These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [ATNCCCTGGNTGTGTGCTAATTGCTGTGGGTTAANGTCTNTTTGGTGAATGGGACCCCTGAGTTACCGGGTTACTTTTCCTTGGAATGATATTTTATGTATACTCCCTCAGGGTGGTGTTTCTTTGTAGAGTGCGGTCCCCCTTGCCACCCGTATGCACAAACCTGCCAACAATTGTTCGTGTCCCACATAGTCGTACCACGAAAGGTCGTCCCCGTAACTCACAGTAGGGGATCGGAAACAATGGTGANCGTTGTTATGTCGTGGGTTACCCCCGTGTAGGCCACGTGCGTCGTGTGAAGGGGTATCACCTAGCCCGCAGAGGTGTGTCGTGCCCGTGTGGCCANTTTATGTGTAGAGCAACCCCAGTAGTTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATTTGTTGGGACCCTCGGTTGAAGTGGAATAAACCACGGAAGAAGAGGCTGTAGTAAAATGGGAACCCCCNTTGGTTCGGTTGGAAGTTGTGTAAATGGTGAACCCTTGATTGGTACCAAGCTGGCTTGGGTGGTTGGGTCGTCCATAGATGAGAGATTNTATATTCNATTATTGATAAAGGCTNTACCATTTTGCGAGCCCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCCCCCCTAAAAAAAAAAA] [+] EMBL BM038248 [ATNCCCTGGNTGTGTGCTAATTGCTGTGGGTTAANGTCTNTTTGGTGAATGGGACCCCTGAGTTACCGGGTTACTTTTCCTTGGAATGATATTTTATGTATACTCCCTCAGGGTGGTGTTTCTTTGTAGAGTGCGGTCCCCCTTGCCACCCGTATGCACAAACCTGCCAACAATTGTTCGTGTCCCACATAGTCGTACCACGAAAGGTCGTCCCCGTAACTCACAGTAGGGGATCGGAAACAATGGTGANCGTTGTTATGTCGTGGGTTACCCCCGTGTAGGCCACGTGCGTCGTGTGAAGGGGTATCACCTAGCCCGCAGAGGTGTGTCGTGCCCGTGTGGCCANTTTATGTGTAGAGCAACCCCAGTAGTTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATTTGTTGGGACCCTCGGTTGAAGTGGAATAAACCACGGAAGAAGAGGCTGTAGTAAAATGGGAACCCCCNTTGGTTCGGTTGGAAGTTGTGTAAATGGTGAACCCTTGATTGGTACCAAGCTGGCTTGGGTGGTTGGGTCGTCCATAGATGAGAGATTNTATATTCNATTATTGATAAAGGCTNTACCATTTTGCGAGCCCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCCCCCCTAAAAAAAAAAA] consensusID : consensus_1794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [CTGGGTAGCTTTGGATGGACCCGATCCGGTACTTCTTGAGAAATTATAATTCCACAGTTTTCGTTAAGTGCTCCCGGCCCGTACCAACCGTGCACATTCGTGCCATATCTACCAGAAGGCATTCCCAGNACCACAGAGGTACGACCATGNTGACGTTGGTATCTGGTTACCTTAGCCAGGTCTGGAGGTGACCACCACGCCCAAGTTTGCGCCCTTGGCACTTATTGAAGCACACCCCATAGTGTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATGTTGTTGGACCCTTGTTAAGTGGAATAAACCACGGAAGAAGAGCTTGTAAAATGGGAACCACGTTGTGTTGGNTGAGTTGTGGTAAATGTAACCCTGTGATTGTACCACGCCGGCTTGGGTGTTGGTNTCATAGATGAGAGATTCTATANNCCAATTATTGATAAAGGCTCTCCCATTTNGCGACCCCAAAAAAAAAA] [+] EMBL BM420467 [CTGGGTAGCTTTGGATGGACCCGATCCGGTACTTCTTGAGAAATTATAATTCCACAGTTTTCGTTAAGTGCTCCCGGCCCGTACCAACCGTGCACATTCGTGCCATATCTACCAGAAGGCATTCCCAGNACCACAGAGGTACGACCATGNTGACGTTGGTATCTGGTTACCTTAGCCAGGTCTGGAGGTGACCACCACGCCCAAGTTTGCGCCCTTGGCACTTATTGAAGCACACCCCATAGTGTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATGTTGTTGGACCCTTGTTAAGTGGAATAAACCACGGAAGAAGAGCTTGTAAAATGGGAACCACGTTGTGTTGGNTGAGTTGTGGTAAATGTAACCCTGTGATTGTACCACGCCGGCTTGGGTGTTGGTNTCATAGATGAGAGATTCTATANNCCAATTATTGATAAAGGCTCTCCCATTTNGCGACCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1794#0 ATNCCCTGGNTGTGTGCTAATTGCTGTGGGTTAANGTCTNTTTGGTGAATGGGACCCCTG 60 consensus_1794#1 ------------------------------------------------------------ consensus_1794#0 AGTTACCGGGTTACTTTTCCTTGGAATGATATTTTATGTATACTCCCTCAGGGTGGTGTT 120 consensus_1794#1 ------------------------------------------------CTGGGTAGCTTT 12 * **** * ** consensus_1794#0 TCTTTG-TAGAGTGCGGTCCCCCTTGCCAC-CCGTATGCACAAACCTGCCAACAATTGTT 178 consensus_1794#1 GGATGGACCCGATCCGGTACTTCTTGAGAAATTATAATTCCACAGTTTTCGTTAAGTGCT 72 * * * **** * **** * ** ** * * * ** ** * consensus_1794#0 CGTGTCCCACATAGTCGTACCACGAAAGGTCGTCCCCGTAACTCACAGTAGGGGATCGGA 238 consensus_1794#1 CCCGGCCCGTA----CCAACCGTGCACATTCGTGCC-ATATCTACCAGAAGGCATTCCCA 127 * * *** * * *** * * **** ** ** ** *** *** ** * consensus_1794#0 -AACAATGGTGANCGTTGTTATGTCGTGGGTTACCCCCGTGTAGGCCACGTGCGTCGTGT 297 consensus_1794#1 GNACCACAGAG-GTACGACCATGNTGACGTTGGTATCTGGTTACCTTAGCCAGGTC---T 183 ** * * * *** * * * * * ** * *** * consensus_1794#0 GAAGGGGTATCACCTAGCCCGCAGAGGTGTGTCGTGCCCGTGTGGCCANTTTATGTGTAG 357 consensus_1794#1 GGAGGTG-ACCACCACGCCC----AAGT---TTGCGCCCTTG--GC--ACTTAT---TGA 228 * *** * * **** **** * ** * * **** ** ** **** * consensus_1794#0 AGCAACCCCAGTAGT-TGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATTTGTT 416 consensus_1794#1 AGCACACCCCATAGTGTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATGTTGT 288 **** *** **** *************************************** * * consensus_1794#0 GGGACCCTCGGTTGAAGTGGAATAAACCACGGAAGAAGAGGCTGTAGTAAAATGGGAACC 476 consensus_1794#1 TGGACCCTTGTT--AAGTGGAATAAACCACGGAAGAAGAGCTTGTA---AAATGGGAACC 343 ******* * * ************************** **** *********** consensus_1794#0 CCCNTTGGTTCGGTTGGAAGTTGTGTAAATGGTGAACCCTTGATTGGTACCAAGCTGGCT 536 consensus_1794#1 AC-GTTGTGTTGGNTG--AGTTGTGGTAAATGTAACCCTGTGATTG-TACCACGCCGGCT 399 * *** * ** ** ******* ** ** * ** ****** ***** ** **** consensus_1794#0 TGGGTGGTTGGGTCGTCCATAGATGAGAGATTNTATATTCNA-TTATTGATAAAGGCTNT 595 consensus_1794#1 TGGGTGTTGGTNTC----ATAGATGAGAGATTCTATANNCCAATTATTGATAAAGGCTCT 455 ****** * * ** ************** **** * * *************** * consensus_1794#0 ACCATTTTGCGAGCCCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCCCCCCTAAAAAAA 655 consensus_1794#1 CCCATTTNGCGACCCCAAAAAAAAAA---------------------------------- 481 ****** **** ************* consensus_1794#0 AAAA 659 consensus_1794#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||