cluster # 1836

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Oryza sativa
cluster # 1836 cluster # 1836 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1836#0 length = 686 sequences # 1

consensus_1836#1 length = 588 sequences # 1

consensusID : consensus_1836#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [TGCGGGAGTACAAACACTGCAAGAAAACCAGCAGGTCAACAGCATCCAAATTCCTAGATAACAAGACGCATTACCAAGTAGCCAACACCACGCCTCGATCGATCGGAACACACACACCATGTCAACCACTGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCACTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGGCGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGGAGCTGGTGAACAAGAATGTGGACGCGCTCAAGGAGGAGTACCACGTCCCGCCGTCGTGGAGCGTGCAGAGGGACAAGGGCATGGTGAGGGGCGCCGATGGCCACTGGAAGTTGATGGATTACGAGGGAGAAGAAAGTAGCCAGGACAAATGACGCTGTGATCAATGTGAAATGTGAAGCTAACTAGCTTGTCCCTATGTTTCGTCATATGCTGTTTTTGCTTCCGATTGTGTGCAATCTGTGACATGCGCGTAAATTTTCTGTACCTGTAGCCTGTAGTGAAATAAATCAGTGAACCGTG]

[+] EMBL AK063136             [TGCGGGAGTACAAACACTGCAAGAAAACCAGCAGGTCAACAGCATCCAAATTCCTAGATAACAAGACGCATTACCAAGTAGCCAACACCACGCCTCGATCGATCGGAACACACACACCATGTCAACCACTGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCACTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGGCGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGGAGCTGGTGAACAAGAATGTGGACGCGCTCAAGGAGGAGTACCACGTCCCGCCGTCGTGGAGCGTGCAGAGGGACAAGGGCATGGTGAGGGGCGCCGATGGCCACTGGAAGTTGATGGATTACGAGGGAGAAGAAAGTAGCCAGGACAAATGACGCTGTGATCAATGTGAAATGTGAAGCTAACTAGCTTGTCCCTATGTTTCGTCATATGCTGTTTTTGCTTCCGATTGTGTGCAATCTGTGACATGCGCGTAAATTTTCTGTACCTGTAGCCTGTAGTGAAATAAATCAGTGAACCGTG]




>consensus_1836#0
TGCGGGAGTACAAACACTGCAAGAAAACCAGCAGGTCAACAGCATCCAAATTCCTAGATA
ACAAGACGCATTACCAAGTAGCCAACACCACGCCTCGATCGATCGGAACACACACACCAT
GTCAACCACTGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCA
CTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGG
CGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGG
CGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGGCAAGCGCGGCGGGTT
CAAGCTGGAGGTCGACCGGGACGTGGAGCTGGTGAACAAGAATGTGGACGCGCTCAAGGA
GGAGTACCACGTCCCGCCGTCGTGGAGCGTGCAGAGGGACAAGGGCATGGTGAGGGGCGC
CGATGGCCACTGGAAGTTGATGGATTACGAGGGAGAAGAAAGTAGCCAGGACAAATGACG
CTGTGATCAATGTGAAATGTGAAGCTAACTAGCTTGTCCCTATGTTTCGTCATATGCTGT
TTTTGCTTCCGATTGTGTGCAATCTGTGACATGCGCGTAAATTTTCTGTACCTGTAGCCT
GTAGTGAAATAAATCAGTGAACCGTG

consensusID : consensus_1836#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [TGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCACTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGGCGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGCGTCGACCCAGCTGGCGGGACTGTACGAGGTGACGGCCTTCTTCTACGCCACCGCGGGCGCCGGCGGCGTGCCGGCGCCGTTCATGGTGCGGAACCGGGAGTCGAACTGGATGGGGTACGTGGCCGTGGCGACGGACGCCGGGGTGGCCGCGCTGGGCAGGCGCGACGTGGTGGTCGCGTGGCGCGGCACCGTCCGGCCCATGGAGTGGCTCAACGACCTCGACTTCACGCTCGTGTCCGCCGNCGAGGGTGCACAGGGGGTGGCTGTCCATCTACACGGCGAGCGACCCGGCGTCCAAGTACAGCAAGCTCAGCGCCAGGGAGCAGATTTCGGATGAGATCAAGAGGCTAATGGACAAGTACAAGGACGAGG]

[+] EMBL CA756437             [TGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCACTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGGCGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGCGTCGACCCAGCTGGCGGGACTGTACGAGGTGACGGCCTTCTTCTACGCCACCGCGGGCGCCGGCGGCGTGCCGGCGCCGTTCATGGTGCGGAACCGGGAGTCGAACTGGATGGGGTACGTGGCCGTGGCGACGGACGCCGGGGTGGCCGCGCTGGGCAGGCGCGACGTGGTGGTCGCGTGGCGCGGCACCGTCCGGCCCATGGAGTGGCTCAACGACCTCGACTTCACGCTCGTGTCCGCCGNCGAGGGTGCACAGGGGGTGGCTGTCCATCTACACGGCGAGCGACCCGGCGTCCAAGTACAGCAAGCTCAGCGCCAGGGAGCAGATTTCGGATGAGATCAAGAGGCTAATGGACAAGTACAAGGACGAGG]




>consensus_1836#1
TGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCACTGGAAGGG
CCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGGCGAGCTGGC
GCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCG
GTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGCGTCGACCCAGCTGGCGGGACTGTA
CGAGGTGACGGCCTTCTTCTACGCCACCGCGGGCGCCGGCGGCGTGCCGGCGCCGTTCAT
GGTGCGGAACCGGGAGTCGAACTGGATGGGGTACGTGGCCGTGGCGACGGACGCCGGGGT
GGCCGCGCTGGGCAGGCGCGACGTGGTGGTCGCGTGGCGCGGCACCGTCCGGCCCATGGA
GTGGCTCAACGACCTCGACTTCACGCTCGTGTCCGCCGNCGAGGGTGCACAGGGGGTGGC
TGTCCATCTACACGGCGAGCGACCCGGCGTCCAAGTACAGCAAGCTCAGCGCCAGGGAGC
AGATTTCGGATGAGATCAAGAGGCTAATGGACAAGTACAAGGACGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1836#0      TGCGGGAGTACAAACACTGCAAGAAAACCAGCAGGTCAACAGCATCCAAATTCCTAGATA 60
consensus_1836#1      ------------------------------------------------------------
                                                                                  

consensus_1836#0      ACAAGACGCATTACCAAGTAGCCAACACCACGCCTCGATCGATCGGAACACACACACCAT 120
consensus_1836#1      ------------------------------------------------------------
                                                                                  

consensus_1836#0      GTCAACCACTGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCA 180
consensus_1836#1      ---------TGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCA 51
                               ***************************************************

consensus_1836#0      CTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGG 240
consensus_1836#1      CTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGG 111
                      ************************************************************

consensus_1836#0      CGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGG 300
consensus_1836#1      CGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGG 171
                      ************************************************************

consensus_1836#0      CGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGG-GCAAGCGCGGCGGGT 359
consensus_1836#1      CGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGCGTCGACCCAGCTGGC 231
                      ******************************************** *    * * ** ** 

consensus_1836#0      TCAAGCTGGAGGTCGACCGGGACGTGGAGCTGGTGAACAAGAATGTGGACGCGCTCAAGG 419
consensus_1836#1      G-GGACTGTACGAGGTGACGGCCTTCTTCTACGCCACCGCGGGCGCCGGCGGCGTGCCGG 290
                           *** * *  *    ** * *       *  * *  *   *  * **   *   **

consensus_1836#0      AGGAGTACCACGTCCCG---CCGTCGTGGAGCGTGCAGAGGGACAAGGGCATGGTGAGGG 476
consensus_1836#1      CGCCGTTCATGGTGCGGAACCGGGAGTCGAACTGGATGGGGTACGTGGCCGTGGCGACGG 350
                       *  ** *   ** * *   * *  ** ** *  *  * ** **  ** * *** ** **

consensus_1836#0      GCGCCGA--TGGCCACTGGAAGTTGATGGATTACGAGGGAGAAGAAA-GTAGC-CAGGAC 532
consensus_1836#1      ACGCCGGGGTGGCCGCGCTGGGCAGGCGCGACGTGGTGGTCGCGTGGCGCGGCACCGTCC 410
                       *****   ***** *     *  *  *      *  **    *    *  ** * *  *

consensus_1836#0      AAATGACGCTGTGA-TCAATG--TGAAATGTGAAGCTAACTAGCTTGTCCCTATGTTTCG 589
consensus_1836#1      GGCCCATGGAGTGGCTCAACGACCTCGACTTCACGCTCGT--GTCCGCCGNCGAGGGTGC 468
                           * *  ***  **** *      *  * * ***     *   * *     *  *  

consensus_1836#0      TCATATGCTGTTTTTGCTTCCG-ATTGTGTGCAATCTGTGACATGCGCGTAA-ATTTTCT 647
consensus_1836#1      ACAGGGGGTGGCTGTCCATCTACACGGCGAGCGACCCGGCGTCCAAGTACAGCAAGCTCA 528
                       **   * **  * * * **   *  * * ** * * *        *   *  *   ** 

consensus_1836#0      GTACCTGT-AGCCTGTAGTGAAATAAATCAGTGAACCG-TG------------------- 686
consensus_1836#1      GCGCCAGGGAGCAGATTTCGGATGAGATCAAGAGGCTAATGGACAAGTACAAGGACGAGG 588
                      *  ** *  ***   *   * *  * ****     *   **