These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1359 fasta sequence [CACGCGCTCCCCTCGCACGCCACCGGACGAACACCTCGCCGACAACCTTTGCTCCGGCGACCGGAGGTCGGAGAGAGAGAAGAGAGATGAAGATGCCGGGGCGCCTGCTCGCCGCCGGAGCGGCGGCGCTGCTGGTGGCGGCGTCGGTGATGGTGGCGACGCTGCTGACGGCGCCGCTGCCGTTCCTGCCGTCGCTGATGCCGTGCCTGCCCGCGGTGACCGCGCCGTCGGGGTCCGGGTACTCGCCGCCGGGCCTCGCGGCCCTCGCCGACGCCGCCGTGAGGTACGCCACGACGCCGACCGTGCCGCAGCAGTCGCGCGCCGAGATCTCGCTGTCGCTGGCCGTGCTCCGCCGCCGCGCGCCGCTGCGGCTGCTGGTGTTCGGCCTGGGCCACGACTCGCCGCTGTGGCACGCGCTCAACCCGGGCGGCGCCACCGTGTTCCTCGAGGAGGACCCGTCCTGGTACAGCGTCGTGCGGGGCCAGTCGCCGTTCCTCCGCGGCCACCTCGTCGCCTACCGCACGCGCCTCGACCACGCCGACCGCCTCCTCGCCACCTACAAGGACCACCCCTCCTGCCTCCCCGGCGGCGGCGGCAATGGCGGCGGCGACGTGCCGCGCGTGCGGGGGAACGCGGAGTGCCCGCTGGCGCTGCACAACCTGCCGGCGGAGGTGTACGAGAAGGAGTGGGACATGGTGATGATCGACGCGCCCAAGGGGTACTTCGCGTCGGCGCCGGGGAGGATGGCGGCGGTGTGGACGGCGGCGGCCATGGCGCGCGGGCGGCGCGGCGAGGGCGACACCGACGTGTTCCTCCACGACGTCGACCGCCGCGTGGAGAAGGCCTACGCCGAGGAGTTCCTCTGCGAGAGGTTCCGCGTCGGCGCCACCGGCCGCCTCTGGCATTTCAGGATCCCGCCGGCGTCGCGCCGCGGGAACGGCACGGCGGCCGCCGGCGGCGCCGGCGCCGGCGATGGGCGGCGACCCTTCTGCTAAGGAAGTAAGGATTGCGATTTTTGGAGGGGCTTTTTTACAAAATGGCCTCGATTAAGCGGGTGAAATACAAATACTGCTACTACTACTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCTCTATCCTCTGCCACTTGCAAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCTAGAGAGTGATTTGAGTCTCTCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGTATCTCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTTGGTATGAGTACATACTAATTTTTGAATAACATTGGTACATCAG] [+] EMBL AK108872 [CACGCGCTCCCCTCGCACGCCACCGGACGAACACCTCGCCGACAACCTTTGCTCCGGCGACCGGAGGTCGGAGAGAGAGAAGAGAGATGAAGATGCCGGGGCGCCTGCTCGCCGCCGGAGCGGCGGCGCTGCTGGTGGCGGCGTCGGTGATGGTGGCGACGCTGCTGACGGCGCCGCTGCCGTTCCTGCCGTCGCTGATGCCGTGCCTGCCCGCGGTGACCGCGCCGTCGGGGTCCGGGTACTCGCCGCCGGGCCTCGCGGCCCTCGCCGACGCCGCCGTGAGGTACGCCACGACGCCGACCGTGCCGCAGCAGTCGCGCGCCGAGATCTCGCTGTCGCTGGCCGTGCTCCGCCGCCGCGCGCCGCTGCGGCTGCTGGTGTTCGGCCTGGGCCACGACTCGCCGCTGTGGCACGCGCTCAACCCGGGCGGCGCCACCGTGTTCCTCGAGGAGGACCCGTCCTGGTACAGCGTCGTGCGGGGCCAGTCGCCGTTCCTCCGCGGCCACCTCGTCGCCTACCGCACGCGCCTCGACCACGCCGACCGCCTCCTCGCCACCTACAAGGACCACCCCTCCTGCCTCCCCGGCGGCGGCGGCAATGGCGGCGGCGACGTGCCGCGCGTGCGGGGGAACGCGGAGTGCCCGCTGGCGCTGCACAACCTGCCGGCGGAGGTGTACGAGAAGGAGTGGGACATGGTGATGATCGACGCGCCCAAGGGGTACTTCGCGTCGGCGCCGGGGAGGATGGCGGCGGTGTGGACGGCGGCGGCCATGGCGCGCGGGCGGCGCGGCGAGGGCGACACCGACGTGTTCCTCCACGACGTCGACCGCCGCGTGGAGAAGGCCTACGCCGAGGAGTTCCTCTGCGAGAGGTTCCGCGTCGGCGCCACCGGCCGCCTCTGGCATTTCAGGATCCCGCCGGCGTCGCGCCGCGGGAACGGCACGGCGGCCGCCGGCGGCGCCGGCGCCGGCGATGGGCGGCGACCCTTCTGCTAAGGAAGTAAGGATTGCGATTTTTGGAGGGGCTTTTTTACAAAATGGCCTCGATTAAGCGGGTGAAATACAAATACTGCTACTACTACTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCTCTATCCTCTGCCACTTGCAAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCTAGAGAGTGATTTGAGTCTCTCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGTATCTCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTTGGTATGAGTACATACTAATTTTTGAATAACATTGGTACATCAG] consensusID : consensus_1846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [CCCGGNGCCCCGGGCCCCGGCAATGGGCGGCGACCCTTCTGCCTAGGAAGTAAGGATTGCGATTTTTGGAGGGGCTTTTTTACAAAATGGCCNCGATTAAGCGGGTGAAATACAAATACTGCTACTACTACTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCNCTANCCTCTGCCACTTGCAAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCTAGAGAGTGATTTGAGTCNCNCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGTATCNCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99607 [CCCGGNGCCCCGGGCCCCGGCAATGGGCGGCGACCCTTCTGCCTAGGAAGTAAGGATTGCGATTTTTGGAGGGGCTTTTTTACAAAATGGCCNCGATTAAGCGGGTGAAATACAAATACTGCTACTACTACTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCNCTANCCTCTGCCACTTGCAAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCTAGAGAGTGATTTGAGTCNCNCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGTATCNCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1846#0 CACGCGCTCCCCTCGCACGCCACCGGACGAACACCTCGCCGACAACCTTTGCTCCGGCGA 60 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 CCGGAGGTCGGAGAGAGAGAAGAGAGATGAAGATGCCGGGGCGCCTGCTCGCCGCCGGAG 120 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 CGGCGGCGCTGCTGGTGGCGGCGTCGGTGATGGTGGCGACGCTGCTGACGGCGCCGCTGC 180 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 CGTTCCTGCCGTCGCTGATGCCGTGCCTGCCCGCGGTGACCGCGCCGTCGGGGTCCGGGT 240 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 ACTCGCCGCCGGGCCTCGCGGCCCTCGCCGACGCCGCCGTGAGGTACGCCACGACGCCGA 300 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 CCGTGCCGCAGCAGTCGCGCGCCGAGATCTCGCTGTCGCTGGCCGTGCTCCGCCGCCGCG 360 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 CGCCGCTGCGGCTGCTGGTGTTCGGCCTGGGCCACGACTCGCCGCTGTGGCACGCGCTCA 420 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 ACCCGGGCGGCGCCACCGTGTTCCTCGAGGAGGACCCGTCCTGGTACAGCGTCGTGCGGG 480 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 GCCAGTCGCCGTTCCTCCGCGGCCACCTCGTCGCCTACCGCACGCGCCTCGACCACGCCG 540 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 ACCGCCTCCTCGCCACCTACAAGGACCACCCCTCCTGCCTCCCCGGCGGCGGCGGCAATG 600 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 GCGGCGGCGACGTGCCGCGCGTGCGGGGGAACGCGGAGTGCCCGCTGGCGCTGCACAACC 660 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 TGCCGGCGGAGGTGTACGAGAAGGAGTGGGACATGGTGATGATCGACGCGCCCAAGGGGT 720 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 ACTTCGCGTCGGCGCCGGGGAGGATGGCGGCGGTGTGGACGGCGGCGGCCATGGCGCGCG 780 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 GGCGGCGCGGCGAGGGCGACACCGACGTGTTCCTCCACGACGTCGACCGCCGCGTGGAGA 840 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 AGGCCTACGCCGAGGAGTTCCTCTGCGAGAGGTTCCGCGTCGGCGCCACCGGCCGCCTCT 900 consensus_1846#1 ------------------------------------------------------------ consensus_1846#0 GGCATTTCAGGATCCCGCCGGCGTCGCGCCGCGGGAACGGCACGGCGGCCGCCGGCGGCG 960 consensus_1846#1 --------------------------------------------------CCCGGNGCCC 10 **** * * consensus_1846#0 CCGGCGCCGGCGATGGGCGGCGACCCTTCTGCTAAGGAAGTAAGGATTGCGATTTTTGGA 1020 consensus_1846#1 CGGGCCCCGGCAATGGGCGGCGACCCTTCTGCCTAGGAAGTAAGGATTGCGATTTTTGGA 70 * *** ***** ******************** ************************** consensus_1846#0 GGGGCTTTTTTACAAAATGGCCTCGATTAAGCGGGTGAAATACAAATACTGCTACTACTA 1080 consensus_1846#1 GGGGCTTTTTTACAAAATGGCCNCGATTAAGCGGGTGAAATACAAATACTGCTACTACTA 130 ********************** ************************************* consensus_1846#0 CTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCTCTATCCTCTGCCACTTGC 1140 consensus_1846#1 CTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCNCTANCCTCTGCCACTTGC 190 ***************************************** *** ************** consensus_1846#0 AAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCT 1200 consensus_1846#1 AAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCT 250 ************************************************************ consensus_1846#0 AGAGAGTGATTTGAGTCTCTCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGT 1260 consensus_1846#1 AGAGAGTGATTTGAGTCNCNCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGT 310 ***************** * **************************************** consensus_1846#0 ATCTCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTTGGTA 1320 consensus_1846#1 ATCNCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTAAAAA 370 *** *************************************************** * consensus_1846#0 TGAGTACATACTAATTTTTGAATAACATTGGTACATCAG 1359 consensus_1846#1 ANAAAAAAAAAAAAAAAAAAAAAAAAA------------ 397 * * * * ** ** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||