These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [ACCTCCCTGACCTTATCGGCAGCGCCATCCCATCCCTTGCCGTCCCCCCAAGAGCTCACCCCTCCGCCTCGCTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCGACGCCCGCTTCACCCCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTTGCTGCTCCGGGGAGGTTTTCTTGGGTTATTTATCGGCTGGTGAGGTTCGTCCCCGCCAGGTTTCTGCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCGGTGCGTGGAGGAGGAGAAGCGTGCGGCGGAGGTTGTGGTGGTGATGGTGAGGAGCGAGTTGTACAGGAGGAGGGGTACCGATCAACCGGGAAGCTGGCGGTCGGGAAGTGGTGAGAGCGGCCAGATGACACGCCCATGTCCGTGATGTACCCTGGCGGAGGCGGCTGGGGCGCCGGTCGCTCACGGAAGTTCCACCCTTTGCTCCGACCGGAGAAACCGCCGCCGCTGGTACCGATGTCGCCCGACACCCCTGGCCAAGATGCAACCATCCTACATTGTCCCCCCACAAGATCCCCCTGGCTCTACGAACACACCTGCCGATGATGCCACACCAGT] [+] EMBL CA756425 [ACCTCCCTGACCTTATCGGCAGCGCCATCCCATCCCTTGCCGTCCCCCCAAGAGCTCACCCCTCCGCCTCGCTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCGACGCCCGCTTCACCCCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTTGCTGCTCCGGGGAGGTTTTCTTGGGTTATTTATCGGCTGGTGAGGTTCGTCCCCGCCAGGTTTCTGCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCGGTGCGTGGAGGAGGAGAAGCGTGCGGCGGAGGTTGTGGTGGTGATGGTGAGGAGCGAGTTGTACAGGAGGAGGGGTACCGATCAACCGGGAAGCTGGCGGTCGGGAAGTGGTGAGAGCGGCCAGATGACACGCCCATGTCCGTGATGTACCCTGGCGGAGGCGGCTGGGGCGCCGGTCGCTCACGGAAGTTCCACCCTTTGCTCCGACCGGAGAAACCGCCGCCGCTGGTACCGATGTCGCCCGACACCCCTGGCCAAGATGCAACCATCCTACATTGTCCCCCCACAAGATCCCCCTGGCTCTACGAACACACCTGCCGATGATGCCACACCAGT] consensusID : consensus_1840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [NANGNCTCACCCCTCCGCCTCGNTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCNCCGCCCGCTTCACCCCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTTGCTGCTCCGGGGAGGTTTTTNTTGGGCGATCGATCGGCTGGGCAGGTTCGTCGGAGGGAGGTTTCTNCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCNGTGCGTGGAGGANG] [+] EMBL OSC182 [NANGNCTCACCCCTCCGCCTCGNTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCNCCGCCCGCTTCACCCCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTTGCTGCTCCGGGGAGGTTTTTNTTGGGCGATCGATCGGCTGGGCAGGTTCGTCGGAGGGAGGTTTCTNCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCNGTGCGTGGAGGANG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1840#0 ACCTCCCTGACCTTATCGGCAGCGCCATCCCATCCCTTGCCGTCCCCCCAAGAGCTCACC 60 consensus_1840#1 -------------------------------------------------NANGNCTCACC 11 * ****** consensus_1840#0 CCTCCGCCTCGCTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCGACGCCCGCTTCACC 120 consensus_1840#1 CCTCCGCCTCGNTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCNCCGCCCGCTTCACC 71 *********** ********************************* ************* consensus_1840#0 CCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTT 180 consensus_1840#1 CCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTT 131 ************************************************************ consensus_1840#0 GCTGCTCCGGGGAGGTTTT-CTTGGGTTATTTATCGGCTGGTGAGGTTCGTCCCCGCCAG 239 consensus_1840#1 GCTGCTCCGGGGAGGTTTTTNTTGGGCGATCGATCGGCTGGGCAGGTTCGTCGGAGGGAG 191 ******************* ***** ** ********* ********* * ** consensus_1840#0 GTTTCTGCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCGGTGCGTGGAGGAGGAGAAGC 299 consensus_1840#1 GTTTCTNCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCNGTGCGTGGAGGANG------ 245 ****** ******************************** ************ * consensus_1840#0 GTGCGGCGGAGGTTGTGGTGGTGATGGTGAGGAGCGAGTTGTACAGGAGGAGGGGTACCG 359 consensus_1840#1 ------------------------------------------------------------ consensus_1840#0 ATCAACCGGGAAGCTGGCGGTCGGGAAGTGGTGAGAGCGGCCAGATGACACGCCCATGTC 419 consensus_1840#1 ------------------------------------------------------------ consensus_1840#0 CGTGATGTACCCTGGCGGAGGCGGCTGGGGCGCCGGTCGCTCACGGAAGTTCCACCCTTT 479 consensus_1840#1 ------------------------------------------------------------ consensus_1840#0 GCTCCGACCGGAGAAACCGCCGCCGCTGGTACCGATGTCGCCCGACACCCCTGGCCAAGA 539 consensus_1840#1 ------------------------------------------------------------ consensus_1840#0 TGCAACCATCCTACATTGTCCCCCCACAAGATCCCCCTGGCTCTACGAACACACCTGCCG 599 consensus_1840#1 ------------------------------------------------------------ consensus_1840#0 ATGATGCCACACCAGT 615 consensus_1840#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||