These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [ACATTATTCTCCCAAAATTCGTTTGTCACGGGGCAAGCTTCACGCGTGCTGGCGCCGGCAGTCGTCGTAGCCGAGCCACCGCCACCGCCGGCCGTCGTCCTCGTCGACGAGCGAACGTCGCCCCTCCGCAGCTACCGCCAAGCCGCCACCGGTGGTCCTCCTCGTCACCGAGCCAACGCCGCCCGTCGTCGCCAGCGGCAGCCCTCCTCGTCGTCGAGCAGCTGCCCCTCCACCGCCGCTCCTCCGCATCCACCGCCAGCGGCGACCCTCCGCGTCGCGCCGCCAAGCCGCCGCTCCTCCGCAGCCGCAGCTACCGCCGGCCCTCCTCGTCGCCGAGTC] [+] EMBL AK062331 [ACATTATTCTCCCAAAATTCGTTTGTCACGGGGCAAGCTTCACGCGTGCTGGCGCCGGCAGTCGTCGTAGCCGAGCCACCGCCACCGCCGGCCGTCGTCCTCGTCGACGAGCGAACGTCGCCCCTCCGCAGCTACCGCCAAGCCGCCACCGGTGGTCCTCCTCGTCACCGAGCCAACGCCGCCCGTCGTCGCCAGCGGCAGCCCTCCTCGTCGTCGAGCAGCTGCCCCTCCACCGCCGCTCCTCCGCATCCACCGCCAGCGGCGACCCTCCGCGTCGCGCCGCCAAGCCGCCGCTCCTCCGCAGCCGCAGCTACCGCCGGCCCTCCTCGTCGCCGAGTC] consensusID : consensus_1812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [CGGCCGTCCTCCTCGTCGACGAGCCGACGTCGCCCCTCTGCAGCTACCGCCGAGCCAGCGCCGCCGTCGTCGGTCGTCTTCCTCGTCGCCGAGCCGACACCGCCCCTCCGCAGCTGCAGCCACCGCTCGTTCGCCGCCAGCGGCCGCCCTCCTCGTCACCGAGCCAACGCCGCCCGTCGTCGCCAGCGGTAGCCCTCCTCGTCGCCGAGCCGCCGCCTCTCCTCCTCCGCCGGCAGCGGCGGCCTTCCTCGTCGCCGAGCGGCCGCTGCCCCTCC] [+] EMBL AK111032 [CGGCCGTCCTCCTCGTCGACGAGCCGACGTCGCCCCTCTGCAGCTACCGCCGAGCCAGCGCCGCCGTCGTCGGTCGTCTTCCTCGTCGCCGAGCCGACACCGCCCCTCCGCAGCTGCAGCCACCGCTCGTTCGCCGCCAGCGGCCGCCCTCCTCGTCACCGAGCCAACGCCGCCCGTCGTCGCCAGCGGTAGCCCTCCTCGTCGCCGAGCCGCCGCCTCTCCTCCTCCGCCGGCAGCGGCGGCCTTCCTCGTCGCCGAGCGGCCGCTGCCCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1812#0 ACATTATTCTCCCAAAATTCGTTTGTCACGGGGCAAGCTTCACGCGTGCTGGCGCCGGCA 60 consensus_1812#1 --------CGGCCGTCCTCC--TCGTCGACGAGCCGACGTCGCCCCT-CTG----CAGCT 45 * ** * * * *** * ** * ** * * * *** * ** consensus_1812#0 GTCGTCGTAGCCGAGCCACCGCCACCGCCGGCCGTCGTCCTCGTCGACGAGCGAACGTCG 120 consensus_1812#1 ACCGCCG-AGCCAG--CGCCGCCGTCGTCGGTCGTCTTCCTCGTCGCCGAGCCGACACCG 102 ** ** **** * ***** ** *** **** ********* ***** ** ** consensus_1812#0 CCCCTCCGCAGCTACCGCCAA---------GCCGCCACCGGTGGTCCTCCTCGTCACCGA 171 consensus_1812#1 CCCCTCCGCAGCTGCAGCCACCGCTCGTTCGCCGCCAGCGGCCGCCCTCCTCGTCACCGA 162 ************* * **** ******* *** * *************** consensus_1812#0 GCCAACGCCGCCCGTCGTCGCCAGCGGCAGCCCTCCTCGTCGTCGAGCAGCTGCCCCTCC 231 consensus_1812#1 GCCAACGCCGCCCGTCGTCGCCAGCGGTAGCCCTCCTCGTCGCCGAG------------- 209 *************************** ************** **** consensus_1812#0 ACCGCCGCTCCTCCGCATCCACCGCCAGCGGCGACCCTCCGCGTCGCGCCGCCAAGCCGC 291 consensus_1812#1 -CCGCCGCCTCTCCTCCTCCGCCGGCAGCGGCGGCCTTCCTCGTCGC--CGAGCGGCCGC 266 ******* **** * *** *** ******** ** *** ****** ** ***** consensus_1812#0 CGCTCCTCCGCAGCCGCAGCTACCGCCGGCCCTCCTCGTCGCCGAGTC 339 consensus_1812#1 TGCCCCTCC--------------------------------------- 275 ** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||