Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1853 cluster # 1853       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1853#0 length = 1947 sequences # 2  

consensusID : consensus_1853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1947
fasta sequence
                              [AAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCTTGCGCCAAGACGAGTCGCGGCAGCCGATGGCGAGCAGAGCAGTGGAGGGGGAAGGGGAGGGGGAGGAGGAGGGGGAGGGGAAGGGTAACCTGGCTAATGCACCGGAAGACAGTCACAAGCATTGCCAAGGAGAAGAATTAGAAGCTGGCCAGTCTTGCAAGATAAATTATCAAGACATCATGGACAAGTGCGGTATTGAAATATCTGAAAAAAGAAGGCGGCGATGGTCAACAAAGGAGGATGAGTCACTTATTCAAATGATTAACATATATGGGCATAACAACTGGGAAACTGTTGCACGCGCTATACCTGGTCGAAATGCACAACAATGCAGAGTAAGGTGGAAATTCAATCTAGACCCTGCAATCAGCAAACAGGCGTGGTCACGAGAGGAGGAGCTAAGATTGATTCATGTCCAACAAATTTTTGGAAATAAGTGGTGTAGAATGGCTGAACATTTCACAGGGAGGACAAGTGCTGCAATCAAAGAACACTGGAGAGGTCCTATGAAAAGAAAATTAAATTCGTATTTAGCTTCAGGATTGCTCAAAAAATCTCCTGGTCTGCCTGAAAATCTATCAGTTTCGCAGAGTAGTGACTCAAATATTCTTCAGCAGTGTGATGTTTCATCTGATGAGAATAAACTGTTATCAGATTTACGACCAAGCCTAAAATCTAAAGAAGGGGTGAGCTCAAAATGTGATGGTTCATCTTCTGATAATCAACTGTTATCAGATTTACGAGCAAGCCTAAAATCTAAAGGGGCAAGCTCAAAGTGTGATGGTTCATCTGGTGATAATCAACTGTTATCAGATTTACGAGCAAGCCTAAAATCTAAAGGGGCAAGCTCAAAGTGTGATGGTTCATCTGGTGATAATCAACTGTTATCAGATTTACGAGCAAGCTTAAAATCTAAAGGGGCAAGCTCAAAATGTGATGGTTCATCTGATGAGAATAAACTATTATCAGATTTACGAGCATGCTTAAAATCTAAACAAGGGGCAAGCTCAAAATGTGATGGTTCATCTGGTGAGAATCAGTTGTTATCAGATTTACAAGCAAGTTTAATGTCTAAACAAAGAACAAGCTCAAAATATAAACAAGGGGCAAGCTCCAAATATAAACAAGGGGCAAGCTCCAAATCTAAACAAGGGACAAGCTCAAAGTCTAAACAAGGGTTCATAGACCTATGTGAAAATACTGATACATCAGAAGGAGAAAGTTCTGAGTTGATATGTACAGAAAGACCAGATCCTGATTCAGGTGAAGCTTCTCAGAGGATAAGGGATAGATTGAATTGGCGTAAAAGAGCAAGGAAGAAGCTGGTTTTCCTGTCAAGCCCGGTGGAGCTCAAGGTGTCTGCTGTGGCAGAATCTGAAAGGCACTTACAGGAAAGTAAAGAAATGAGTCCAGAAGTTAACATCGTTTCTCCACCAGCTGTACTCCAAGGTTTTTCACCAGAAGTTCCATCAGTATGTGAAAAGATTGTCGAACCACCACTGGCTGATTTCAACCAAGCTAAGAATGTTTGTTCTTTGGAGACCTCCTCAGACCCATGCACACTGGAGCAACATCTGGCGAATGTCTCAGATCTTCTAGACATGTCATACATCGATGGCTTGATGATCATTCCTCCTTCAGGTTGCCCATACGATGGTGATTTCATATGAGACATGAAAGGGGCACAGACAAGTAGACCGCGCTGGTATTGCACTAGCAATCCATTGTAAAAAAAAACAAGAAAACCGCTATGCTGCTGTGCATCTTTTGATGAACTTACATAGTTCCTGTCTAATTATCTTTGCATTAGATCAAGAACCTATCTCGAAAAGAGCTAGCAATGTTGTTCTGTTAGCAATGTTGTCCTGTG-CTGC-ATCTTTTGACCCTCCATAGGTACAATATATGAGCATG]

[+] EMBL AK120913             [AAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCTTGCGCCAAGACGAGTCGCGGCAGCCGATGGCGAGCAGAGCAGTGGAGGGGGAAGGGGAGGGGGAGGAGGAGGGGGAGGGGAAGGGTAACCTGGCTAATGCACCGGAAGACAGTCACAAGCATTGCCAAGGAGAAGAATTAGAAGCTGGCCAGTCTTGCAAGATAAATTATCAAGACATCATGGACAAGTGCGGTATTGAAATATCTGAAAAAAGAAGGCGGCGATGGTCAACAAAGGAGGATGAGTCACTTATTCAAATGATTAACATATATGGGCATAACAACTGGGAAACTGTTGCACGCGCTATACCTGGTCGAAATGCACAACAATGCAGAGTAAGGTGGAAATTCAATCTAGACCCTGCAATCAGCAAACAGGCGTGGTCACGAGAGGAGGAGCTAAGATTGATTCATGTCCAACAAATTTTTGGAAATAAGTGGTGTAGAATGGCTGAACATTTCACAGGGAGGACAAGTGCTGCAATCAAAGAACACTGGAGAGGTCCTATGAAAAGAAAATTAAATTCGTATTTAGCTTCAGGATTGCTCAAAAAATCTCCTGGTCTGCCTGAAAATCTATCAGTTTCGCAGAGTAGTGACTCAAATATTCTTCAGCAGTGTGATGTTTCATCTGATGAGAATAAACTGTTATCAGATTTACGACCAAGCCTAAAATCTAAAGAAGGGGTGAGCTCAAAATGTGATGGTTCATCTTCTGATAATCAACTGTTATCAGATTTACGAGCAAGCCTAAAATCTAAAGGGGCAAGCTCAAAGTGTGATGGTTCATCTGGTGATAATCAACTGTTATCAGATTTACGAGCAAGCCTAAAATCTAAAGGGGCAAGCTCAAAGTGTGATGGTTCATCTGGTGATAATCAACTGTTATCAGATTTACGAGCAAGCTTAAAATCTAAAGGGGCAAGCTCAAAATGTGATGGTTCATCTGATGAGAATAAACTATTATCAGATTTACGAGCATGCTTAAAATCTAAACAAGGGGCAAGCTCAAAATGTGATGGTTCATCTGGTGAGAATCAGTTGTTATCAGATTTACAAGCAAGTTTAATGTCTAAACAAAGAACAAGCTCAAAATATAAACAAGGGGCAAGCTCCAAATATAAACAAGGGGCAAGCTCCAAATCTAAACAAGGGACAAGCTCAAAGTCTAAACAAGGGTTCATAGACCTATGTGAAAATACTGATACATCAGAAGGAGAAAGTTCTGAGTTGATATGTACAGAAAGACCAGATCCTGATTCAGGTGAAGCTTCTCAGAGGATAAGGGATAGATTGAATTGGCGTAAAAGAGCAAGGAAGAAGCTGGTTTTCCTGTCAAGCCCGGTGGAGCTCAAGGTGTCTGCTGTGGCAGAATCTGAAAGGCACTTACAGGAAAGTAAAGAAATGAGTCCAGAAGTTAACATCGTTTCTCCACCAGCTGTACTCCAAGGTTTTTCACCAGAAGTTCCATCAGTATGTGAAAAGATTGTCGAACCACCACTGGCTGATTTCAACCAAGCTAAGAATGTTTGTTCTTTGGAGACCTCCTCAGACCCATGCACACTGGAGCAACATCTGGCGAATGTCTCAGATCTTCTAGACATGTCATACATCGATGGCTTGATGATCATTCCTCCTTCAGGTTGCCCATACGATGGTGATTTCATATGAGACATGAAAGGGGCACAGACAAGTAGACCGCGCTGGTATTGCACTAGCAATCCATTGTAAAAAAAAACAAGAAAACCGCTATGCTGCTGTGCATCTTTTGATGAACTTACATAGTTCCTGTCTAATTATCTTTGCATTAGATCAAGAACCTATCTCGAAAAGAGCTAGCAATGTTGTTCTGTTAGCAATGTTGTCCTGTG CTGC ATCTTTTGACCCTCCATAGGTACAATATATGAGCATG]
[+] EMBL AU066161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCAGACCCATGCACACTGGAGCAACATCTGGCGAATGTCTCAGATCTTCTAGACATGTCATACATCGATGGCTTGATGATCATTCCTCCTTCAGGTTGCCCATACGATGGTGATTTCATATGAGACATGAAAGGGGCACAGACAAGTAGACCGCGCTGGTATTGCACTAGCAATCCATTGTAAAAAAAAACAAGAAAACCGCTATGCTGCTGTG ATCTTTTGATGAACTTACATAGTTCCTGTCTAATTATCTTTGCATTAGATCAAGAACCTATCTCGAAAAGAGCTAGCAATGTTGTTCTGTTAGCAATGTTGTCCTGTGCCTGCAATTTTTTGACCCTCCANNGGTcc              ]


>consensus_1853#0 AAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCTTGCGCCAAGACGAGTCGCGGCAGC CGATGGCGAGCAGAGCAGTGGAGGGGGAAGGGGAGGGGGAGGAGGAGGGGGAGGGGAAGG GTAACCTGGCTAATGCACCGGAAGACAGTCACAAGCATTGCCAAGGAGAAGAATTAGAAG CTGGCCAGTCTTGCAAGATAAATTATCAAGACATCATGGACAAGTGCGGTATTGAAATAT CTGAAAAAAGAAGGCGGCGATGGTCAACAAAGGAGGATGAGTCACTTATTCAAATGATTA ACATATATGGGCATAACAACTGGGAAACTGTTGCACGCGCTATACCTGGTCGAAATGCAC AACAATGCAGAGTAAGGTGGAAATTCAATCTAGACCCTGCAATCAGCAAACAGGCGTGGT CACGAGAGGAGGAGCTAAGATTGATTCATGTCCAACAAATTTTTGGAAATAAGTGGTGTA GAATGGCTGAACATTTCACAGGGAGGACAAGTGCTGCAATCAAAGAACACTGGAGAGGTC CTATGAAAAGAAAATTAAATTCGTATTTAGCTTCAGGATTGCTCAAAAAATCTCCTGGTC TGCCTGAAAATCTATCAGTTTCGCAGAGTAGTGACTCAAATATTCTTCAGCAGTGTGATG TTTCATCTGATGAGAATAAACTGTTATCAGATTTACGACCAAGCCTAAAATCTAAAGAAG GGGTGAGCTCAAAATGTGATGGTTCATCTTCTGATAATCAACTGTTATCAGATTTACGAG CAAGCCTAAAATCTAAAGGGGCAAGCTCAAAGTGTGATGGTTCATCTGGTGATAATCAAC TGTTATCAGATTTACGAGCAAGCCTAAAATCTAAAGGGGCAAGCTCAAAGTGTGATGGTT CATCTGGTGATAATCAACTGTTATCAGATTTACGAGCAAGCTTAAAATCTAAAGGGGCAA GCTCAAAATGTGATGGTTCATCTGATGAGAATAAACTATTATCAGATTTACGAGCATGCT TAAAATCTAAACAAGGGGCAAGCTCAAAATGTGATGGTTCATCTGGTGAGAATCAGTTGT TATCAGATTTACAAGCAAGTTTAATGTCTAAACAAAGAACAAGCTCAAAATATAAACAAG GGGCAAGCTCCAAATATAAACAAGGGGCAAGCTCCAAATCTAAACAAGGGACAAGCTCAA AGTCTAAACAAGGGTTCATAGACCTATGTGAAAATACTGATACATCAGAAGGAGAAAGTT CTGAGTTGATATGTACAGAAAGACCAGATCCTGATTCAGGTGAAGCTTCTCAGAGGATAA GGGATAGATTGAATTGGCGTAAAAGAGCAAGGAAGAAGCTGGTTTTCCTGTCAAGCCCGG TGGAGCTCAAGGTGTCTGCTGTGGCAGAATCTGAAAGGCACTTACAGGAAAGTAAAGAAA TGAGTCCAGAAGTTAACATCGTTTCTCCACCAGCTGTACTCCAAGGTTTTTCACCAGAAG TTCCATCAGTATGTGAAAAGATTGTCGAACCACCACTGGCTGATTTCAACCAAGCTAAGA ATGTTTGTTCTTTGGAGACCTCCTCAGACCCATGCACACTGGAGCAACATCTGGCGAATG TCTCAGATCTTCTAGACATGTCATACATCGATGGCTTGATGATCATTCCTCCTTCAGGTT GCCCATACGATGGTGATTTCATATGAGACATGAAAGGGGCACAGACAAGTAGACCGCGCT GGTATTGCACTAGCAATCCATTGTAAAAAAAAACAAGAAAACCGCTATGCTGCTGTGCAT CTTTTGATGAACTTACATAGTTCCTGTCTAATTATCTTTGCATTAGATCAAGAACCTATC TCGAAAAGAGCTAGCAATGTTGTTCTGTTAGCAATGTTGTCCTGTGCTGCATCTTTTGAC CCTCCATAGGTACAATATATGAGCATG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)