGGTGTATGGTTAACTTGGTGACATACAATCTGCTGATTGGTGGAC 300
consensus_1768#1      -------------------------------------------------GGGGNGGGGGA 11
                                                                       *    * **  

consensus_1768#0      TCCTTAGAGTCCACAAGGTAAGGAAGGCTATGGAGCTGATGGATGAGATGACTTGTCTAG 360
consensus_1768#1      TCCNTNGGTCCNACAAG-TAAGGAAG-CTTTGGAGTTGTTGGATGANGAGA-TTNTTTAG 68
                      *** * *   * ***** ******** ** ***** ** *******   ** ** * ***

consensus_1768#0      GGCTGGAGCCTGATTCATTCACCTATAGTATACTGATAAAGGGTTCCTGCAAAATGTGGC 420
consensus_1768#1      GGT--GGGCCCGATTCATTCACCTATAGTATACN-ATAAAGGGTTTNTGCCAAATGNGGC 125
                      **   * *** **********************  **********  *** ***** ***

consensus_1768#0      AAGTTGACCGTGCAGAAGATCTTTTATCTACAATGAGAGATCGTGGGATAGAACCTGAGC 480
consensus_1768#1      AAGT-GACCGTGCAGAN-ATNTTTTNTNTACAATGAGAGATCGTGGGATAGNACCTGAGC 183
                      **** ***********  ** **** * *********************** ********

consensus_1768#0      TATTTCACTATATTCCTTTGCTTGTAGCCATGTGTGAACAGGGTATGATGGAACGAGCGA 540
consensus_1768#1      TATTTCACTATATTCCTTTGCTTGTANCCATGTGTGNACAGGGTATGATGGAACGAGCGA 243
                      ************************** ********* ***********************

consensus_1768#0      GGAATTTGTTCAATGAAATGGACAACAACTTTCC-ACTAGATGTGGTTGCATATAGCACT 599
consensus_1768#1      GGAATTTGTTCAATGAAATGGACAACAACTTTCCCACTAGATGTGGTTGCATATAGCACT 303
                      ********************************** *************************

consensus_1768#0      ATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCGAAAGAGTTGCTTAAGAGC 659
consensus_1768#1      ATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCAAAAGAGTTGCTTAAGAGC 363
                      ***************************************** ******************

consensus_1768#0      ATGGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTT 719
consensus_1768#1      ATAGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTT 423
                      ** *********************************************************

consensus_1768#0      GCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGC 779
consensus_1768#1      GCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGC 483
                      ************************************************************

consensus_1768#0      TTT--------------------------------------------------------- 782
consensus_1768#1      TTTTTGCCTGACGTTGCCGTATTTGATTCACTGATCCAAGGTTATAGCACAAAAGGAGAG 543
                      ***                                                         

consensus_1768#0      --
consensus_1768#1      AT 545