|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2206 fasta sequence
[TCCGTTCGCATCTGGCGCACTGCCGCGATGTCATCGCTAAGTCCTGATGCCGTGTCGCCGTCGCTACCTAGAACTGAGAAACTGGTGCTGGCTGTGACCCATCATTGGCCGGCCTGCCTGCCGGAGTCCTTGTCGGCTGCAACGCCTGACGGCCTGATCGTCTACTCTAATCAGCAATCAGGATAGCCCTGGTTCTGGAGAAGAGTAGACGGTGCGGTGGAGAGAAGGAGGAAGAGAAAAAAGTTATGGTCTATACCTGTAATTTGGAGGGATGTCGTCCTCGTTTCTGTAGTAGTTGTAGAAGTGAGCATGCTTAAAAACCAGAAAAAAGAACGCAGCAATGCTATCATTCGCCTGTTGCACTCGCAATCGAACGTTCCAAAAAGAAAAAAAAAATCCTGATTGCGACGGGGAGTTTAGTAGTAGGTGAGACGCATGTTGCACTGCCTTGGCGGCCCAGTCTCAAGTAGTGGAGTTGTAACATTTGGCCCAGTCTCGGCTAGGCCCATGCTGTCCTCCGGCCGACGAAAGCAACCCCACTGGGATAGGGTTTCCTTTCATCACGTCTTTGATACGTAAATCCGAATCCAGTCGAGGGAAGAAGATGGTGACGCCGGACAAGAAGAGGAGGAAGAAACTCGCGGAGCCGGAGCCGACGCCGACGCCGGCGCCGGAGCCGGTACCTCGTCTCCTCCGCGTTCGTCCAGGGAACAAGAAGAAGAACAAGGGGGCCTCACCTGAGAAGCAGCCGCCGGTGTACATGGTGTTGGCGCACGGAGTCGAGGAAGAGCCCACCACCCACTCCGTAATCGAGGTCGCCGCCTGCGCCGCCGCCCGCCGCCTGCTTAACACCGGCAGCGGCCGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGGGACACGCACCGTGGGCGTCGGCGTGGAGTTGACCACCGTCTACGACCCCGAGACATCCACGGAGCGCGGCGGCCCGCGACTCATCTTCCCCAAGGTGAACCCCGTCCTCATCTCGATCTCTGACGACGGCGGCGGTGTAGTCGGCGGCGGCACGCTCTACGCTCTCTCCCGCACCCCGGCCGTCGTGAGGCCGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACACCGTGTGGCGCGAACTCCCATCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTTCCTCGACCCGCCCAAGTTGCGCGTCGCGGCGTACGCCCTCGTCGGCTCCCACATCCTCCTGTCGGTCTCGGTGCAGCAGCTGCAGCCGCAGCAGCAGCAAGAAGACAAGGGCACCTGCGCCTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACAGCAACCTGCCTTTCGACGGCCAGGCCTTGCCTCTCGGCAGCGACGACGACCACCGCTTCGTCGCCGTCGCCTCCGCCGCCGCCGACGTTACGGTGTACCGCATGGTGGTCGGGATCTCGGCCGTCACGGGGAAGAAGGAGCTGACCATCGTTGCGTTGCGGGTGGTGGTGGCATCCAACTCCAAGTGCCGCATTGTTCCGGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCCGGTCCATTGCTGCTGCTTCCATGGGAAAGGTGGGCAGAGCACGTATTGTTCATCGCACTTACTCTCTGGTGGATGATGGTGAGGACGATTGGGTCGTCATGGTGAAGAAGCAGGATCGGCAGGTTTACAAGCTACGTGATCCATCCTTCTTGGGCGGTTGCTCTTTTTTCCATGTAAAAATTTCAGAGCCTTTCTTTGCTTCTTCCAACATCTTCTGATTCGTTGTCAGCGTCTATTATATCGCTGCTAAGGCCTTGTTTAGTTGGGAAAAAATTTTGGGTTTGGTTGTCACATCAGATATACCGACACACATTTAAGTATTAAACGTAGTCTAATAACAAAACAAATTACAGATTTCGCAGAGATGAATTTATTAAGCCTAATTAATCCGTCATTAGCAAATATTTACTGTAACACCATTGTCAAATCATGGTGCAATTAGGCTTAAAAGATTCGTCTAGCAATTTACACGCAATCTGTGTAATTGTTTCTTTTCCATACATTAAATGCTCCATGCATGTGTCCAAATATTCGATGTGACAGTGTAAAAAATTTTGTTTTGGAAACTAAACAGGGCCTAATTCATCAGCAGC]
[+] EMBL AK107289 [TCCGTTCGCATCTGGCGCACTGCCGCGATGTCATCGCTAAGTCCTGATGCCGTGTCGCCGTCGCTACCTAGAACTGAGAAACTGGTGCTGGCTGTGACCCATCATTGGCCGGCCTGCCTGCCGGAGTCCTTGTCGGCTGCAACGCCTGACGGCCTGATCGTCTACTCTAATCAGCAATCAGGATAGCCCTGGTTCTGGAGAAGAGTAGACGGTGCGGTGGAGAGAAGGAGGAAGAGAAAAAAGTTATGGTCTATACCTGTAATTTGGAGGGATGTCGTCCTCGTTTCTGTAGTAGTTGTAGAAGTGAGCATGCTTAAAAACCAGAAAAAAGAACGCAGCAATGCTATCATTCGCCTGTTGCACTCGCAATCGAACGTTCCAAAAAGAAAAAAAAAATCCTGATTGCGACGGGGAGTTTAGTAGTAGGTGAGACGCATGTTGCACTGCCTTGGCGGCCCAGTCTCAAGTAGTGGAGTTGTAACATTTGGCCCAGTCTCGGCTAGGCCCATGCTGTCCTCCGGCCGACGAAAGCAACCCCACTGGGATAGGGTTTCCTTTCATCACGTCTTTGATACGTAAATCCGAATCCAGTCGAGGGAAGAAGATGGTGACGCCGGACAAGAAGAGGAGGAAGAAACTCGCGGAGCCGGAGCCGACGCCGACGCCGGCGCCGGAGCCGGTACCTCGTCTCCTCCGCGTTCGTCCAGGGAACAAGAAGAAGAACAAGGGGGCCTCACCTGAGAAGCAGCCGCCGGTGTACATGGTGTTGGCGCACGGAGTCGAGGAAGAGCCCACCACCCACTCCGTAATCGAGGTCGCCGCCTGCGCCGCCGCCCGCCGCCTGCTTAACACCGGCAGCGGCCGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGGGACACGCACCGTGGGCGTCGGCGTGGAGTTGACCACCGTCTACGACCCCGAGACATCCACGGAGCGCGGCGGCCCGCGACTCATCTTCCCCAAGGTGAACCCCGTCCTCATCTCGATCTCTGACGACGGCGGCGGTGTAGTCGGCGGCGGCACGCTCTACGCTCTCTCCCGCACCCCGGCCGTCGTGAGGCCGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACACCGTGTGGCGCGAACTCCCATCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTTCCTCGACCCGCCCAAGTTGCGCGTCGCGGCGTACGCCCTCGTCGGCTCCCACATCCTCCTGTCGGTCTCGGTGCAGCAGCTGCAGCCGCAGCAGCAGCAAGAAGACAAGGGCACCTGCGCCTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACAGCAACCTGCCTTTCGACGGCCAGGCCTTGCCTCTCGGCAGCGACGACGACCACCGCTTCGTCGCCGTCGCCTCCGCCGCCGCCGACGTTACGGTGTACCGCATGGTGGTCGGGATCTCGGCCGTCACGGGGAAGAAGGAGCTGACCATCGTTGCGTTGCGGGTGGTGGTGGCATCCAACTCCAAGTGCCGCATTGTTCCGGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCCGGTCCATTGCTGCTGCTTCCATGGGAAAGGTGGGCAGAGCACGTATTGTTCATCGCACTTACTCTCTGGTGGATGATGGTGAGGACGATTGGGTCGTCATGGTGAAGAAGCAGGATCGGCAGGTTTACAAGCTACGTGATCCATCCTTCTTGGGCGGTTGCTCTTTTTTCCATGTAAAAATTTCAGAGCCTTTCTTTGCTTCTTCCAACATCTTCTGATTCGTTGTCAGCGTCTATTATATCGCTGCTAAGGCCTTGTTTAGTTGGGAAAAAATTTTGGGTTTGGTTGTCACATCAGATATACCGACACACATTTAAGTATTAAACGTAGTCTAATAACAAAACAAATTACAGATTTCGCAGAGATGAATTTATTAAGCCTAATTAATCCGTCATTAGCAAATATTTACTGTAACACCATTGTCAAATCATGGTGCAATTAGGCTTAAAAGATTCGTCTAGCAATTTACACGCAATCTGTGTAATTGTTTCTTTTCCATACATTAAATGCTCCATGCATGTGTCCAAATATTCGATGTGACAGTGTAAAAAATTTTGTTTTGGAAACTAAACAGGGCCTAATTCATCAGCAGC]
consensusID : consensus_179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 898 fasta sequence
[GTATCTTATTAGGATAGAAAAACCCGTAGGATTTTAACCATATCCTAACTAACCGGCATTAGCCGATAAAATCAACCAACAGACACCGGCAGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGGGACACGCATCGTGGGCGTCGGTGTGGAGTTGACCACCGTCTACGACCCCGAGGCCTCCACGGAGCGCGGCGGCCCGCGACTCGTCTTCCCCAAGTTGAACCCCGTCCTCATCTCGATCTCGGACGACGGCGGCGGCGGCGGTGGCGGCGGCAAGCTCTACGCTCTCTCCCGCACCCCGGCCGTCGTGAGGCAGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACACCGTGTGGCGCCAGCTGCCGTCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTTCCTCGACCCGCCCAAGGTGCGCGTAACGGCGTACGCCCTCGTCGGCTCACACATCCTCCTCTCGGTGTCGGTGCGGCCGCCGCAGCAGCAGCAGCAAGATCACAAGGGCACATGCGCCTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACACCAACCTGCCTTTCGACGGCCAGGCCTTGCCTCTCGGCAGCGACGACCACCGCTTCGTCGCCGCCGCCGCCGACGTTGCGGTGTACCGCATGGTGGTGGGGATCTCGGCCGTCACGGGGAAGAAGGAGCTGACCATCGTTGAGCTGCGGGTGGTGGTGGCATCCAATTGCCGCATTGTTCCGGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCTGATCCATTGCTGCTGCTTCCGTGGGAAAGGTGGGCAAAGCACGTATCGTTCATCGCACTTACTCTTTGGTGGAGAATA]
[-] EMBL AK070991 [GTATCTTATTAGGATAGAAAAACCCGTAGGATTTTAACCATATCCTAACTAACCGGCATTAGCCGATAAAATCAACCAACAGACACCGGCAGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGGGACACGCATCGTGGGCGTCGGTGTGGAGTTGACCACCGTCTACGACCCCGAGGCCTCCACGGAGCGCGGCGGCCCGCGACTCGTCTTCCCCAAGTTGAACCCCGTCCTCATCTCGATCTCGGACGACGGCGGCGGCGGCGGTGGCGGCGGCAAGCTCTACGCTCTCTCCCGCACCCCGGCCGTCGTGAGGCAGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACACCGTGTGGCGCCAGCTGCCGTCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTTCCTCGACCCGCCCAAGGTGCGCGTAACGGCGTACGCCCTCGTCGGCTCACACATCCTCCTCTCGGTGTCGGTGCGGCCGCCGCAGCAGCAGCAGCAAGATCACAAGGGCACATGCGCCTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACACCAACCTGCCTTTCGACGGCCAGGCCTTGCCTCTCGGCAGCGACGACCACCGCTTCGTCGCCGCCGCCGCCGACGTTGCGGTGTACCGCATGGTGGTGGGGATCTCGGCCGTCACGGGGAAGAAGGAGCTGACCATCGTTGAGCTGCGGGTGGTGGTGGCATCCAATTGCCGCATTGTTCCGGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCTGATCCATTGCTGCTGCTTCCGTGGGAAAGGTGGGCAAAGCACGTATCGTTCATCGCACTTACTCTTTGGTGGAGAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_179#0 TCCGTTCGCATCTGGCGCACTGCCGCGATGTCATCGCTAAGTCCTGATGCCGTGTCGCCG 60
consensus_179#1 ------------------------------------------------------------
consensus_179#0 TCGCTACCTAGAACTGAGAAACTGGTGCTGGCTGTGACCCATCATTGGCCGGCCTGCCTG 120
consensus_179#1 ------------------------------------------------------------
consensus_179#0 CCGGAGTCCTTGTCGGCTGCAACGCCTGACGGCCTGATCGTCTACTCTAATCAGCAATCA 180
consensus_179#1 ------------------------------------------------------------
consensus_179#0 GGATAGCCCTGGTTCTGGAGAAGAGTAGACGGTGCGGTGGAGAGAAGGAGGAAGAGAAAA 240
consensus_179#1 ------------------------------------------------------------
consensus_179#0 AAGTTATGGTCTATACCTGTAATTTGGAGGGATGTCGTCCTCGTTTCTGTAGTAGTTGTA 300
consensus_179#1 ------------------------------------------------------------
consensus_179#0 GAAGTGAGCATGCTTAAAAACCAGAAAAAAGAACGCAGCAATGCTATCATTCGCCTGTTG 360
consensus_179#1 ------------------------------------------------------------
consensus_179#0 CACTCGCAATCGAACGTTCCAAAAAGAAAAAAAAAATCCTGATTGCGACGGGGAGTTTAG 420
consensus_179#1 ------------------------------------------------------------
consensus_179#0 TAGTAGGTGAGACGCATGTTGCACTGCCTTGGCGGCCCAGTCTCAAGTAGTGGAGTTGTA 480
consensus_179#1 ------------------------------------------------------------
consensus_179#0 ACATTTGGCCCAGTCTCGGCTAGGCCCATGCTGTCCTCCGGCCGACGAAAGCAACCCCAC 540
consensus_179#1 ------------------------------------------------------------
consensus_179#0 TGGGATAGGGTTTCCTTTCATCACGTCTTTGATACGTAAATCCGAATCCAGTCGAGGGAA 600
consensus_179#1 ------------------------------------------------------------
consensus_179#0 GAAGATGGTGACGCCGGACAAGAAGAGGAGGAAGAAACTCGCGGAGCCGGAGCCGACGCC 660
consensus_179#1 ------------------------------------------------------------
consensus_179#0 GACGCCGGCGCCGGAGCCGGTACCTCGTCTCCTCCGCGTTCGTCCAGGGAACAAGAAGAA 720
consensus_179#1 ------------------------------------------------------------
consensus_179#0 GAACAAGGGGGCCTCACCTGAGAAGCAGCCGCCGGTGTACATGGTGTTGGCGCACGGAGT 780
consensus_179#1 --------------------------------------GTATCTTATTAGGATAGAAAAA 22
** * ** * * *
consensus_179#0 CGAGGAAGAGCCCACCACCCACTCCGTAATCGAGGTCGCCGCCTGCGCCGCCGCCCGCCG 840
consensus_179#1 CCCGTAGGATTTTAAC---CATATCCTAACTAAC----CGGCATTAGCCGATAAAATCAA 75
* * * ** * * ** * *** * * ** * **** *
consensus_179#0 CCTGCTTAACACCGGCAGCGGCCGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGG 900
consensus_179#1 CC-----AACA--GACACCGGCAGCGGCCGCGGCCGCGGCATGTCGTTCGCCGCGGTGGG 128
** **** * ** **** *************************************
consensus_179#0 GACACGCACCGTGGGCGTCGGCGTGGAGTTGACCACCGTCTACGACCCCGAGACATCCAC 960
consensus_179#1 GACACGCATCGTGGGCGTCGGTGTGGAGTTGACCACCGTCTACGACCCCGAGGCCTCCAC 188
******** ************ ****************************** * *****
consensus_179#0 GGAGCGCGGCGGCCCGCGACTCATCTTCCCCAAGGTGAACCCCGTCCTCATCTCGATCTC 1020
consensus_179#1 GGAGCGCGGCGGCCCGCGACTCGTCTTCCCCAAGTTGAACCCCGTCCTCATCTCGATCTC 248
********************** *********** *************************
consensus_179#0 TGACGACGGCGGCGGTGTAGTCGGCGGCGGCACGCTCTACGCTCTCTCCCGCACCCCGGC 1080
consensus_179#1 GGACGACGGCGGCGGCGGCGGTGGCGGCGGCAAGCTCTACGCTCTCTCCCGCACCCCGGC 308
************** * * ********** ***************************
consensus_179#0 CGTCGTGAGGCCGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACAC 1140
consensus_179#1 CGTCGTGAGGCAGCTGGATTTCGAGCCATGGTTCTTCGTCCTCGACGACCTCAGCCACAC 368
*********** ************************************************
consensus_179#0 CGTGTGGCGCGAACTCCCATCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTT 1200
consensus_179#1 CGTGTGGCGCCAGCTGCCGTCGCCGCCGCTCTTCCCGTGCCGCCTCAACCCGCTGGAGTT 428
********** * ** ** *****************************************
consensus_179#0 CCTCGACCCGCCCAAGTTGCGCGTCGCGGCGTACGCCCTCGTCGGCTCCCACATCCTCCT 1260
consensus_179#1 CCTCGACCCGCCCAAGGTGCGCGTAACGGCGTACGCCCTCGTCGGCTCACACATCCTCCT 488
**************** ******* ********************** ***********
consensus_179#0 GTCGGTCTCGGTGCAGCAGCTGCAGCCGCAGCAGCAGCAAGAAGACAAGGGCACCTGCGC 1320
consensus_179#1 CTCGGTGTCGGTGCGGCCGCCGCAGC---AGCAGCAGCAAGATCACAAGGGCACATGCGC 545
***** ******* ** ** ***** ************* ********** *****
consensus_179#0 CTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACAGCAACCTGCCTTTCGACGG 1380
consensus_179#1 CTTCGACATGGACACCGAGCAGTGGGAGATGGTGCACGACACCAACCTGCCTTTCGACGG 605
***************************************** ******************
consensus_179#0 CCAGGCCTTGCCTCTCGGCAGCGACGACGACCACCGCTTCGTCGCCGTCGCCTCCGCCGC 1440
consensus_179#1 CCAGGCCTTGCCTCTCGGCAGCGACGAC---CACCGCTTCGTCGCCG---------CCGC 653
**************************** **************** ****
consensus_179#0 CGCCGACGTTACGGTGTACCGCATGGTGGTCGGGATCTCGGCCGTCACGGGGAAGAAGGA 1500
consensus_179#1 CGCCGACGTTGCGGTGTACCGCATGGTGGTGGGGATCTCGGCCGTCACGGGGAAGAAGGA 713
********** ******************* *****************************
consensus_179#0 GCTGACCATCGTTGCGTTGCGGGTGGTGGTGGCATCCAACTCCAAGTGCCGCATTGTTCC 1560
consensus_179#1 GCTGACCATCGTTGAGCTGCGGGTGGTGGTGGCATCCAATT------GCCGCATTGTTCC 767
************** * ********************** * *************
consensus_179#0 GGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCCGGTCCAT 1620
consensus_179#1 GGGCAACCTTCTGTGCGCCATGGGGAAGGGGAGCTTCGCTTCTTTCGAGTTCTGATCCAT 827
**************************************************** * *****
consensus_179#0 TGCTGCTGCTTCCATGGGAAAGGTGGGCAGAGCACGTATTGTTCATCGCACTTACTCTCT 1680
consensus_179#1 TGCTGCTGCTTCCGTGGGAAAGGTGGGCAAAGCACGTATCGTTCATCGCACTTACTCTTT 887
************* *************** ********* ****************** *
consensus_179#0 GGTGGATGATGGTGAGGACGATTGGGTCGTCATGGTGAAGAAGCAGGATCGGCAGGTTTA 1740
consensus_179#1 GGTGGAGAATA------------------------------------------------- 898
****** **
consensus_179#0 CAAGCTACGTGATCCATCCTTCTTGGGCGGTTGCTCTTTTTTCCATGTAAAAATTTCAGA 1800
consensus_179#1 ------------------------------------------------------------
consensus_179#0 GCCTTTCTTTGCTTCTTCCAACATCTTCTGATTCGTTGTCAGCGTCTATTATATCGCTGC 1860
consensus_179#1 ------------------------------------------------------------
consensus_179#0 TAAGGCCTTGTTTAGTTGGGAAAAAATTTTGGGTTTGGTTGTCACATCAGATATACCGAC 1920
consensus_179#1 ------------------------------------------------------------
consensus_179#0 ACACATTTAAGTATTAAACGTAGTCTAATAACAAAACAAATTACAGATTTCGCAGAGATG 1980
consensus_179#1 ------------------------------------------------------------
consensus_179#0 AATTTATTAAGCCTAATTAATCCGTCATTAGCAAATATTTACTGTAACACCATTGTCAAA 2040
consensus_179#1 ------------------------------------------------------------
consensus_179#0 TCATGGTGCAATTAGGCTTAAAAGATTCGTCTAGCAATTTACACGCAATCTGTGTAATTG 2100
consensus_179#1 ------------------------------------------------------------
consensus_179#0 TTTCTTTTCCATACATTAAATGCTCCATGCATGTGTCCAAATATTCGATGTGACAGTGTA 2160
consensus_179#1 ------------------------------------------------------------
consensus_179#0 AAAAATTTTGTTTTGGAAACTAAACAGGGCCTAATTCATCAGCAGC 2206
consensus_179#1 ----------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||