These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1826#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [ACGAGGGCGCATTGCACGGACGTACTCTTCCCAGCAAAGACTTGGTGATGGTGATCGATGCCGCCATTCCTCTGCCGTACTTCGATCGCTTGCTTAACGCGAATTAAGCTACCAATAATCGAAGCTTCCACCCAACCTTTTTTTTTCCAACGACGACCTTGATCTTGGAACTTTTGGCTGATGACCAGTCCGTCAAACATCCCGGCCAGCTTAATTAGCTGCCGATGTTGACGGGCACCGTGGCGAGAGAGACTTAAGCAGCAACGGCCATTGTTTGTACGCGCTTGCGTTCGATCGGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGGCGGCGTCGCAGGCGTACCTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGGCACACCGACCTCACCAACGCCATCACGGCCGACTTCACATGCTGCTGCTTGTCTCTGTGGTGCGGACCATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGATATGTGTGCTGTGCTGGGTACATGCCATGCAGCGGGAGATGCGGCGAGAGCAACTGCCCCG] [+] EMBL CF306771 [ACGAGGGCGCATTGCACGGACGTACTCTTCCCAGCAAAGACTTGGTGATGGTGATCGATGCCGCCATTCCTCTGCCGTACTTCGATCGCTTGCTTAACGCGAATTAAGCTACCAATAATCGAAGCTTCCACCCAACCTTTTTTTTTCCAACGACGACCTTGATCTTGGAACTTTTGGCTGATGACCAGTCCGTCAAACATCCCGGCCAGCTTAATTAGCTGCCGATGTTGACGGGCACCGTGGCGAGAGAGACTTAAGCAGCAACGGCCATTGTTTGTACGCGCTTGCGTTCGATCGGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGGCGGCGTCGCAGGCGTACCTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGGCACACCGACCTCACCAACGCCATCACGGCCGACTTCACATGCTGCTGCTTGTCTCTGTGGTGCGGACCATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGATATGTGTGCTGTGCTGGGTACATGCCATGCAGCGGGAGATGCGGCGAGAGCAACTGCCCCG] consensusID : consensus_1826#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [GGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGGCGGCGTCGCAGGCGTACCTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGGCACACCGACCTCACCAACGCCATCACGGCCGACTTCACATGCTGCTGCTTGTCTCTGTGGTGGTGAGTTTGTTCATCTAGGTTTCTGAATCTCTTCATGGCTGCATCGATCTTCAGCTTAGGAATATTGCTAAGTCTGACATGTTTCTTATCTGATCCATTTCTCCTTATCCAGCGGACCATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGGTAAATTTGCTCTTTTTCCACCATATGTTTGTTCATGCGAAAGGGCATGTAGCTTAGTGGTTGCGGTAATCTGAATAGTACCCCAAGGTTCTAAGTTTAAATCTCTATATGAGCGAATTTCAAATTGGGTTTGAGGGGCTAAGTTTTCAATTTGAAAGGCTACATATATTCGATTGGACATAGAGACCGGGTAAAAATTACCCTTCTCTAGAAAAAATAAATATG] [+] EMBL CF305806 [GGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGGCGGCGTCGCAGGCGTACCTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGGCACACCGACCTCACCAACGCCATCACGGCCGACTTCACATGCTGCTGCTTGTCTCTGTGGTGGTGAGTTTGTTCATCTAGGTTTCTGAATCTCTTCATGGCTGCATCGATCTTCAGCTTAGGAATATTGCTAAGTCTGACATGTTTCTTATCTGATCCATTTCTCCTTATCCAGCGGACCATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGGTAAATTTGCTCTTTTTCCACCATATGTTTGTTCATGCGAAAGGGCATGTAGCTTAGTGGTTGCGGTAATCTGAATAGTACCCCAAGGTTCTAAGTTTAAATCTCTATATGAGCGAATTTCAAATTGGGTTTGAGGGGCTAAGTTTTCAATTTGAAAGGCTACATATATTCGATTGGACATAGAGACCGGGTAAAAATTACCCTTCTCTAGAAAAAATAAATATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1826#0 ACGAGGGCGCATTGCACGGACGTACTCTTCCCAGCAAAGAC-TTGGTGATG-GTGATCGA 58 consensus_1826#1 -------GGCAGTGCAAGAGC-CACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGA 52 *** **** * * ** * * * * * * * * ** ** consensus_1826#0 TGCCGCCATTCCTCTGCCGTACTTCGATCGCTTGCTTAACGCGAATTAAGCTACC--AAT 116 consensus_1826#1 GATGGCGGCGTCGCAGGCGTACCTCGACAAG--GCGCAGCTCCGGCAGAGCTACCGCAAC 110 ** * * * ***** **** ** * * * ******* ** consensus_1826#0 AATCGAAGCTTCCACCCAACCTTTTTTTTTCCAACGACGACCTTG-ATCTTGGAACTTTT 175 consensus_1826#1 GTCTGGCACACCGACCTCACCAACGCCATCACGGC--CGACTTCACATGCTGCTGCTTGT 168 * * * *** *** * * * **** * ** ** *** * consensus_1826#0 GGCTG--ATGACCAGTCCGTCAAACATCCCGGCCAGCTTAATTAGCTGCCGATGTTGACG 233 consensus_1826#1 CTCTGTGGTGGTGAGTTTGTTCATCTAGGTTTCTGAATCTCTTCATGGCTG-CATCGATC 227 *** ** *** ** * * * * ** ** * * ** consensus_1826#0 GGCACCGTGGCGAGAGAGACTTAAGCAGCAACGGCCATTGTTTGTACGCGCTTGCGTTCG 293 consensus_1826#1 TTCAGCTTAG-GAATATTGCTAAGTCTGACATGTTTCTTATCTG-ATCCATTTCTCCTTA 285 ** * * * ** ** * * * * * ** * ** * * ** * consensus_1826#0 ATCGGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGG 353 consensus_1826#1 TCCAGCGGACCATGTGTGTCTTACAT--GCTGCGCAAACGT--GCGCTCTACAATGACA- 340 * ** * ** * * * * ** ** * * ** *** * ** ** consensus_1826#0 CGGCGTCGCAGGCGTAC-CTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGG 412 consensus_1826#1 TGTCGAGGTAAATTTGCTCTTTTTCCACCATATGTTTGTTCATGCGAAAG-GGCATGTAG 399 * ** * * * * ** * * * * ** * * * * * * consensus_1826#0 CACACCGACCTCACCAACGCCATCACGGCC--GACTTCACATGCTGCTGCTTGTCTCTGT 470 consensus_1826#1 CTTAGTGGTTGCGGTAATCTGAATAGTACCCCAAGGTTCTAAGTTTAAATCTCTATATGA 459 * * * * ** * * ** * * * * * * * * ** consensus_1826#0 GGTGCGGACCATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATG--ACATGTC 528 consensus_1826#1 GCGAATTTCAAATTGGGTTTGAGGGGCT----AAGTTTTCAATTTGAAAGGCTACATATA 515 * * * ** ** * * *** ** * * * * ** * **** * consensus_1826#0 GAGATATGTGTGCTGTG-CTGGGTACATGCCATGCAGCGGGAGATGCGGCGAGAGCAACT 587 consensus_1826#1 TTCGATTGGACATAGAGACCGGGTAAAAATTACCCTTCTCTAGAAAAAATAAATATG--- 572 ** * * * ***** * * * * *** * consensus_1826#0 GCCCCG 593 consensus_1826#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||