These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TGGATCCAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTGCTGCAGTCGAGCGAGGCCAAGAAAGCCACCCGAGTCCCCTTCCTCCCATAGATCCAGCTCCCGCATTCTGATTGATGATGGAGTTAGGAGATTGCCTGAACCGATGGAGACATTGCCAACCCGTGGAAGGAGCAACACGAAGAAGGTGAAGGCGAGTGGGGGCAGCACGGATGAGGCGAGGCAGCTGGAGGCGAAGGCCTTGTCCTTGTACTCACGGAGAAATCACAAGCGTAGAACCACACAAGAGATCACTTTCTTTGGGCTCATATGGAAGAGAAGCAAGAATGACCTACGTAGCAGCAAGCTCAAGGCAGATGATGTTATTCTTAGAAGCAGGGNTGGCGTAGGTTCGNCGTTGAAACCGA] [+] EMBL AU062420 [TGGATCCAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTGCTGCAGTCGAGCGAGGCCAAGAAAGCCACCCGAGTCCCCTTCCTCCCATAGATCCAGCTCCCGCATTCTGATTGATGATGGAGTTAGGAGATTGCCTGAACCGATGGAGACATTGCCAACCCGTGGAAGGAGCAACACGAAGAAGGTGAAGGCGAGTGGGGGCAGCACGGATGAGGCGAGGCAGCTGGAGGCGAAGGCCTTGTCCTTGTACTCACGGAGAAATCACAAGCGTAGAACCACACAAGAGATCACTTTCTTTGGGCTCATATGGAAGAGAAGCAAGAATGACCTACGTAGCAGCAAGCTCAAGGCAGATGATGTTATTCTTAGAAGCAGGGNTGGCGTAGGTTCGNCGTTGAAACCGA] consensusID : consensus_1815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [GCATATGGTTCTTAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTNCTGCAGTCGAGCGAGGNCAAGAAAGCCACCCGANTCCCNTTCCTCCCATAGATCCAGCTCNNGCATTCTNATTGATGATGGAGTTAGGAGATTNCNTNAACCNATGGAGACATTNCCAACCCGTGGAAGGAGCAACACGATGAAGGTNAAGGCGAGTNGGGGNANCACGGATTAGGCGANNCAGCTNTTAGGCGAAGGGCTTNTCCTTTT] [+] EMBL AU068511 [GCATATGGTTCTTAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTNCTGCAGTCGAGCGAGGNCAAGAAAGCCACCCGANTCCCNTTCCTCCCATAGATCCAGCTCNNGCATTCTNATTGATGATGGAGTTAGGAGATTNCNTNAACCNATGGAGACATTNCCAACCCGTGGAAGGAGCAACACGATGAAGGTNAAGGCGAGTNGGGGNANCACGGATTAGGCGANNCAGCTNTTAGGCGAAGGGCTTNTCCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1815#0 -----TGGATCC-AAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTGCTGCAGTCG 54 consensus_1815#1 GCATATGGTTCTTAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTNCTGCAGTCG 60 *** ** ************************************* ********* consensus_1815#0 AGCGAGGCCAAGAAAGCCACCCGAGTCCCCTTCCTCCCATAGATCCAGCTCCCGCATTCT 114 consensus_1815#1 AGCGAGGNCAAGAAAGCCACCCGANTCCCNTTCCTCCCATAGATCCAGCTCNNGCATTCT 120 ******* **************** **** ********************* ******* consensus_1815#0 GATTGATGATGGAGTTAGGAGATTGCCTGAACCGATGGAGACATTGCCAACCCGTGGAAG 174 consensus_1815#1 NATTGATGATGGAGTTAGGAGATTNCNTNAACCNATGGAGACATTNCCAACCCGTGGAAG 180 *********************** * * **** *********** ************** consensus_1815#0 GAGCAACACGAAGAAGGTGAAGGCGAGTGGGGGCAGCACGGATGAGGCGAGGCAGCTGG- 233 consensus_1815#1 GAGCAACACGATGAAGGTNAAGGCGAGTNGGGGNANCACGGATTAGGCGANNCAGCTNTT 240 *********** ****** ********* **** * ******* ****** ***** consensus_1815#0 AGGCGAAGGCCTTGTCCTTGTACTCACGGAGAAATCACAAGCGTAGAACCACACAAGAGA 293 consensus_1815#1 AGGCGAAGGGCTTNTCCTTTT--------------------------------------- 261 ********* *** ***** * consensus_1815#0 TCACTTTCTTTGGGCTCATATGGAAGAGAAGCAAGAATGACCTACGTAGCAGCAAGCTCA 353 consensus_1815#1 ------------------------------------------------------------ consensus_1815#0 AGGCAGATGATGTTATTCTTAGAAGCAGGGNTGGCGTAGGTTCGNCGTTGAAACCGA 410 consensus_1815#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||