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Oryza sativa
cluster # 1794 cluster # 1794       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1794#0 length = 659 sequences # 1  
consensus_1794#1 length = 481 sequences # 1  

consensusID : consensus_1794#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence
                              [ATNCCCTGGNTGTGTGCTAATTGCTGTGGGTTAANGTCTNTTTGGTGAATGGGACCCCTGAGTTACCGGGTTACTTTTCCTTGGAATGATATTTTATGTATACTCCCTCAGGGTGGTGTTTCTTTGTAGAGTGCGGTCCCCCTTGCCACCCGTATGCACAAACCTGCCAACAATTGTTCGTGTCCCACATAGTCGTACCACGAAAGGTCGTCCCCGTAACTCACAGTAGGGGATCGGAAACAATGGTGANCGTTGTTATGTCGTGGGTTACCCCCGTGTAGGCCACGTGCGTCGTGTGAAGGGGTATCACCTAGCCCGCAGAGGTGTGTCGTGCCCGTGTGGCCANTTTATGTGTAGAGCAACCCCAGTAGTTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATTTGTTGGGACCCTCGGTTGAAGTGGAATAAACCACGGAAGAAGAGGCTGTAGTAAAATGGGAACCCCCNTTGGTTCGGTTGGAAGTTGTGTAAATGGTGAACCCTTGATTGGTACCAAGCTGGCTTGGGTGGTTGGGTCGTCCATAGATGAGAGATTNTATATTCNATTATTGATAAAGGCTNTACCATTTTGCGAGCCCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCCCCCCTAAAAAAAAAAA]

[+] EMBL BM038248             [ATNCCCTGGNTGTGTGCTAATTGCTGTGGGTTAANGTCTNTTTGGTGAATGGGACCCCTGAGTTACCGGGTTACTTTTCCTTGGAATGATATTTTATGTATACTCCCTCAGGGTGGTGTTTCTTTGTAGAGTGCGGTCCCCCTTGCCACCCGTATGCACAAACCTGCCAACAATTGTTCGTGTCCCACATAGTCGTACCACGAAAGGTCGTCCCCGTAACTCACAGTAGGGGATCGGAAACAATGGTGANCGTTGTTATGTCGTGGGTTACCCCCGTGTAGGCCACGTGCGTCGTGTGAAGGGGTATCACCTAGCCCGCAGAGGTGTGTCGTGCCCGTGTGGCCANTTTATGTGTAGAGCAACCCCAGTAGTTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATTTGTTGGGACCCTCGGTTGAAGTGGAATAAACCACGGAAGAAGAGGCTGTAGTAAAATGGGAACCCCCNTTGGTTCGGTTGGAAGTTGTGTAAATGGTGAACCCTTGATTGGTACCAAGCTGGCTTGGGTGGTTGGGTCGTCCATAGATGAGAGATTNTATATTCNATTATTGATAAAGGCTNTACCATTTTGCGAGCCCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCCCCCCTAAAAAAAAAAA]


>consensus_1794#0 ATNCCCTGGNTGTGTGCTAATTGCTGTGGGTTAANGTCTNTTTGGTGAATGGGACCCCTG AGTTACCGGGTTACTTTTCCTTGGAATGATATTTTATGTATACTCCCTCAGGGTGGTGTT TCTTTGTAGAGTGCGGTCCCCCTTGCCACCCGTATGCACAAACCTGCCAACAATTGTTCG TGTCCCACATAGTCGTACCACGAAAGGTCGTCCCCGTAACTCACAGTAGGGGATCGGAAA CAATGGTGANCGTTGTTATGTCGTGGGTTACCCCCGTGTAGGCCACGTGCGTCGTGTGAA GGGGTATCACCTAGCCCGCAGAGGTGTGTCGTGCCCGTGTGGCCANTTTATGTGTAGAGC AACCCCAGTAGTTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATTTGTTGGGA CCCTCGGTTGAAGTGGAATAAACCACGGAAGAAGAGGCTGTAGTAAAATGGGAACCCCCN TTGGTTCGGTTGGAAGTTGTGTAAATGGTGAACCCTTGATTGGTACCAAGCTGGCTTGGG TGGTTGGGTCGTCCATAGATGAGAGATTNTATATTCNATTATTGATAAAGGCTNTACCAT TTTGCGAGCCCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCCCCCCTAAAAAAAAAAA



consensusID : consensus_1794#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence
                              [CTGGGTAGCTTTGGATGGACCCGATCCGGTACTTCTTGAGAAATTATAATTCCACAGTTTTCGTTAAGTGCTCCCGGCCCGTACCAACCGTGCACATTCGTGCCATATCTACCAGAAGGCATTCCCAGNACCACAGAGGTACGACCATGNTGACGTTGGTATCTGGTTACCTTAGCCAGGTCTGGAGGTGACCACCACGCCCAAGTTTGCGCCCTTGGCACTTATTGAAGCACACCCCATAGTGTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATGTTGTTGGACCCTTGTTAAGTGGAATAAACCACGGAAGAAGAGCTTGTAAAATGGGAACCACGTTGTGTTGGNTGAGTTGTGGTAAATGTAACCCTGTGATTGTACCACGCCGGCTTGGGTGTTGGTNTCATAGATGAGAGATTCTATANNCCAATTATTGATAAAGGCTCTCCCATTTNGCGACCCCAAAAAAAAAA]

[+] EMBL BM420467             [CTGGGTAGCTTTGGATGGACCCGATCCGGTACTTCTTGAGAAATTATAATTCCACAGTTTTCGTTAAGTGCTCCCGGCCCGTACCAACCGTGCACATTCGTGCCATATCTACCAGAAGGCATTCCCAGNACCACAGAGGTACGACCATGNTGACGTTGGTATCTGGTTACCTTAGCCAGGTCTGGAGGTGACCACCACGCCCAAGTTTGCGCCCTTGGCACTTATTGAAGCACACCCCATAGTGTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATGTTGTTGGACCCTTGTTAAGTGGAATAAACCACGGAAGAAGAGCTTGTAAAATGGGAACCACGTTGTGTTGGNTGAGTTGTGGTAAATGTAACCCTGTGATTGTACCACGCCGGCTTGGGTGTTGGTNTCATAGATGAGAGATTCTATANNCCAATTATTGATAAAGGCTCTCCCATTTNGCGACCCCAAAAAAAAAA]


>consensus_1794#1 CTGGGTAGCTTTGGATGGACCCGATCCGGTACTTCTTGAGAAATTATAATTCCACAGTTT TCGTTAAGTGCTCCCGGCCCGTACCAACCGTGCACATTCGTGCCATATCTACCAGAAGGC ATTCCCAGNACCACAGAGGTACGACCATGNTGACGTTGGTATCTGGTTACCTTAGCCAGG TCTGGAGGTGACCACCACGCCCAAGTTTGCGCCCTTGGCACTTATTGAAGCACACCCCAT AGTGTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATGTTGTTGGACCCTTGTT AAGTGGAATAAACCACGGAAGAAGAGCTTGTAAAATGGGAACCACGTTGTGTTGGNTGAG TTGTGGTAAATGTAACCCTGTGATTGTACCACGCCGGCTTGGGTGTTGGTNTCATAGATG AGAGATTCTATANNCCAATTATTGATAAAGGCTCTCCCATTTNGCGACCCCAAAAAAAAA A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1794#0      ATNCCCTGGNTGTGTGCTAATTGCTGTGGGTTAANGTCTNTTTGGTGAATGGGACCCCTG 60
consensus_1794#1      ------------------------------------------------------------
                                                                                  

consensus_1794#0      AGTTACCGGGTTACTTTTCCTTGGAATGATATTTTATGTATACTCCCTCAGGGTGGTGTT 120
consensus_1794#1      ------------------------------------------------CTGGGTAGCTTT 12
                                                                      * **** *  **

consensus_1794#0      TCTTTG-TAGAGTGCGGTCCCCCTTGCCAC-CCGTATGCACAAACCTGCCAACAATTGTT 178
consensus_1794#1      GGATGGACCCGATCCGGTACTTCTTGAGAAATTATAATTCCACAGTTTTCGTTAAGTGCT 72
                         * *      * **** *  ****  *     **    ** *  *  *   ** ** *

consensus_1794#0      CGTGTCCCACATAGTCGTACCACGAAAGGTCGTCCCCGTAACTCACAGTAGGGGATCGGA 238
consensus_1794#1      CCCGGCCCGTA----CCAACCGTGCACATTCGTGCC-ATATCTACCAGAAGGCATTCCCA 127
                      *  * ***  *    *  ***  * *   **** **  ** **  *** ***   **  *

consensus_1794#0      -AACAATGGTGANCGTTGTTATGTCGTGGGTTACCCCCGTGTAGGCCACGTGCGTCGTGT 297
consensus_1794#1      GNACCACAGAG-GTACGACCATGNTGACGTTGGTATCTGGTTACCTTAGCCAGGTC---T 183
                        ** *  * *         ***  *  * *     * *  **    *     ***   *

consensus_1794#0      GAAGGGGTATCACCTAGCCCGCAGAGGTGTGTCGTGCCCGTGTGGCCANTTTATGTGTAG 357
consensus_1794#1      GGAGGTG-ACCACCACGCCC----AAGT---TTGCGCCCTTG--GC--ACTTAT---TGA 228
                      * *** * * ****  ****    * **   * * **** **  **    ****   *  

consensus_1794#0      AGCAACCCCAGTAGT-TGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATTTGTT 416
consensus_1794#1      AGCACACCCCATAGTGTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATGTTGT 288
                      ****  ***  **** *************************************** *  *

consensus_1794#0      GGGACCCTCGGTTGAAGTGGAATAAACCACGGAAGAAGAGGCTGTAGTAAAATGGGAACC 476
consensus_1794#1      TGGACCCTTGTT--AAGTGGAATAAACCACGGAAGAAGAGCTTGTA---AAATGGGAACC 343
                       ******* * *  **************************  ****   ***********

consensus_1794#0      CCCNTTGGTTCGGTTGGAAGTTGTGTAAATGGTGAACCCTTGATTGGTACCAAGCTGGCT 536
consensus_1794#1      AC-GTTGTGTTGGNTG--AGTTGTGGTAAATGTAACCCTGTGATTG-TACCACGCCGGCT 399
                       *  ***  * ** **  *******  **  ** * **  ****** ***** ** ****

consensus_1794#0      TGGGTGGTTGGGTCGTCCATAGATGAGAGATTNTATATTCNA-TTATTGATAAAGGCTNT 595
consensus_1794#1      TGGGTGTTGGTNTC----ATAGATGAGAGATTCTATANNCCAATTATTGATAAAGGCTCT 455
                      ****** * *  **    ************** ****  * * *************** *

consensus_1794#0      ACCATTTTGCGAGCCCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCCCCCCTAAAAAAA 655
consensus_1794#1      CCCATTTNGCGACCCCAAAAAAAAAA---------------------------------- 481
                       ****** **** *************                                  

consensus_1794#0      AAAA 659
consensus_1794#1      ----
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)