These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1825#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [TTTTTTTTTTGATTCTCAACTCCTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTTGGTACATGAAAACAAGGGGAAAAGGCTGCATAACGTTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGCCCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACACGCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACCGAACTTAACAATGCTCACTTGACACGGCTCGAATAAACAATGCAGTGTGACAGCACAGTTCTGCGTGAATCACACACTCAGATCCTGCAAAAACGAATGGGAAGTATCTCAGTTTTCATACAAGAGCTGCATAAAAAAATGAACTGGAAAAAATGGAAATAGCAGATAAAAGCAAAATTGCAGGGCATGAGGTACTTCAGGATTCCTGATTGTTTCTGTTTCAGTGACCTTTCA] [+] EMBL CF324856 [TTTTTTTTTTGATTCTCAACTCCTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTTGGTACATGAAAACAAGGGGAAAAGGCTGCATAACGTTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGCCCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACACGCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACCGAACTTAACAATGCTCACTTGACACGGCTCGAATAAACAATGCAGTGTGACAGCACAGTTCTGCGTGAATCACACACTCAGATCCTGCAAAAACGAATGGGAAGTATCTCAGTTTTCATACAAGAGCTGCATAAAAAAATGAACTGGAAAAAATGGAAATAGCAGATAAAAGCAAAATTGCAGGGCATGAGGTACTTCAGGATTCCTGATTGTTTCTGTTTCAGTGACCTTTCA] consensusID : consensus_1825#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [TTTTTTTTTTATGGAGCACAAAGAAATCACACACAGGTAACAGGGCATGATTCTCAACTCCTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTGGTACATGAAAACAAGGGGAAAAGGCTGCATAACGGTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGCCCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACACGCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACGAACTTAACAAGTGTCACTTGACACGGCTCGAATAAACAACGCAGGTGTGACAGCACAGTTCTGCGTGAATCACACACTCAGATCCTGCAAAAACGAATGGGTGGCCTCCCACAACTTCCCAAATACATATCTCATAAAAACTACAAGGACCTGTTGATCCATAGATTTCCATCAAACATATCAG] [-] EMBL BI812736 [TTTTTTTTTTATGGAGCACAAAGAAATCACACACAGGTAACAGGGCATGATTCTCAACTCCTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTGGTACATGAAAACAAGGGGAAAAGGCTGCATAACGGTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGCCCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACACGCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACGAACTTAACAAGTGTCACTTGACACGGCTCGAATAAACAACGCAGGTGTGACAGCACAGTTCTGCGTGAATCACACACTCAGATCCTGCAAAAACGAATGGGTGGCCTCCCACAACTTCCCAAATACATATCTCATAAAAACTACAAGGACCTGTTGATCCATAGATTTCCATCAAACATATCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1825#0 --------------------------------------TTTTTTTTTTGATTCTCAACTC 22 consensus_1825#1 TTTTTTTTTTATGGAGCACAAAGAAATCACACACAGGTAACAGGGCATGATTCTCAACTC 60 ************* consensus_1825#0 CTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTTGGTACATGAAAACAAGGGGAA 82 consensus_1825#1 CTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATT-GGTACATGAAAACAAGGGGAA 119 ************************************** ********************* consensus_1825#0 AAGGCTGCATAACGTTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGC 142 consensus_1825#1 AAGGCTGCATAACGGTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGC 179 ************** ********************************************* consensus_1825#0 CCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACAC 202 consensus_1825#1 CCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACAC 239 ************************************************************ consensus_1825#0 GCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACCGAACTTAACAATGCT 262 consensus_1825#1 GCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGAC-GAACTTAACAAGTGT 298 ******************************************** *********** * consensus_1825#0 CACTTGACACGGCTCGAATAAACAATGCAG-TGTGACAGCACAGTTCTGCGTGAATCACA 321 consensus_1825#1 CACTTGACACGGCTCGAATAAACAACGCAGGTGTGACAGCACAGTTCTGCGTGAATCACA 358 ************************* **** ***************************** consensus_1825#0 CACTCAGATCCTGCAAAAACGAATGGGAAGTATCTCAGTTTTCATACAAGAGCTGCATAA 381 consensus_1825#1 CACTCAGATCCTGCAAAAACGAATGGGTGGCCTCCCAC------------AACTTCCCAA 406 *************************** * ** ** * ** * ** consensus_1825#0 AAAAATGAACTGGAAAAAATGGAAATAGCAGATAAAAGCAAAATTGCAGGGCATGAGGTA 441 consensus_1825#1 ATACATATCTCATAAAAACTACAAGGACCTGTTGATCCATAGATTTC----CATCAAACA 462 * * ** ***** * ** * * * * * * *** * *** * * consensus_1825#0 CTTCAGGATTCCTGATTGTTTCTGTTTCAGTGACCTTTCA 481 consensus_1825#1 TATCAG---------------------------------- 468 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||