cluster # 185

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Oryza sativa
cluster # 185 cluster # 185 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_185#0 length = 693 sequences # 1

consensus_185#1 length = 683 sequences # 1

consensusID : consensus_185#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [TTTTTTTTTTTTTTTACTAATCCAAGTATATATGTTCCCAGCTGCCTGTGCATGCATGTATTTGCGTGTATATACATGGCCGAGCATTGCGTAAAAATGATAAGCTAGCCAACTTACAAACTGCTTGTTTGCTTTGTCCATCATGAGTAAGTCTTGTGTACACATATAATCGCTAAAATACCATCAAACACATGCGCGAGCCAGTGCTGGCACCACCGTCCGCTGCGAGAGCTCCCCGCCTTCCTCCTTGATTTGTTTTCTCCCAAATCGAGCCAAGTCATCACCGCCTATACCAAGCAGATTACCAGCCTTCACAAGCCTGTTATCATGCTTGCAAGTCCACCGGTGGCAAGGTCTTGTTGTGTATGCGCCGGAAGTCGGTGGCACTAAGGGGTGGCTTTGGTGGTGAGGAGGATGTCGGTAGCAGCAGCAAGGTGTCATGTCCGGTATCACTCTGTTGGACCTTACGCACGGGCGTTGGCCCAGACTCAGACAGGCAGTGCAACTTCGGATAGGCGACACCAGTGTGACATGACCTCAAAGCACCTCCTTCACCTGGAGTACTTGCTCAACGACCGGTGCTTTCGGAGCTTGCTGAAGATGATGATTTTGGTTTCCGCAGGGAATCAGCTTGTTATCGATGGGATATTGATCTGGTACCACGGGTATCTTGGATGGGTATCAGCTGATCAT]

[+] EMBL CA760848             [TTTTTTTTTTTTTTTACTAATCCAAGTATATATGTTCCCAGCTGCCTGTGCATGCATGTATTTGCGTGTATATACATGGCCGAGCATTGCGTAAAAATGATAAGCTAGCCAACTTACAAACTGCTTGTTTGCTTTGTCCATCATGAGTAAGTCTTGTGTACACATATAATCGCTAAAATACCATCAAACACATGCGCGAGCCAGTGCTGGCACCACCGTCCGCTGCGAGAGCTCCCCGCCTTCCTCCTTGATTTGTTTTCTCCCAAATCGAGCCAAGTCATCACCGCCTATACCAAGCAGATTACCAGCCTTCACAAGCCTGTTATCATGCTTGCAAGTCCACCGGTGGCAAGGTCTTGTTGTGTATGCGCCGGAAGTCGGTGGCACTAAGGGGTGGCTTTGGTGGTGAGGAGGATGTCGGTAGCAGCAGCAAGGTGTCATGTCCGGTATCACTCTGTTGGACCTTACGCACGGGCGTTGGCCCAGACTCAGACAGGCAGTGCAACTTCGGATAGGCGACACCAGTGTGACATGACCTCAAAGCACCTCCTTCACCTGGAGTACTTGCTCAACGACCGGTGCTTTCGGAGCTTGCTGAAGATGATGATTTTGGTTTCCGCAGGGAATCAGCTTGTTATCGATGGGATATTGATCTGGTACCACGGGTATCTTGGATGGGTATCAGCTGATCAT]




>consensus_185#0
TTTTTTTTTTTTTTTACTAATCCAAGTATATATGTTCCCAGCTGCCTGTGCATGCATGTA
TTTGCGTGTATATACATGGCCGAGCATTGCGTAAAAATGATAAGCTAGCCAACTTACAAA
CTGCTTGTTTGCTTTGTCCATCATGAGTAAGTCTTGTGTACACATATAATCGCTAAAATA
CCATCAAACACATGCGCGAGCCAGTGCTGGCACCACCGTCCGCTGCGAGAGCTCCCCGCC
TTCCTCCTTGATTTGTTTTCTCCCAAATCGAGCCAAGTCATCACCGCCTATACCAAGCAG
ATTACCAGCCTTCACAAGCCTGTTATCATGCTTGCAAGTCCACCGGTGGCAAGGTCTTGT
TGTGTATGCGCCGGAAGTCGGTGGCACTAAGGGGTGGCTTTGGTGGTGAGGAGGATGTCG
GTAGCAGCAGCAAGGTGTCATGTCCGGTATCACTCTGTTGGACCTTACGCACGGGCGTTG
GCCCAGACTCAGACAGGCAGTGCAACTTCGGATAGGCGACACCAGTGTGACATGACCTCA
AAGCACCTCCTTCACCTGGAGTACTTGCTCAACGACCGGTGCTTTCGGAGCTTGCTGAAG
ATGATGATTTTGGTTTCCGCAGGGAATCAGCTTGTTATCGATGGGATATTGATCTGGTAC
CACGGGTATCTTGGATGGGTATCAGCTGATCAT

consensusID : consensus_185#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [TTTTTTTTTTTTTTTTATTGGTTAATTATACATGCACATATACTAATCCAAGTATATATATTCCCAGCTGCCTGTGCATGCATGTATTTGCGTGTATATACATGGCCGAGCATTGCGTAAAAATGATAAGCTAGCCAACTTACAAACTGCTTGTTTGCTTTGTCCATCATGAGTAAGTCTTGTGTACACATATAATCGCTAAAATACCATCAAACACATGCGCGAGCCGGTGCTGGCACCACCGTCCGCTGCGAGAGCTCCCCGCCTTCCTCCTTGATTTGTTTTCTCCCAAATCGAGCCAAGTCATCACCGCCTATACCAAGCAGATTACCAGCCTTCACAAGCCTGTTATCATGCTTGCAAGTCCACCGGTGGCAAGGTCTTGTTGTGTATGCGCCGGAAGTCGGTGGCACTAAGGGGTGGCTTTGGTGGTGAGGAGGATGTCGGTAGCAGCAGCAAGGTGTCATGTCCGGTATCAGTTTGTTGGACCTTACGCACGGGCGTTGGCCTAGACTCAAACAGGCAGTGCAACTTTGGATAGGCGACACCAGTGGGACATGACCTCAAGCCCCTCCTTCACCTGGAGTACTTGTCTAATGACCGGGGCTTTCGGAGCTTGCTGAAAATAATGAATTTGGTTTCGGAGGGAATCACTTGTTATCGAGGGAATTTGATCTGGACCA]

[+] EMBL CA761166             [TTTTTTTTTTTTTTTTATTGGTTAATTATACATGCACATATACTAATCCAAGTATATATATTCCCAGCTGCCTGTGCATGCATGTATTTGCGTGTATATACATGGCCGAGCATTGCGTAAAAATGATAAGCTAGCCAACTTACAAACTGCTTGTTTGCTTTGTCCATCATGAGTAAGTCTTGTGTACACATATAATCGCTAAAATACCATCAAACACATGCGCGAGCCGGTGCTGGCACCACCGTCCGCTGCGAGAGCTCCCCGCCTTCCTCCTTGATTTGTTTTCTCCCAAATCGAGCCAAGTCATCACCGCCTATACCAAGCAGATTACCAGCCTTCACAAGCCTGTTATCATGCTTGCAAGTCCACCGGTGGCAAGGTCTTGTTGTGTATGCGCCGGAAGTCGGTGGCACTAAGGGGTGGCTTTGGTGGTGAGGAGGATGTCGGTAGCAGCAGCAAGGTGTCATGTCCGGTATCAGTTTGTTGGACCTTACGCACGGGCGTTGGCCTAGACTCAAACAGGCAGTGCAACTTTGGATAGGCGACACCAGTGGGACATGACCTCAAGCCCCTCCTTCACCTGGAGTACTTGTCTAATGACCGGGGCTTTCGGAGCTTGCTGAAAATAATGAATTTGGTTTCGGAGGGAATCACTTGTTATCGAGGGAATTTGATCTGGACCA]




>consensus_185#1
TTTTTTTTTTTTTTTTATTGGTTAATTATACATGCACATATACTAATCCAAGTATATATA
TTCCCAGCTGCCTGTGCATGCATGTATTTGCGTGTATATACATGGCCGAGCATTGCGTAA
AAATGATAAGCTAGCCAACTTACAAACTGCTTGTTTGCTTTGTCCATCATGAGTAAGTCT
TGTGTACACATATAATCGCTAAAATACCATCAAACACATGCGCGAGCCGGTGCTGGCACC
ACCGTCCGCTGCGAGAGCTCCCCGCCTTCCTCCTTGATTTGTTTTCTCCCAAATCGAGCC
AAGTCATCACCGCCTATACCAAGCAGATTACCAGCCTTCACAAGCCTGTTATCATGCTTG
CAAGTCCACCGGTGGCAAGGTCTTGTTGTGTATGCGCCGGAAGTCGGTGGCACTAAGGGG
TGGCTTTGGTGGTGAGGAGGATGTCGGTAGCAGCAGCAAGGTGTCATGTCCGGTATCAGT
TTGTTGGACCTTACGCACGGGCGTTGGCCTAGACTCAAACAGGCAGTGCAACTTTGGATA
GGCGACACCAGTGGGACATGACCTCAAGCCCCTCCTTCACCTGGAGTACTTGTCTAATGA
CCGGGGCTTTCGGAGCTTGCTGAAAATAATGAATTTGGTTTCGGAGGGAATCACTTGTTA
TCGAGGGAATTTGATCTGGACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_185#0      --------------------------TTTTTTTTTTTTTTTACTAATCCAAGTATATATG 34
consensus_185#1      TTTTTTTTTTTTTTTTATTGGTTAATTATACATGCACATATACTAATCCAAGTATATATA 60
                                               * *   *     * ******************* 

consensus_185#0      TTCCCAGCTGCCTGTGCATGCATGTATTTGCGTGTATATACATGGCCGAGCATTGCGTAA 94
consensus_185#1      TTCCCAGCTGCCTGTGCATGCATGTATTTGCGTGTATATACATGGCCGAGCATTGCGTAA 120
                     ************************************************************

consensus_185#0      AAATGATAAGCTAGCCAACTTACAAACTGCTTGTTTGCTTTGTCCATCATGAGTAAGTCT 154
consensus_185#1      AAATGATAAGCTAGCCAACTTACAAACTGCTTGTTTGCTTTGTCCATCATGAGTAAGTCT 180
                     ************************************************************

consensus_185#0      TGTGTACACATATAATCGCTAAAATACCATCAAACACATGCGCGAGCCAGTGCTGGCACC 214
consensus_185#1      TGTGTACACATATAATCGCTAAAATACCATCAAACACATGCGCGAGCCGGTGCTGGCACC 240
                     ************************************************ ***********

consensus_185#0      ACCGTCCGCTGCGAGAGCTCCCCGCCTTCCTCCTTGATTTGTTTTCTCCCAAATCGAGCC 274
consensus_185#1      ACCGTCCGCTGCGAGAGCTCCCCGCCTTCCTCCTTGATTTGTTTTCTCCCAAATCGAGCC 300
                     ************************************************************

consensus_185#0      AAGTCATCACCGCCTATACCAAGCAGATTACCAGCCTTCACAAGCCTGTTATCATGCTTG 334
consensus_185#1      AAGTCATCACCGCCTATACCAAGCAGATTACCAGCCTTCACAAGCCTGTTATCATGCTTG 360
                     ************************************************************

consensus_185#0      CAAGTCCACCGGTGGCAAGGTCTTGTTGTGTATGCGCCGGAAGTCGGTGGCACTAAGGGG 394
consensus_185#1      CAAGTCCACCGGTGGCAAGGTCTTGTTGTGTATGCGCCGGAAGTCGGTGGCACTAAGGGG 420
                     ************************************************************

consensus_185#0      TGGCTTTGGTGGTGAGGAGGATGTCGGTAGCAGCAGCAAGGTGTCATGTCCGGTATCACT 454
consensus_185#1      TGGCTTTGGTGGTGAGGAGGATGTCGGTAGCAGCAGCAAGGTGTCATGTCCGGTATCAGT 480
                     ********************************************************** *

consensus_185#0      CTGTTGGACCTTACGCACGGGCGTTGGCCCAGACTCAGACAGGCAGTGCAACTTCGGATA 514
consensus_185#1      TTGTTGGACCTTACGCACGGGCGTTGGCCTAGACTCAAACAGGCAGTGCAACTTTGGATA 540
                      **************************** ******* **************** *****

consensus_185#0      GGCGACACCAGTGTGACATGACCTCAAAGCACCTCCTTCACCTGGAGTACTTGCTCAACG 574
consensus_185#1      GGCGACACCAGTGGGACATGACCTCAA-GCCCCTCCTTCACCTGGAGTACTTGTCTAATG 599
                     ************* ************* ** **********************   ** *

consensus_185#0      ACCGGTGCTTTCGGAGCTTGCTGAAGATGATGATTTTGGTTTCCGCAGGGAATCAGCTTG 634
consensus_185#1      ACCGGGGCTTTCGGAGCTTGCTGAAAATAATGAATTTGGTTTC-GGAGGGAATCA-CTTG 657
                     ***** ******************* ** **** ********* * ********* ****

consensus_185#0      TTATCGATGGGATATTGATCTGGTACCACGGGTATCTTGGATGGGTATCAGCTGATCAT 693
consensus_185#1      TTATCGAGGGAAT-TTGATCTGG-ACCA------------------------------- 683
                     ******* ** ** ********* ****