cluster # 1826

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Oryza sativa
cluster # 1826 cluster # 1826 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1826#0 length = 593 sequences # 1

consensus_1826#1 length = 572 sequences # 1

consensusID : consensus_1826#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [ACGAGGGCGCATTGCACGGACGTACTCTTCCCAGCAAAGACTTGGTGATGGTGATCGATGCCGCCATTCCTCTGCCGTACTTCGATCGCTTGCTTAACGCGAATTAAGCTACCAATAATCGAAGCTTCCACCCAACCTTTTTTTTTCCAACGACGACCTTGATCTTGGAACTTTTGGCTGATGACCAGTCCGTCAAACATCCCGGCCAGCTTAATTAGCTGCCGATGTTGACGGGCACCGTGGCGAGAGAGACTTAAGCAGCAACGGCCATTGTTTGTACGCGCTTGCGTTCGATCGGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGGCGGCGTCGCAGGCGTACCTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGGCACACCGACCTCACCAACGCCATCACGGCCGACTTCACATGCTGCTGCTTGTCTCTGTGGTGCGGACCATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGATATGTGTGCTGTGCTGGGTACATGCCATGCAGCGGGAGATGCGGCGAGAGCAACTGCCCCG]

[+] EMBL CF306771             [ACGAGGGCGCATTGCACGGACGTACTCTTCCCAGCAAAGACTTGGTGATGGTGATCGATGCCGCCATTCCTCTGCCGTACTTCGATCGCTTGCTTAACGCGAATTAAGCTACCAATAATCGAAGCTTCCACCCAACCTTTTTTTTTCCAACGACGACCTTGATCTTGGAACTTTTGGCTGATGACCAGTCCGTCAAACATCCCGGCCAGCTTAATTAGCTGCCGATGTTGACGGGCACCGTGGCGAGAGAGACTTAAGCAGCAACGGCCATTGTTTGTACGCGCTTGCGTTCGATCGGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGGCGGCGTCGCAGGCGTACCTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGGCACACCGACCTCACCAACGCCATCACGGCCGACTTCACATGCTGCTGCTTGTCTCTGTGGTGCGGACCATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGATATGTGTGCTGTGCTGGGTACATGCCATGCAGCGGGAGATGCGGCGAGAGCAACTGCCCCG]




>consensus_1826#0
ACGAGGGCGCATTGCACGGACGTACTCTTCCCAGCAAAGACTTGGTGATGGTGATCGATG
CCGCCATTCCTCTGCCGTACTTCGATCGCTTGCTTAACGCGAATTAAGCTACCAATAATC
GAAGCTTCCACCCAACCTTTTTTTTTCCAACGACGACCTTGATCTTGGAACTTTTGGCTG
ATGACCAGTCCGTCAAACATCCCGGCCAGCTTAATTAGCTGCCGATGTTGACGGGCACCG
TGGCGAGAGAGACTTAAGCAGCAACGGCCATTGTTTGTACGCGCTTGCGTTCGATCGGCA
GTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGGCGGCGTC
GCAGGCGTACCTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGGCACACCGA
CCTCACCAACGCCATCACGGCCGACTTCACATGCTGCTGCTTGTCTCTGTGGTGCGGACC
ATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGATATGTGTG
CTGTGCTGGGTACATGCCATGCAGCGGGAGATGCGGCGAGAGCAACTGCCCCG

consensusID : consensus_1826#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [GGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGGCGGCGTCGCAGGCGTACCTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGGCACACCGACCTCACCAACGCCATCACGGCCGACTTCACATGCTGCTGCTTGTCTCTGTGGTGGTGAGTTTGTTCATCTAGGTTTCTGAATCTCTTCATGGCTGCATCGATCTTCAGCTTAGGAATATTGCTAAGTCTGACATGTTTCTTATCTGATCCATTTCTCCTTATCCAGCGGACCATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGGTAAATTTGCTCTTTTTCCACCATATGTTTGTTCATGCGAAAGGGCATGTAGCTTAGTGGTTGCGGTAATCTGAATAGTACCCCAAGGTTCTAAGTTTAAATCTCTATATGAGCGAATTTCAAATTGGGTTTGAGGGGCTAAGTTTTCAATTTGAAAGGCTACATATATTCGATTGGACATAGAGACCGGGTAAAAATTACCCTTCTCTAGAAAAAATAAATATG]

[+] EMBL CF305806             [GGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGGCGGCGTCGCAGGCGTACCTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGGCACACCGACCTCACCAACGCCATCACGGCCGACTTCACATGCTGCTGCTTGTCTCTGTGGTGGTGAGTTTGTTCATCTAGGTTTCTGAATCTCTTCATGGCTGCATCGATCTTCAGCTTAGGAATATTGCTAAGTCTGACATGTTTCTTATCTGATCCATTTCTCCTTATCCAGCGGACCATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGGTAAATTTGCTCTTTTTCCACCATATGTTTGTTCATGCGAAAGGGCATGTAGCTTAGTGGTTGCGGTAATCTGAATAGTACCCCAAGGTTCTAAGTTTAAATCTCTATATGAGCGAATTTCAAATTGGGTTTGAGGGGCTAAGTTTTCAATTTGAAAGGCTACATATATTCGATTGGACATAGAGACCGGGTAAAAATTACCCTTCTCTAGAAAAAATAAATATG]




>consensus_1826#1
GGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGGCGG
CGTCGCAGGCGTACCTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGGCACA
CCGACCTCACCAACGCCATCACGGCCGACTTCACATGCTGCTGCTTGTCTCTGTGGTGGT
GAGTTTGTTCATCTAGGTTTCTGAATCTCTTCATGGCTGCATCGATCTTCAGCTTAGGAA
TATTGCTAAGTCTGACATGTTTCTTATCTGATCCATTTCTCCTTATCCAGCGGACCATGT
GTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGGTAAATTTGCTCT
TTTTCCACCATATGTTTGTTCATGCGAAAGGGCATGTAGCTTAGTGGTTGCGGTAATCTG
AATAGTACCCCAAGGTTCTAAGTTTAAATCTCTATATGAGCGAATTTCAAATTGGGTTTG
AGGGGCTAAGTTTTCAATTTGAAAGGCTACATATATTCGATTGGACATAGAGACCGGGTA
AAAATTACCCTTCTCTAGAAAAAATAAATATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1826#0      ACGAGGGCGCATTGCACGGACGTACTCTTCCCAGCAAAGAC-TTGGTGATG-GTGATCGA 58
consensus_1826#1      -------GGCAGTGCAAGAGC-CACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGA 52
                              *** **** *  *  **      *   *    * * *  *  * * **  **

consensus_1826#0      TGCCGCCATTCCTCTGCCGTACTTCGATCGCTTGCTTAACGCGAATTAAGCTACC--AAT 116
consensus_1826#1      GATGGCGGCGTCGCAGGCGTACCTCGACAAG--GCGCAGCTCCGGCAGAGCTACCGCAAC 110
                          **     * * * ***** ****      **  * * *      *******  ** 

consensus_1826#0      AATCGAAGCTTCCACCCAACCTTTTTTTTTCCAACGACGACCTTG-ATCTTGGAACTTTT 175
consensus_1826#1      GTCTGGCACACCGACCTCACCAACGCCATCACGGC--CGACTTCACATGCTGCTGCTTGT 168
                          *   *  * ***  ***       *  *  *  **** *   **  **   *** *

consensus_1826#0      GGCTG--ATGACCAGTCCGTCAAACATCCCGGCCAGCTTAATTAGCTGCCGATGTTGACG 233
consensus_1826#1      CTCTGTGGTGGTGAGTTTGTTCATCTAGGTTTCTGAATCTCTTCATGGCTG-CATCGATC 227
                        ***   **   ***  **  * *       *    *   **    ** *   * **  

consensus_1826#0      GGCACCGTGGCGAGAGAGACTTAAGCAGCAACGGCCATTGTTTGTACGCGCTTGCGTTCG 293
consensus_1826#1      TTCAGCTTAG-GAATATTGCTAAGTCTGACATGTTTCTTATCTG-ATCCATTTCTCCTTA 285
                        ** * * * **      ** *  * *  * *    ** * ** *  *  **    *  

consensus_1826#0      ATCGGCAGTGCAAGAGCCACCAAGATCGATAGCTCCATCGCCGGCGAGCGACGGAGATGG 353
consensus_1826#1      TCCAGCGGACCATGTGTGTCTTACAT--GCTGCGCAAACGT--GCGCTCTACAATGACA- 340
                        * ** *  ** * *   *  * **     ** * * **   ***  * **   **   

consensus_1826#0      CGGCGTCGCAGGCGTAC-CTCGACAAGGCGCAGCTCCGGCAGAGCTACCGCAACGTCTGG 412
consensus_1826#1      TGTCGAGGTAAATTTGCTCTTTTTCCACCATATGTTTGTTCATGCGAAAG-GGCATGTAG 399
                       * **  * *    * * **        *  *  *  *     ** *  *   * * * *

consensus_1826#0      CACACCGACCTCACCAACGCCATCACGGCC--GACTTCACATGCTGCTGCTTGTCTCTGT 470
consensus_1826#1      CTTAGTGGTTGCGGTAATCTGAATAGTACCCCAAGGTTCTAAGTTTAAATCTCTATATGA 459
                      *  *  *    *   **    *  *   **   *  *   * * *      * * * ** 

consensus_1826#0      GGTGCGGACCATGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATG--ACATGTC 528
consensus_1826#1      GCGAATTTCAAATTGGGTTTGAGGGGCT----AAGTTTTCAATTTGAAAGGCTACATATA 515
                      *       * *  ** ** * *   ***    **   * *  * *  ** *  **** * 

consensus_1826#0      GAGATATGTGTGCTGTG-CTGGGTACATGCCATGCAGCGGGAGATGCGGCGAGAGCAACT 587
consensus_1826#1      TTCGATTGGACATAGAGACCGGGTAAAAATTACCCTTCTCTAGAAAAAATAAATATG--- 572
                            **      * * * ***** *    *  *  *   ***       *        

consensus_1826#0      GCCCCG 593
consensus_1826#1      ------