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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1808#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2080 fasta sequence
[GACCGGGCTAGAACGATTTTTCACCATCTTTATCTGGTCGGTTTCATGATAAAACTGTGAAAAGTTGTGTCTTCTTCCAAAGCTGTGTGGGTATGGAAGGGTTTGTACGAGGAGAGCGCATGGAGGGTTTGGGGGAAAGAAGAAAAGATTCACGCCTTCTTTTGCCGCGGCGATGGGGTTTTGGGCCGTGGGCGGATGCGGCCGAGAGAGAGAGACCTCCCGCGCGGCGGCCGAGAGCAGCCGAGGCAGGGGGGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACTACTCCATTTCTGTTCCCCCTCCCTGATCAAGTAAACTAGTTTGTAGGATCGCATCAACTCGGATGAGGAATTTTTGCCGATTAGATTTAGTTTTCAAGCTGGAAATATGGTGATTCACGGGCCTTTTTCTTGTGGTGGTTGTCGTTGTTGTTCATGCCATTTTTCTGAAGTGAAAGATGAACAAAAATTTCCACTGAAAAGTAATATTTTGACACTGCAGGTTTGTTGAAAAACGATGGGCACATCGTGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAGATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTTGATCAAATTGGCCGCGAGAAAGCATGTTCTGCTGTTGTGGATGATTCTCAGAATCCTAATGTGCAAGAAAGGCGTGTAGATGCTACTGAAACATTGAACAGTTCGCGCGCTCATTCTCAGCCCATGCCAATGCAGTCAACTACTGAAACTGTGAACCATTCACATGCTCGTCCTTGTCCCATGCATACTGCTGTTGATTGCATGCCCCTTTCTCATGCTCATCCTCAACCCATGCCGATGCAATTCCCTACCGAAACTGTGAACCATTGTCATGCTCCTACTGGTCCCATGGAAATGCCACTTGAAAACGTTGCCCTTTCTCATGCTCATGCTAGGCCCTTGCAAATGCAGTCACAACCAACGGATAGATTGACACAGGTGCAAAGAGGTAACTCAAGTAAAGGCAACATGACCACGATGAGTTCCTCCTCCATGTCATCTGGTTACAACTCAATTATTATATGCATTTCCTGATAAAGCACATCTGATGTTTTCTTTTCTTTGCACACAGGATATTCTTTGTCCTCTAAAGATCAGGATTGCAGAGTAGGTGTTATACCTGATCCCATCATCGGGCAAAAGACCATACTAAGTCGAGTTCAGGTGAATGTGGTGAAGCGCAAGATCCAAAATATTGGTTCTCAAATTCCAATCTTTGTATCTGTCATTGGAAAGAACAACGCCTCTGGAAGAATATCCTCTCTAAGTATCGCCAACCGATATGTTGATAATTACCTTCAAGACGAGAAAACTATCCGTCTTTCGCGTCTTGGGGACAAGTGGAACATCAGGCTTTCTGATTCGAGTGGTAACAGAAGGATGGTTGGTGGATGCCGAAAGTTTGCGGAAGACAATGATGTTGGAGTGGGTGATATCTGCCTGTTCGAGCTGTTGAAGAATCATAAATGCACAATGAAAGTTCATATCATCAGGGCAAAGGATATCTGTTAATCGAAAAGCCTGTTGAATCTGCTGATTTCTCTGATGACTGTTGCTGGTGCTTTTGTGCTGCTGAGAATGGTAGTCTATCCACAGTTTATGCAACTACTGGTACTAAGTTGTTATTGAACTAGTACATTGCATGCTGATTAGATGGTGATTTCCCTTGCTAATTCTCTTTTTTTGGGTGATACACTAGGGGGGTTCCCTTGCTAATTAATGACCCATGTAATTACTGATACTTACTTTTGGTGCAATGCTTTTGTA]
[+] EMBL AK068359 [GACCGGGCTAGAACGATTTTTCACCATCTTTATCTGGTCGGTTTCATGATAAAACTGTGAAAAGTTGTGTCTTCTTCCAAAGCTGTGTGGGTATGGAAGGGTTTGTACGAGGAGAGCGCATGGAGGGTTTGGGGGAAAGAAGAAAAGATTCACGCCTTCTTTTGCCGCGGCGATGGGGTTTTGGGCCGTGGGCGGATGCGGCCGAGAGAGAGAGACCTCCCGCGCGGCGGCCGAGAGCAGCCGAGGCAGGGGGGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACTACTCCATTTCTGTTCCCCCTCCCTGATCAAGTAAACTAGTTTGTAGGATCGCATCAACTCGGATGAGGAATTTTTGCCGATTAGATTTAGTTTTCAAGCTGGAAATATGGTGATTCACGGGCCTTTTTCTTGTGGTGGTTGTCGTTGTTGTTCATGCCATTTTTCTGAAGTGAAAGATGAACAAAAATTTCCACTGAAAAGTAATATTTTGACACTGCAGGTTTGTTGAAAAACGATGGGCACATCGTGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAGATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTTGATCAAATTGGCCGCGAGAAAGCATGTTCTGCTGTTGTGGATGATTCTCAGAATCCTAATGTGCAAGAAAGGCGTGTAGATGCTACTGAAACATTGAACAGTTCGCGCGCTCATTCTCAGCCCATGCCAATGCAGTCAACTACTGAAACTGTGAACCATTCACATGCTCGTCCTTGTCCCATGCATACTGCTGTTGATTGCATGCCCCTTTCTCATGCTCATCCTCAACCCATGCCGATGCAATTCCCTACCGAAACTGTGAACCATTGTCATGCTCCTACTGGTCCCATGGAAATGCCACTTGAAAACGTTGCCCTTTCTCATGCTCATGCTAGGCCCTTGCAAATGCAGTCACAACCAACGGATAGATTGACACAGGTGCAAAGAGGTAACTCAAGTAAAGGCAACATGACCACGATGAGTTCCTCCTCCATGTCATCTGGTTACAACTCAATTATTATATGCATTTCCTGATAAAGCACATCTGATGTTTTCTTTTCTTTGCACACAGGATATTCTTTGTCCTCTAAAGATCAGGATTGCAGAGTAGGTGTTATACCTGATCCCATCATCGGGCAAAAGACCATACTAAGTCGAGTTCAGGTGAATGTGGTGAAGCGCAAGATCCAAAATATTGGTTCTCAAATTCCAATCTTTGTATCTGTCATTGGAAAGAACAACGCCTCTGGAAGAATATCCTCTCTAAGTATCGCCAACCGATATGTTGATAATTACCTTCAAGACGAGAAAACTATCCGTCTTTCGCGTCTTGGGGACAAGTGGAACATCAGGCTTTCTGATTCGAGTGGTAACAGAAGGATGGTTGGTGGATGCCGAAAGTTTGCGGAAGACAATGATGTTGGAGTGGGTGATATCTGCCTGTTCGAGCTGTTGAAGAATCATAAATGCACAATGAAAGTTCATATCATCAGGGCAAAGGATATCTGTTAATCGAAAAGCCTGTTGAATCTGCTGATTTCTCTGATGACTGTTGCTGGTGCTTTTGTGCTGCTGAGAATGGTAGTCTATCCACAGTTTATGCAACTACTGGTACTAAGTTGTTATTGAACTAGTACATTGCATGCTGATTAGATGGTGATTTCCCTTGCTAATTCTCTTTTTTTGGGTGATACACTAGGGGGGTTCCCTTGCTAATTAATGACCCATGTAATTACTGATACTTACTTTTGGTGCAATGCTTTTGTA]
consensusID : consensus_1808#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[GGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACTACTCCATTTCTGTTCCCCCTCCCTGATCAAACAAACTACTCCGTACGATCGCATCAACTCGAATGAGGAATCTACGCCGACTACATTAACCTTTAAACCTGGGACATCCGGGGATCAAAAGGCCTTCTACTCGTGGTGGGCGACCAATGAACGATCATGCCATATTCATGGACTCAACGATCAACAAAAACTCCCAATGCCAAGGACTCCACCGACCCTGCAGGTACGGAGAAAAACGACGGGCACATCGCGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCACATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTT]
[+] EMBL CF306653 [GGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACTACTCCATTTCTGTTCCCCCTCCCTGATCAAACAAACTACTCCGTACGATCGCATCAACTCGAATGAGGAATCTACGCCGACTACATTAACCTTTAAACCTGGGACATCCGGGGATCAAAAGGCCTTCTACTCGTGGTGGGCGACCAATGAACGATCATGCCATATTCATGGACTCAACGATCAACAAAAACTCCCAATGCCAAGGACTCCACCGACCCTGCAGGTACGGAGAAAAACGACGGGCACATCGCGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCACATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1808#0 GACCGGGCTAGAACGATTTTTCACCATCTTTATCTGGTCGGTTTCATGATAAAACTGTGA 60
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 AAAGTTGTGTCTTCTTCCAAAGCTGTGTGGGTATGGAAGGGTTTGTACGAGGAGAGCGCA 120
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 TGGAGGGTTTGGGGGAAAGAAGAAAAGATTCACGCCTTCTTTTGCCGCGGCGATGGGGTT 180
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 TTGGGCCGTGGGCGGATGCGGCCGAGAGAGAGAGACCTCCCGCGCGGCGGCCGAGAGCAG 240
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 CCGAGGCAGGGGGGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACT 300
consensus_1808#1 ------------GGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACT 48
************************************************
consensus_1808#0 ACTCCATTTCTGTTCCCCCTCCCTGATCAAGTAAACTAGTTTGTAGGATCGCATCAACTC 360
consensus_1808#1 ACTCCATTTCTGTTCCCCCTCCCTGATCAAACAAACTACTCCGTACGATCGCATCAACTC 108
****************************** ****** * *** **************
consensus_1808#0 GGATGAGGAATTTTTGCCGATTAGATTTAGTTTTCAAGCTGGAA-ATATGGTGATTCACG 419
consensus_1808#1 GAATGAGGAATCTACGCCGACTACATTAACCTTTAAACCTGGGACATCCGGGGATCAAAA 168
* ********* * ***** ** *** * *** ** **** * ** ** *** *
consensus_1808#0 GGCCTTTTTCTTGTGGTGGTTGTC--GTTGTTGTTCATGCCATTTTTCTGAAGTGAAAGA 477
consensus_1808#1 GGCCTTCTACTCGTGGTGGGCGACCAATGAACGATCATGCCATATTCATGGACTCAACGA 228
****** * ** ******* * * * * ********* ** ** * * ** **
consensus_1808#0 TGAACAAAAATTTCCACTGAAAAGTAATATTTTGACACTGCAGGTTTGTTGAAAAACGAT 537
consensus_1808#1 TCAACAAAAACTCCCAATGCCAAGGACTCCACCGACCCTGCAGGTACGGAGAAAAACGAC 288
* ******** * *** ** *** * * *** ******** * *********
consensus_1808#0 GGGCACATCGTGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGA 597
consensus_1808#1 GGGCACATCGCGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGA 348
********** *************************************************
consensus_1808#0 TTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCC 657
consensus_1808#1 TTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCC 408
************************************************************
consensus_1808#0 AAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACG 717
consensus_1808#1 AAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACG 468
************************************************************
consensus_1808#0 TAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGA 777
consensus_1808#1 TAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGA 528
************************************************************
consensus_1808#0 GGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAG 837
consensus_1808#1 GGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAC 588
***********************************************************
consensus_1808#0 ATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTTGATCAAATTGGCCGCGAGAAAGC 897
consensus_1808#1 ATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTT----------------------- 625
*************************************
consensus_1808#0 ATGTTCTGCTGTTGTGGATGATTCTCAGAATCCTAATGTGCAAGAAAGGCGTGTAGATGC 957
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 TACTGAAACATTGAACAGTTCGCGCGCTCATTCTCAGCCCATGCCAATGCAGTCAACTAC 1017
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 TGAAACTGTGAACCATTCACATGCTCGTCCTTGTCCCATGCATACTGCTGTTGATTGCAT 1077
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 GCCCCTTTCTCATGCTCATCCTCAACCCATGCCGATGCAATTCCCTACCGAAACTGTGAA 1137
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 CCATTGTCATGCTCCTACTGGTCCCATGGAAATGCCACTTGAAAACGTTGCCCTTTCTCA 1197
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 TGCTCATGCTAGGCCCTTGCAAATGCAGTCACAACCAACGGATAGATTGACACAGGTGCA 1257
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 AAGAGGTAACTCAAGTAAAGGCAACATGACCACGATGAGTTCCTCCTCCATGTCATCTGG 1317
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 TTACAACTCAATTATTATATGCATTTCCTGATAAAGCACATCTGATGTTTTCTTTTCTTT 1377
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 GCACACAGGATATTCTTTGTCCTCTAAAGATCAGGATTGCAGAGTAGGTGTTATACCTGA 1437
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 TCCCATCATCGGGCAAAAGACCATACTAAGTCGAGTTCAGGTGAATGTGGTGAAGCGCAA 1497
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 GATCCAAAATATTGGTTCTCAAATTCCAATCTTTGTATCTGTCATTGGAAAGAACAACGC 1557
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 CTCTGGAAGAATATCCTCTCTAAGTATCGCCAACCGATATGTTGATAATTACCTTCAAGA 1617
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 CGAGAAAACTATCCGTCTTTCGCGTCTTGGGGACAAGTGGAACATCAGGCTTTCTGATTC 1677
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 GAGTGGTAACAGAAGGATGGTTGGTGGATGCCGAAAGTTTGCGGAAGACAATGATGTTGG 1737
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 AGTGGGTGATATCTGCCTGTTCGAGCTGTTGAAGAATCATAAATGCACAATGAAAGTTCA 1797
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 TATCATCAGGGCAAAGGATATCTGTTAATCGAAAAGCCTGTTGAATCTGCTGATTTCTCT 1857
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 GATGACTGTTGCTGGTGCTTTTGTGCTGCTGAGAATGGTAGTCTATCCACAGTTTATGCA 1917
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 ACTACTGGTACTAAGTTGTTATTGAACTAGTACATTGCATGCTGATTAGATGGTGATTTC 1977
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 CCTTGCTAATTCTCTTTTTTTGGGTGATACACTAGGGGGGTTCCCTTGCTAATTAATGAC 2037
consensus_1808#1 ------------------------------------------------------------
consensus_1808#0 CCATGTAATTACTGATACTTACTTTTGGTGCAATGCTTTTGTA 2080
consensus_1808#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||