These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [CCGGTGACAAATAAGTTCATACAAGATCTGTCCATTTTTCTTGTTGAAAATAGGAGAAAGGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTTTCAGTCAAAGTATGTGCCCACTGGAGGCATTGATGTTATCTGTTGACCAAATTCAAGTTCATTTCTCTATCACACCGAAAGGACAGAAAAGAAGTTGCTCCACGCTGGGAGTTCTGCTGTCTTAAATGGTCTGTTACNAATCTTCAACAAAATTCTCTGCTTGAAATTGGATCACCAAATAGCATCTCTGTTTTGAAAAATTGCACTAGATGCNCAGTAGGAGTTAGAAGTCCCATCCTCAGTAAAAAAAAAA] [+] EMBL BM420958 [CCGGTGACAAATAAGTTCATACAAGATCTGTCCATTTTTCTTGTTGAAAATAGGAGAAAGGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTTTCAGTCAAAGTATGTGCCCACTGGAGGCATTGATGTTATCTGTTGACCAAATTCAAGTTCATTTCTCTATCACACCGAAAGGACAGAAAAGAAGTTGCTCCACGCTGGGAGTTCTGCTGTCTTAAATGGTCTGTTACNAATCTTCAACAAAATTCTCTGCTTGAAATTGGATCACCAAATAGCATCTCTGTTTTGAAAAATTGCACTAGATGCNCAGTAGGAGTTAGAAGTCCCATCCTCAGTAAAAAAAAAA] consensusID : consensus_1858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [CCGGTGACCAAATAAGTTCATACCAGATCTGTCCCTTTTTCTTGTTGAAAATAGGAGAAAGGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTTTCAGTCCAAGTATGTCCCCTGGAGGCATTATTTATCTTTGACCAAATTCAAGTTCATTTCTCTATCAACCGAAAGGACCAGAAAAGAAGTTGCTCCNGCTGGGAGTTCTCTGTTTAAATGGTCTTTACCAATCTTCAACCAAATTCTCTGCTTAAATTTATCAACCAAATACCCATCTCTGTTTTGAAAAAGTTGCCNCTAGATGCCACCACGGTTAAGGGAGTTAGAAGTCCCCTCCCCAGGTTAA] [+] EMBL BM038106 [CCGGTGACCAAATAAGTTCATACCAGATCTGTCCCTTTTTCTTGTTGAAAATAGGAGAAAGGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTTTCAGTCCAAGTATGTCCCCTGGAGGCATTATTTATCTTTGACCAAATTCAAGTTCATTTCTCTATCAACCGAAAGGACCAGAAAAGAAGTTGCTCCNGCTGGGAGTTCTCTGTTTAAATGGTCTTTACCAATCTTCAACCAAATTCTCTGCTTAAATTTATCAACCAAATACCCATCTCTGTTTTGAAAAAGTTGCCNCTAGATGCCACCACGGTTAAGGGAGTTAGAAGTCCCCTCCCCAGGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1858#0 CCGGTGAC-AAATAAGTTCATACAAGATCTGTCCATTTTTCTTGTTGAAAATAGGAGAAA 59 consensus_1858#1 CCGGTGACCAAATAAGTTCATACCAGATCTGTCCCTTTTTCTTGTTGAAAATAGGAGAAA 60 ******** ************** ********** ************************* consensus_1858#0 GGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTT 119 consensus_1858#1 GGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTT 120 ************************************************************ consensus_1858#0 TCAGTCAAAGTATGTGCCCACTGGAGGCATTGATGTTATCTGTTGACCAAATTCAAGTTC 179 consensus_1858#1 TCAGTCCAAGTATGT--CCCCTGGAGGCATTATT--TATCT-TTGACCAAATTCAAGTTC 175 ****** ******** ** *********** * ***** ****************** consensus_1858#0 ATTTCTCTATCACACCGAAAGGAC-AGAAAAGAAGTTGCTCCACGCTGGGAGTTCTGCTG 238 consensus_1858#1 ATTTCTCTATCA-ACCGAAAGGACCAGAAAAGAAGTTGCTCCN-GCTGGGAGTTCT-CTG 232 ************ *********** ***************** ************ *** consensus_1858#0 TCTTAAATGGTCTGTTACNAATCTTCAACAAAATTCTCTGCTTGAAATTGGATCACCAAA 298 consensus_1858#1 T-TTAAATGGTCT-TTACCAATCTTCAACCAAATTCTCTGCTT-AAATTTATCAACCAAA 289 * *********** **** ********** ************* ***** ****** consensus_1858#0 TAGC-ATCTCTGTTTTGAAAAA-TTGC-ACTAGATGCN----CAGT---AGGAGTTAGAA 348 consensus_1858#1 TACCCATCTCTGTTTTGAAAAAGTTGCCNCTAGATGCCACCACGGTTAAGGGAGTTAGAA 349 ** * ***************** **** ******** * ** ********** consensus_1858#0 GTCCCATCCTCAGTAAAAAAAAAA 372 consensus_1858#1 GTCCCCTCCCCAGGTTAA------ 367 ***** *** *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||