These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2206 fasta sequence [TCCGTTCGCATCTGGCGCACTGCCGCGATGTCATCGCTAAGTCCTGATGCCGTGTCGCCGTCGCTACCTAGAACTGAGAAACTGGTGCTGGCTGTGACCCATCATTGGCCGGCCTGCCTGCCGGAGTCCTTGTCGGCTGCAACGCCTGACGGCCTGATCGTCTACTCTAATCAGCAATCAGGATAGCCCTGGTTCTGGAGAAGAGTAGACGGTGCGGTGGAGAGAAGGAGGAAGAGAAAAAAGTTATGGTCTATACCTGTAATTTGGAGGGATGTCGTCCTCGTTTCTGTAGTAGTTGTAGAAGTGAGCATGCTTAAAAACCAGAAAAAAGAACGCAGCAATGCTATCATTCGCCTGTTGCACTCGCAATCGAACGTTCCAAAAAGAAAAAAAAAATCCTGATTGCGACGGGGAGTTTAGTAGTAGGTGAGACGCATGTTGCACTGCCTTGGCGGCCCAGTCTCAAGTAGTGGAGTTGTAACATTTGGCCCAGTCTCGGCTAGGCCCATGCTGTCCTCCGGCCGACGAAAGCAACCCCACTGGGATAGGGTTTCCTTTCATCACGTCTTTGATACGTAAATCCGAATCCAGTCGAGGGAAGAAGATGGTGACGCCGGACAAGAAGAGGAGGAAGAAACTCGCGGAGCCGGAGCCGACGCCGACGCCGGCGCCGGAGCCGGTACCTCGTCTCCTCCGCGTTCGTCCAGGGAACAAGAAGAAGAACAAGGGGGCCTCACCTGAGAAGCAGCCGCCGGTGTACATGGTGTTGGCGCACGGAGTCGAGGAAGAGCCCACCACCCACTCCGTAATCGAGGTCGCCGCCTGCGCCGCCGCCCGCCGCCTGCTTAACACCGGCAGCGGCCGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGGGACACGCACCGTGGGCGTCGGCGTGGAGTTGACCACCGTCTACGACCCCGAGACATCCACGGAGCGCGGCGGCCCGCGACTCATCTTCCCCAAGGTGAACCCCGTCCTCATCTCGATCTCTGACGACGGCGGCGGTGTAGTCGGCGGCGGCACGCTCTACGCTCTCTCCCGCACCCCGGCCGTCGTGAGGCCGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACACCGTGTGGCGCGAACTCCCATCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTTCCTCGACCCGCCCAAGTTGCGCGTCGCGGCGTACGCCCTCGTCGGCTCCCACATCCTCCTGTCGGTCTCGGTGCAGCAGCTGCAGCCGCAGCAGCAGCAAGAAGACAAGGGCACCTGCGCCTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACAGCAACCTGCCTTTCGACGGCCAGGCCTTGCCTCTCGGCAGCGACGACGACCACCGCTTCGTCGCCGTCGCCTCCGCCGCCGCCGACGTTACGGTGTACCGCATGGTGGTCGGGATCTCGGCCGTCACGGGGAAGAAGGAGCTGACCATCGTTGCGTTGCGGGTGGTGGTGGCATCCAACTCCAAGTGCCGCATTGTTCCGGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCCGGTCCATTGCTGCTGCTTCCATGGGAAAGGTGGGCAGAGCACGTATTGTTCATCGCACTTACTCTCTGGTGGATGATGGTGAGGACGATTGGGTCGTCATGGTGAAGAAGCAGGATCGGCAGGTTTACAAGCTACGTGATCCATCCTTCTTGGGCGGTTGCTCTTTTTTCCATGTAAAAATTTCAGAGCCTTTCTTTGCTTCTTCCAACATCTTCTGATTCGTTGTCAGCGTCTATTATATCGCTGCTAAGGCCTTGTTTAGTTGGGAAAAAATTTTGGGTTTGGTTGTCACATCAGATATACCGACACACATTTAAGTATTAAACGTAGTCTAATAACAAAACAAATTACAGATTTCGCAGAGATGAATTTATTAAGCCTAATTAATCCGTCATTAGCAAATATTTACTGTAACACCATTGTCAAATCATGGTGCAATTAGGCTTAAAAGATTCGTCTAGCAATTTACACGCAATCTGTGTAATTGTTTCTTTTCCATACATTAAATGCTCCATGCATGTGTCCAAATATTCGATGTGACAGTGTAAAAAATTTTGTTTTGGAAACTAAACAGGGCCTAATTCATCAGCAGC] [+] EMBL AK107289 [TCCGTTCGCATCTGGCGCACTGCCGCGATGTCATCGCTAAGTCCTGATGCCGTGTCGCCGTCGCTACCTAGAACTGAGAAACTGGTGCTGGCTGTGACCCATCATTGGCCGGCCTGCCTGCCGGAGTCCTTGTCGGCTGCAACGCCTGACGGCCTGATCGTCTACTCTAATCAGCAATCAGGATAGCCCTGGTTCTGGAGAAGAGTAGACGGTGCGGTGGAGAGAAGGAGGAAGAGAAAAAAGTTATGGTCTATACCTGTAATTTGGAGGGATGTCGTCCTCGTTTCTGTAGTAGTTGTAGAAGTGAGCATGCTTAAAAACCAGAAAAAAGAACGCAGCAATGCTATCATTCGCCTGTTGCACTCGCAATCGAACGTTCCAAAAAGAAAAAAAAAATCCTGATTGCGACGGGGAGTTTAGTAGTAGGTGAGACGCATGTTGCACTGCCTTGGCGGCCCAGTCTCAAGTAGTGGAGTTGTAACATTTGGCCCAGTCTCGGCTAGGCCCATGCTGTCCTCCGGCCGACGAAAGCAACCCCACTGGGATAGGGTTTCCTTTCATCACGTCTTTGATACGTAAATCCGAATCCAGTCGAGGGAAGAAGATGGTGACGCCGGACAAGAAGAGGAGGAAGAAACTCGCGGAGCCGGAGCCGACGCCGACGCCGGCGCCGGAGCCGGTACCTCGTCTCCTCCGCGTTCGTCCAGGGAACAAGAAGAAGAACAAGGGGGCCTCACCTGAGAAGCAGCCGCCGGTGTACATGGTGTTGGCGCACGGAGTCGAGGAAGAGCCCACCACCCACTCCGTAATCGAGGTCGCCGCCTGCGCCGCCGCCCGCCGCCTGCTTAACACCGGCAGCGGCCGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGGGACACGCACCGTGGGCGTCGGCGTGGAGTTGACCACCGTCTACGACCCCGAGACATCCACGGAGCGCGGCGGCCCGCGACTCATCTTCCCCAAGGTGAACCCCGTCCTCATCTCGATCTCTGACGACGGCGGCGGTGTAGTCGGCGGCGGCACGCTCTACGCTCTCTCCCGCACCCCGGCCGTCGTGAGGCCGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACACCGTGTGGCGCGAACTCCCATCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTTCCTCGACCCGCCCAAGTTGCGCGTCGCGGCGTACGCCCTCGTCGGCTCCCACATCCTCCTGTCGGTCTCGGTGCAGCAGCTGCAGCCGCAGCAGCAGCAAGAAGACAAGGGCACCTGCGCCTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACAGCAACCTGCCTTTCGACGGCCAGGCCTTGCCTCTCGGCAGCGACGACGACCACCGCTTCGTCGCCGTCGCCTCCGCCGCCGCCGACGTTACGGTGTACCGCATGGTGGTCGGGATCTCGGCCGTCACGGGGAAGAAGGAGCTGACCATCGTTGCGTTGCGGGTGGTGGTGGCATCCAACTCCAAGTGCCGCATTGTTCCGGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCCGGTCCATTGCTGCTGCTTCCATGGGAAAGGTGGGCAGAGCACGTATTGTTCATCGCACTTACTCTCTGGTGGATGATGGTGAGGACGATTGGGTCGTCATGGTGAAGAAGCAGGATCGGCAGGTTTACAAGCTACGTGATCCATCCTTCTTGGGCGGTTGCTCTTTTTTCCATGTAAAAATTTCAGAGCCTTTCTTTGCTTCTTCCAACATCTTCTGATTCGTTGTCAGCGTCTATTATATCGCTGCTAAGGCCTTGTTTAGTTGGGAAAAAATTTTGGGTTTGGTTGTCACATCAGATATACCGACACACATTTAAGTATTAAACGTAGTCTAATAACAAAACAAATTACAGATTTCGCAGAGATGAATTTATTAAGCCTAATTAATCCGTCATTAGCAAATATTTACTGTAACACCATTGTCAAATCATGGTGCAATTAGGCTTAAAAGATTCGTCTAGCAATTTACACGCAATCTGTGTAATTGTTTCTTTTCCATACATTAAATGCTCCATGCATGTGTCCAAATATTCGATGTGACAGTGTAAAAAATTTTGTTTTGGAAACTAAACAGGGCCTAATTCATCAGCAGC] consensusID : consensus_179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 898 fasta sequence [GTATCTTATTAGGATAGAAAAACCCGTAGGATTTTAACCATATCCTAACTAACCGGCATTAGCCGATAAAATCAACCAACAGACACCGGCAGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGGGACACGCATCGTGGGCGTCGGTGTGGAGTTGACCACCGTCTACGACCCCGAGGCCTCCACGGAGCGCGGCGGCCCGCGACTCGTCTTCCCCAAGTTGAACCCCGTCCTCATCTCGATCTCGGACGACGGCGGCGGCGGCGGTGGCGGCGGCAAGCTCTACGCTCTCTCCCGCACCCCGGCCGTCGTGAGGCAGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACACCGTGTGGCGCCAGCTGCCGTCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTTCCTCGACCCGCCCAAGGTGCGCGTAACGGCGTACGCCCTCGTCGGCTCACACATCCTCCTCTCGGTGTCGGTGCGGCCGCCGCAGCAGCAGCAGCAAGATCACAAGGGCACATGCGCCTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACACCAACCTGCCTTTCGACGGCCAGGCCTTGCCTCTCGGCAGCGACGACCACCGCTTCGTCGCCGCCGCCGCCGACGTTGCGGTGTACCGCATGGTGGTGGGGATCTCGGCCGTCACGGGGAAGAAGGAGCTGACCATCGTTGAGCTGCGGGTGGTGGTGGCATCCAATTGCCGCATTGTTCCGGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCTGATCCATTGCTGCTGCTTCCGTGGGAAAGGTGGGCAAAGCACGTATCGTTCATCGCACTTACTCTTTGGTGGAGAATA] [-] EMBL AK070991 [GTATCTTATTAGGATAGAAAAACCCGTAGGATTTTAACCATATCCTAACTAACCGGCATTAGCCGATAAAATCAACCAACAGACACCGGCAGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGGGACACGCATCGTGGGCGTCGGTGTGGAGTTGACCACCGTCTACGACCCCGAGGCCTCCACGGAGCGCGGCGGCCCGCGACTCGTCTTCCCCAAGTTGAACCCCGTCCTCATCTCGATCTCGGACGACGGCGGCGGCGGCGGTGGCGGCGGCAAGCTCTACGCTCTCTCCCGCACCCCGGCCGTCGTGAGGCAGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACACCGTGTGGCGCCAGCTGCCGTCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTTCCTCGACCCGCCCAAGGTGCGCGTAACGGCGTACGCCCTCGTCGGCTCACACATCCTCCTCTCGGTGTCGGTGCGGCCGCCGCAGCAGCAGCAGCAAGATCACAAGGGCACATGCGCCTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACACCAACCTGCCTTTCGACGGCCAGGCCTTGCCTCTCGGCAGCGACGACCACCGCTTCGTCGCCGCCGCCGCCGACGTTGCGGTGTACCGCATGGTGGTGGGGATCTCGGCCGTCACGGGGAAGAAGGAGCTGACCATCGTTGAGCTGCGGGTGGTGGTGGCATCCAATTGCCGCATTGTTCCGGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCTGATCCATTGCTGCTGCTTCCGTGGGAAAGGTGGGCAAAGCACGTATCGTTCATCGCACTTACTCTTTGGTGGAGAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_179#0 TCCGTTCGCATCTGGCGCACTGCCGCGATGTCATCGCTAAGTCCTGATGCCGTGTCGCCG 60 consensus_179#1 ------------------------------------------------------------ consensus_179#0 TCGCTACCTAGAACTGAGAAACTGGTGCTGGCTGTGACCCATCATTGGCCGGCCTGCCTG 120 consensus_179#1 ------------------------------------------------------------ consensus_179#0 CCGGAGTCCTTGTCGGCTGCAACGCCTGACGGCCTGATCGTCTACTCTAATCAGCAATCA 180 consensus_179#1 ------------------------------------------------------------ consensus_179#0 GGATAGCCCTGGTTCTGGAGAAGAGTAGACGGTGCGGTGGAGAGAAGGAGGAAGAGAAAA 240 consensus_179#1 ------------------------------------------------------------ consensus_179#0 AAGTTATGGTCTATACCTGTAATTTGGAGGGATGTCGTCCTCGTTTCTGTAGTAGTTGTA 300 consensus_179#1 ------------------------------------------------------------ consensus_179#0 GAAGTGAGCATGCTTAAAAACCAGAAAAAAGAACGCAGCAATGCTATCATTCGCCTGTTG 360 consensus_179#1 ------------------------------------------------------------ consensus_179#0 CACTCGCAATCGAACGTTCCAAAAAGAAAAAAAAAATCCTGATTGCGACGGGGAGTTTAG 420 consensus_179#1 ------------------------------------------------------------ consensus_179#0 TAGTAGGTGAGACGCATGTTGCACTGCCTTGGCGGCCCAGTCTCAAGTAGTGGAGTTGTA 480 consensus_179#1 ------------------------------------------------------------ consensus_179#0 ACATTTGGCCCAGTCTCGGCTAGGCCCATGCTGTCCTCCGGCCGACGAAAGCAACCCCAC 540 consensus_179#1 ------------------------------------------------------------ consensus_179#0 TGGGATAGGGTTTCCTTTCATCACGTCTTTGATACGTAAATCCGAATCCAGTCGAGGGAA 600 consensus_179#1 ------------------------------------------------------------ consensus_179#0 GAAGATGGTGACGCCGGACAAGAAGAGGAGGAAGAAACTCGCGGAGCCGGAGCCGACGCC 660 consensus_179#1 ------------------------------------------------------------ consensus_179#0 GACGCCGGCGCCGGAGCCGGTACCTCGTCTCCTCCGCGTTCGTCCAGGGAACAAGAAGAA 720 consensus_179#1 ------------------------------------------------------------ consensus_179#0 GAACAAGGGGGCCTCACCTGAGAAGCAGCCGCCGGTGTACATGGTGTTGGCGCACGGAGT 780 consensus_179#1 --------------------------------------GTATCTTATTAGGATAGAAAAA 22 ** * ** * * * consensus_179#0 CGAGGAAGAGCCCACCACCCACTCCGTAATCGAGGTCGCCGCCTGCGCCGCCGCCCGCCG 840 consensus_179#1 CCCGTAGGATTTTAAC---CATATCCTAACTAAC----CGGCATTAGCCGATAAAATCAA 75 * * * ** * * ** * *** * * ** * **** * consensus_179#0 CCTGCTTAACACCGGCAGCGGCCGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGG 900 consensus_179#1 CC-----AACA--GACACCGGCAGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGG 128 ** **** * ** **** ************************************* consensus_179#0 GACACGCACCGTGGGCGTCGGCGTGGAGTTGACCACCGTCTACGACCCCGAGACATCCAC 960 consensus_179#1 GACACGCATCGTGGGCGTCGGTGTGGAGTTGACCACCGTCTACGACCCCGAGGCCTCCAC 188 ******** ************ ****************************** * ***** consensus_179#0 GGAGCGCGGCGGCCCGCGACTCATCTTCCCCAAGGTGAACCCCGTCCTCATCTCGATCTC 1020 consensus_179#1 GGAGCGCGGCGGCCCGCGACTCGTCTTCCCCAAGTTGAACCCCGTCCTCATCTCGATCTC 248 ********************** *********** ************************* consensus_179#0 TGACGACGGCGGCGGTGTAGTCGGCGGCGGCACGCTCTACGCTCTCTCCCGCACCCCGGC 1080 consensus_179#1 GGACGACGGCGGCGGCGGCGGTGGCGGCGGCAAGCTCTACGCTCTCTCCCGCACCCCGGC 308 ************** * * ********** *************************** consensus_179#0 CGTCGTGAGGCCGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACAC 1140 consensus_179#1 CGTCGTGAGGCAGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACAC 368 *********** ************************************************ consensus_179#0 CGTGTGGCGCGAACTCCCATCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTT 1200 consensus_179#1 CGTGTGGCGCCAGCTGCCGTCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTT 428 ********** * ** ** ***************************************** consensus_179#0 CCTCGACCCGCCCAAGTTGCGCGTCGCGGCGTACGCCCTCGTCGGCTCCCACATCCTCCT 1260 consensus_179#1 CCTCGACCCGCCCAAGGTGCGCGTAACGGCGTACGCCCTCGTCGGCTCACACATCCTCCT 488 **************** ******* ********************** *********** consensus_179#0 GTCGGTCTCGGTGCAGCAGCTGCAGCCGCAGCAGCAGCAAGAAGACAAGGGCACCTGCGC 1320 consensus_179#1 CTCGGTGTCGGTGCGGCCGCCGCAGC---AGCAGCAGCAAGATCACAAGGGCACATGCGC 545 ***** ******* ** ** ***** ************* ********** ***** consensus_179#0 CTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACAGCAACCTGCCTTTCGACGG 1380 consensus_179#1 CTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACACCAACCTGCCTTTCGACGG 605 ***************************************** ****************** consensus_179#0 CCAGGCCTTGCCTCTCGGCAGCGACGACGACCACCGCTTCGTCGCCGTCGCCTCCGCCGC 1440 consensus_179#1 CCAGGCCTTGCCTCTCGGCAGCGACGAC---CACCGCTTCGTCGCCG---------CCGC 653 **************************** **************** **** consensus_179#0 CGCCGACGTTACGGTGTACCGCATGGTGGTCGGGATCTCGGCCGTCACGGGGAAGAAGGA 1500 consensus_179#1 CGCCGACGTTGCGGTGTACCGCATGGTGGTGGGGATCTCGGCCGTCACGGGGAAGAAGGA 713 ********** ******************* ***************************** consensus_179#0 GCTGACCATCGTTGCGTTGCGGGTGGTGGTGGCATCCAACTCCAAGTGCCGCATTGTTCC 1560 consensus_179#1 GCTGACCATCGTTGAGCTGCGGGTGGTGGTGGCATCCAATT------GCCGCATTGTTCC 767 ************** * ********************** * ************* consensus_179#0 GGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCCGGTCCAT 1620 consensus_179#1 GGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCTGATCCAT 827 **************************************************** * ***** consensus_179#0 TGCTGCTGCTTCCATGGGAAAGGTGGGCAGAGCACGTATTGTTCATCGCACTTACTCTCT 1680 consensus_179#1 TGCTGCTGCTTCCGTGGGAAAGGTGGGCAAAGCACGTATCGTTCATCGCACTTACTCTTT 887 ************* *************** ********* ****************** * consensus_179#0 GGTGGATGATGGTGAGGACGATTGGGTCGTCATGGTGAAGAAGCAGGATCGGCAGGTTTA 1740 consensus_179#1 GGTGGAGAATA------------------------------------------------- 898 ****** ** consensus_179#0 CAAGCTACGTGATCCATCCTTCTTGGGCGGTTGCTCTTTTTTCCATGTAAAAATTTCAGA 1800 consensus_179#1 ------------------------------------------------------------ consensus_179#0 GCCTTTCTTTGCTTCTTCCAACATCTTCTGATTCGTTGTCAGCGTCTATTATATCGCTGC 1860 consensus_179#1 ------------------------------------------------------------ consensus_179#0 TAAGGCCTTGTTTAGTTGGGAAAAAATTTTGGGTTTGGTTGTCACATCAGATATACCGAC 1920 consensus_179#1 ------------------------------------------------------------ consensus_179#0 ACACATTTAAGTATTAAACGTAGTCTAATAACAAAACAAATTACAGATTTCGCAGAGATG 1980 consensus_179#1 ------------------------------------------------------------ consensus_179#0 AATTTATTAAGCCTAATTAATCCGTCATTAGCAAATATTTACTGTAACACCATTGTCAAA 2040 consensus_179#1 ------------------------------------------------------------ consensus_179#0 TCATGGTGCAATTAGGCTTAAAAGATTCGTCTAGCAATTTACACGCAATCTGTGTAATTG 2100 consensus_179#1 ------------------------------------------------------------ consensus_179#0 TTTCTTTTCCATACATTAAATGCTCCATGCATGTGTCCAAATATTCGATGTGACAGTGTA 2160 consensus_179#1 ------------------------------------------------------------ consensus_179#0 AAAAATTTTGTTTTGGAAACTAAACAGGGCCTAATTCATCAGCAGC 2206 consensus_179#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||