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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[TTTTTTTTTTTTTTTTTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAGACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTTCGAAAAAAAAATACACATTCCACAGCCAGCCACAAGCGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACAAACACTAACCTTTCAGTATTCTCAGCTCCCAAAAGCATAGGTTACTTTGAAACAGTCAATATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCTCCGTGGTCTATCAGGTTGATCCACACTAGCCCTTGGCTTATCAGGATGATCTACACTCTTTCTGCTTTTATCTCTCCAATCTATGCTTCCTCTTGGTTTTTCCCGCCTATCAACGCTATGCCTGTGATCAATGCTTGACCTAGATTTATCCTTTACATCCGGGCTTTTTCTTGAGCTCTGCATACTTTCTGATCCTATTTCACAAGGATCTGAAGGACCTGAGCTCCCTGAGGATTCATCTTTTGTAGGGGGTAATTTCTCAATGGCCATGACAAACTTTTTTAGGGGCCTGGATGGATTCTGGATATAGTTCCAGATTACAATGGTTTCCACCTTTGACCCCCAGAGGCTCATACTTTATTTTAAAGA]
[+] EMBL CA762262 [TTTTTTTTTTTTTTTTTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAGACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTTCGAAAAAAAAATACACATTCCACAGCCAGCCACAAGCGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACAAACACTAACCTTTCAGTATTCTCAGCTCCCAAAAGCATAGGTTACTTTGAAACAGTCAATATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCTCCGTGGTCTATCAGGTTGATCCACACTAGCCCTTGGCTTATCAGGATGATCTACACTCTTTCTGCTTTTATCTCTCCAATCTATGCTTCCTCTTGGTTTTTCCCGCCTATCAACGCTATGCCTGTGATCAATGCTTGACCTAGATTTATCCTTTACATCCGGGCTTTTTCTTGAGCTCTGCATACTTTCTGATCCTATTTCACAAGGATCTGAAGGACCTGAGCTCCCTGAGGATTCATCTTTTGTAGGGGGTAATTTCTCAATGGCCATGACAAACTTTTTTAGGGGCCTGGATGGATTCTGGATATAGTTCCAGATTACAATGGTTTCCACCTTTGACCCCCAGAGGCTCATACTTTATTTTAAAGA]
consensusID : consensus_1824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[TTTGTGGTGGGGTGGGGGGNNNGGNNGGNNGNGNNTTTTNTTNTTTTTAAAACTCGCGAGAGGGACAAAAAAATTCCACAGTTTTGTTAGAATCACATCTTTGAAATGTTCCCNGTGTGAAAGAAAAACTGGCCAGTATAATGATACACCAATATGTACATGACATCTATGTAAGAACGGTGCTCCTTAGTGCTCCACGGCAGTGTCGTTCTTGAACTCAACAAAAGAATGGTACTCCAAAAACTCAAAAGGGTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAGACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTCCGAAAAAAAAATACACATTCCACAGCCAGCCACAAACGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACAAACACTAACCTTTCAGTATTCTCAGCTCCCAGAAGCATAGGTTACTTTGAAACAGTCAATATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCTCCGTGGTCTATCAGGTTGACTCGTGCCGAATTCTGCAGCCCGGAGA]
[-] EMBL CA756504 [TTTGTGGTGGGGTGGGGGGNNNGGNNGGNNGNGNNTTTTNTTNTTTTTAAAACTCGCGAGAGGGACAAAAAAATTCCACAGTTTTGTTAGAATCACATCTTTGAAATGTTCCCNGTGTGAAAGAAAAACTGGCCAGTATAATGATACACCAATATGTACATGACATCTATGTAAGAACGGTGCTCCTTAGTGCTCCACGGCAGTGTCGTTCTTGAACTCAACAAAAGAATGGTACTCCAAAAACTCAAAAGGGTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAGACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTCCGAAAAAAAAATACACATTCCACAGCCAGCCACAAACGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACAAACACTAACCTTTCAGTATTCTCAGCTCCCAGAAGCATAGGTTACTTTGAAACAGTCAATATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCTCCGTGGTCTATCAGGTTGACTCGTGCCGAATTCTGCAGCCCGGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1824#0 ------------------------------------------------------------
consensus_1824#1 TTTGTGGTGGGGTGGGGGGNNNGGNNGGNNGNGNNTTTTNTTNTTTTTAAAACTCGCGAG 60
consensus_1824#0 ------------------------------------------------------------
consensus_1824#1 AGGGACAAAAAAATTCCACAGTTTTGTTAGAATCACATCTTTGAAATGTTCCCNGTGTGA 120
consensus_1824#0 ------------------------------------------------------------
consensus_1824#1 AAGAAAAACTGGCCAGTATAATGATACACCAATATGTACATGACATCTATGTAAGAACGG 180
consensus_1824#0 ---------------------------------------------------------TTT 3
consensus_1824#1 TGCTCCTTAGTGCTCCACGGCAGTGTCGTTCTTGAACTCAACAAAAGAATGGTACTCCAA 240
consensus_1824#0 TTTTTTTTTTTTTTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAG 63
consensus_1824#1 AAACTCAAAAGGGTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAG 300
* ***********************************************
consensus_1824#0 ACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTTCGAAAAAAAAATACACA 123
consensus_1824#1 ACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTCCGAAAAAAAAATACACA 360
****************************************** *****************
consensus_1824#0 TTCCACAGCCAGCCACAAGCGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACA 183
consensus_1824#1 TTCCACAGCCAGCCACAAACGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACA 420
****************** *****************************************
consensus_1824#0 AACACTAACCTTTCAGTATTCTCAGCTCCCAAAAGCATAGGTTACTTTGAAACAGTCAAT 243
consensus_1824#1 AACACTAACCTTTCAGTATTCTCAGCTCCCAGAAGCATAGGTTACTTTGAAACAGTCAAT 480
******************************* ****************************
consensus_1824#0 ATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCT 303
consensus_1824#1 ATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCT 540
************************************************************
consensus_1824#0 CCGTGGTCTATCAGGTTGATCCACACTAGCCCTTGGCTTATCAGGATGATCTACACTCTT 363
consensus_1824#1 CCGTGGTCTATCAGGTTGACTCGTGCCGAATTCTGCAGCCCGGAGA-------------- 586
******************* * * ** **
consensus_1824#0 TCTGCTTTTATCTCTCCAATCTATGCTTCCTCTTGGTTTTTCCCGCCTATCAACGCTATG 423
consensus_1824#1 ------------------------------------------------------------
consensus_1824#0 CCTGTGATCAATGCTTGACCTAGATTTATCCTTTACATCCGGGCTTTTTCTTGAGCTCTG 483
consensus_1824#1 ------------------------------------------------------------
consensus_1824#0 CATACTTTCTGATCCTATTTCACAAGGATCTGAAGGACCTGAGCTCCCTGAGGATTCATC 543
consensus_1824#1 ------------------------------------------------------------
consensus_1824#0 TTTTGTAGGGGGTAATTTCTCAATGGCCATGACAAACTTTTTTAGGGGCCTGGATGGATT 603
consensus_1824#1 ------------------------------------------------------------
consensus_1824#0 CTGGATATAGTTCCAGATTACAATGGTTTCCACCTTTGACCCCCAGAGGCTCATACTTTA 663
consensus_1824#1 ------------------------------------------------------------
consensus_1824#0 TTTTAAAGA 672
consensus_1824#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||