These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1644 fasta sequence [TCAATTGGCGAACGGCGACGGCGGCGGCGACCTGGTGGCCAGTTGGCACCTTGTCGATTTCCTTCCAACCTACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTTAGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTGCATATTTGAGTGGAATTGAGATCAGAGGTGGCCTGGCCAGCCGAGGTCGCGACCGATGTGCTTGCAATCAGCGGCAAAGTGGAAGCTAGAGCAGCCGGATGTCAGCGAGAGCATGCACTGCCTCAATCATGAGCTTGCATCGCCGAGCTTAATTCGGAGTCTGCCATCAACATAGGTCATCTTTCCTAACCAACCTCAATTTGTTTACTTGGTCCACATCTTTGGCTTCGTACCTCAAGTTTGATGTAATTCCTTCATTTATGCGCCGGTTAAGTTATTGCTTGGTTTGCTCTTGTTATTAATGAATTCTTACTATTTATATGAGCATCTTACATGACAAATGCAGATTGCTACTTACTTTGTCTAGGTATATTCACAAGGTCATTTTTCTTAAAAGTTGAATTGTTCCCTCTAAATGAAGGCTTATTCAACCTATAGGAATAAGTTTTTAAAAGTTGAATTGTTCCCTAGCCTGAAGCAAATCTCTTTCCTGTTTGAACTCTACAGGAATGAGCAGTAATGAGGCTTGAAGGTGATACAGTTATCGACTTGAAATTGTAGTCGGATAAAGTATTTGATTATTTGCCTCCACATTTGATTCGTATATATTAGTTTAACAAATACATAATTGAAAGTGAAGGATCTGACCTATAACTGACGCCTAATGGTAGGCATTTAAAGGAATCTGAAATTGTAACTAACTTTCTTTTGTACGAAAGAATTCAAATACATAAATGTGCAGATGCAGCGAGGCTTTTTCAGAAACAAATATGATTCTTACTGTTAAAATATCCTCTACCTGGCAGACATCTAAGGAAGTGTACTCATTTGAATTCTGATTTTGCTTTTTCTCAGGGTTGTTTCATGTTCTAAAGAGTGTCATCTGCAATGCGATAGCTTTAGAGAGATGAAAGTCCAATTATGCTAGATTATCAGTTTTTTTGCAAGGATGCTAGAATATCACTTTGACTTGTTTGGTACTGTCCAATGCCAATAGTGGCAATGAAGACAACTCTTTATACATCATCAGAGGAAATGCTGACTCCATTATTTGTGATAGAAAATGTTAAACATGGTGGAAGCAGGGGAGTAGAATGTGGAGCAAATATAAATATATTTTGAAGCTAGGCAGGCCATGAGGGTGCTCATACAAATTTCTATACTCTAGCTAGCGCTGGAATGGTCCTACTTCTTTCATTTACAACATATCAGCTTGGTTTCCCATTTGGACTTAAAACTGTAAATATGGCAAGCATGTAGATAAAGTTGATCCTACATGCATGCCACAACTTATCAGACATACCGTCTGCATACTCTGATTGTACATTCATGTCCATACAGGGGAGTAAGTTCGGTAAATTCATCTTAGTGAACAGAACATTTGTGCATTTCATTCAATTTTTTGTTTTGTGGTGATGAGAAGACTATGTCATTTGTTATTCTTCTATAAGAAAATAATTTGTT] [+] EMBL AK064422 [TCAATTGGCGAACGGCGACGGCGGCGGCGACCTGGTGGCCAGTTGGCACCTTGTCGATTTCCTTCCAACCTACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTTAGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTGCATATTTGAGTGGAATTGAGATCAGAGGTGGCCTGGCCAGCCGAGGTCGCGACCGATGTGCTTGCAATCAGCGGCAAAGTGGAAGCTAGAGCAGCCGGATGTCAGCGAGAGCATGCACTGCCTCAATCATGAGCTTGCATCGCCGAGCTTAATTCGGAGTCTGCCATCAACATAGGTCATCTTTCCTAACCAACCTCAATTTGTTTACTTGGTCCACATCTTTGGCTTCGTACCTCAAGTTTGATGTAATTCCTTCATTTATGCGCCGGTTAAGTTATTGCTTGGTTTGCTCTTGTTATTAATGAATTCTTACTATTTATATGAGCATCTTACATGACAAATGCAGATTGCTACTTACTTTGTCTAGGTATATTCACAAGGTCATTTTTCTTAAAAGTTGAATTGTTCCCTCTAAATGAAGGCTTATTCAACCTATAGGAATAAGTTTTTAAAAGTTGAATTGTTCCCTAGCCTGAAGCAAATCTCTTTCCTGTTTGAACTCTACAGGAATGAGCAGTAATGAGGCTTGAAGGTGATACAGTTATCGACTTGAAATTGTAGTCGGATAAAGTATTTGATTATTTGCCTCCACATTTGATTCGTATATATTAGTTTAACAAATACATAATTGAAAGTGAAGGATCTGACCTATAACTGACGCCTAATGGTAGGCATTTAAAGGAATCTGAAATTGTAACTAACTTTCTTTTGTACGAAAGAATTCAAATACATAAATGTGCAGATGCAGCGAGGCTTTTTCAGAAACAAATATGATTCTTACTGTTAAAATATCCTCTACCTGGCAGACATCTAAGGAAGTGTACTCATTTGAATTCTGATTTTGCTTTTTCTCAGGGTTGTTTCATGTTCTAAAGAGTGTCATCTGCAATGCGATAGCTTTAGAGAGATGAAAGTCCAATTATGCTAGATTATCAGTTTTTTTGCAAGGATGCTAGAATATCACTTTGACTTGTTTGGTACTGTCCAATGCCAATAGTGGCAATGAAGACAACTCTTTATACATCATCAGAGGAAATGCTGACTCCATTATTTGTGATAGAAAATGTTAAACATGGTGGAAGCAGGGGAGTAGAATGTGGAGCAAATATAAATATATTTTGAAGCTAGGCAGGCCATGAGGGTGCTCATACAAATTTCTATACTCTAGCTAGCGCTGGAATGGTCCTACTTCTTTCATTTACAACATATCAGCTTGGTTTCCCATTTGGACTTAAAACTGTAAATATGGCAAGCATGTAGATAAAGTTGATCCTACATGCATGCCACAACTTATCAGACATACCGTCTGCATACTCTGATTGTACATTCATGTCCATACAGGGGAGTAAGTTCGGTAAATTCATCTTAGTGAACAGAACATTTGTGCATTTCATTCAATTTTTTGTTTTGTGGTGATGAGAAGACTATGTCATTTGTTATTCTTCTATAAGAAAATAATTTGTT] consensusID : consensus_186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [ACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTTAGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTGCATATNTGAGTGGAATTGAGATCAGAGGTTGGAGTTCCTAACACACCGCCAATGTTCGGCCCTGCGACATGAAAGGTAGGTTTCCTCCAAGACCAGCAGCAACGGTGTATAGGCTACACAGGTGATGTCACAACCATGCCACTTGCCTGCTGCTGGTGCCTCCACCTCCCTAACTCACGGAGCATTTCTTCAGATCTACAGCCATGCCATGCTGAGTCAGGTCCGATCTACAGCCATGCCATGCGGAATCAGGGTGCCGTTGCTCTCCTGGTTTGGAGGTTGGACCATTTTCTAAGTCATCTTTAGATTTCATAAAAATAATATTAAAGTGATTAGAAGAAATTAAGTTATCCTAATTCGTGTCTCAAAGTTGGTAATCGACAACACACTTCGTTAGAAGATAATATGTTTTTTTTCATCAAAATCAACAGCTCTCGAGTCCAAACATCATTGGAAGCTTTTTGGCTCCATGGCAGATTATTTTTTCTTTTATCCCATAGTTATTTTTCTGTGTCGCACTGCTCTACCTCTGGAATTTTCATAATTCCATAATTCAAGCAAAAGTGTTTCAATAAAAAAAAAAA] [-] EMBL CA760847 [ACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTTAGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTGCATATNTGAGTGGAATTGAGATCAGAGGTTGGAGTTCCTAACACACCGCCAATGTTCGGCCCTGCGACATGAAAGGTAGGTTTCCTCCAAGACCAGCAGCAACGGTGTATAGGCTACACAGGTGATGTCACAACCATGCCACTTGCCTGCTGCTGGTGCCTCCACCTCCCTAACTCACGGAGCATTTCTTCAGATCTACAGCCATGCCATGCTGAGTCAGGTCCGATCTACAGCCATGCCATGCGGAATCAGGGTGCCGTTGCTCTCCTGGTTTGGAGGTTGGACCATTTTCTAAGTCATCTTTAGATTTCATAAAAATAATATTAAAGTGATTAGAAGAAATTAAGTTATCCTAATTCGTGTCTCAAAGTTGGTAATCGACAACACACTTCGTTAGAAGATAATATGTTTTTTTTCATCAAAATCAACAGCTCTCGAGTCCAAACATCATTGGAAGCTTTTTGGCTCCATGGCAGATTATTTTTTCTTTTATCCCATAGTTATTTTTCTGTGTCGCACTGCTCTACCTCTGGAATTTTCATAATTCCATAATTCAAGCAAAAGTGTTTCAATAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_186#0 TCAATTGGCGAACGGCGACGGCGGCGGCGACCTGGTGGCCAGTTGGCACCTTGTCGATTT 60 consensus_186#1 ------------------------------------------------------------ consensus_186#0 CCTTCCAACCTACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTT 120 consensus_186#1 -----------ACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTT 49 ************************************************* consensus_186#0 AGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTG 180 consensus_186#1 AGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTG 109 ************************************************************ consensus_186#0 CATATTTGAGTGGAATTGAGATCAGAGGTGGCCTGGCCAGCCGAGGTCGCGACCGATGTG 240 consensus_186#1 CATATNTGAGTGGAATTGAGATCAGAGGT----TGGAGTTCCTAACACACCGCCAATGTT 165 ***** *********************** *** ** * * * ** **** consensus_186#0 CTTGCAATCAGCGGCAAAGTGGAAGCTAGAGCAGC-CGGATGTCAGCGAGAGCA-TGCAC 298 consensus_186#1 CGGCC------CTGCGACATGAAAGGTAGGTTTCCTCCAAGACCAGCAGCAACGGTGTAT 219 * * * ** * ** *** *** * * * **** * * ** * consensus_186#0 TGCCTCAATCATGAGCTTGCATCGCCGAGCTTAATTCGGAGTCTGCCATCAACATAGGTC 358 consensus_186#1 AGGCT-ACACAGGTGATGTCACAACCATGCC--ACTTG---CCTGCTGCTGG--TGCCTC 271 * ** * ** * * * ** ** ** * * * **** * ** consensus_186#0 ATCTTTCCTAACCAACCTCA-ATTTGTTTACTTGGTCCACATCTTTGGCTTCGTACCTCA 417 consensus_186#1 CACCTCCCTAACTCACGGAGCATTTCTTCA---GATCTACAGCCATGCCATGCTGAGTCA 328 * * ****** ** **** ** * * ** *** * ** * * * *** consensus_186#0 AGTTTGATGTAATTCCTTCATTTATGCGCCGGTTAAGTTATTGCTTGGTTTGCTCTTGTT 477 consensus_186#1 GGTCCGATCTACAGCCATG--CCATGCGG-AATCAGGGTGCCG------TTGCTCTCCTG 379 ** *** ** ** * ***** * * * * * ******* * consensus_186#0 ATTAATGAATTCTTACTATTTATATGAGCATCTT-ACATGACAAATGCAGATTGCTACTT 536 consensus_186#1 GTTTG-GAGGTTGGACCATTTTCTAAGTCATCTTTAGATTTCATA---AAAATAATATTA 435 ** ** * ** **** ****** * ** ** * * * * ** * consensus_186#0 ACTTTGTCTAGGTATATTCACAAGGTCATTTTTCTTAAAAGTTGAATTGTTCCCTCTAAA 596 consensus_186#1 AAGTGATTAGAAGAAATT----AAGTTATCCT------------AATTCGTGTCTCAAAG 479 * * * * *** * ** ** * **** * *** ** consensus_186#0 TGAAGGCTTATTCAACCTATAGGAATAAGTTTTTAAAAGTTGAATTGTTCCCTAGCCT-G 655 consensus_186#1 TTGG----TAATCGAC-----AACACACTTCGTTAGAAGATAATATGTTTTTTTTCATCA 530 * ** ** ** * * * *** *** * * **** * * * consensus_186#0 AAGCAAATCTCTTTCCTGTTTGAACTCTACAGGAATGAGCAGTAATGAGGCTTGAAGGTG 715 consensus_186#1 AAATCAACAGCTCTCGAGTCCAAACATCATTGGAA------GCTTTTTGGCTCCATGGC- 583 ** ** ** ** ** *** * **** * * **** * ** consensus_186#0 ATACAGTTATCGACTTGAAATTGTAGTCGGATAAAGTATTTGATTATTTGCCTCCACATT 775 consensus_186#1 AGATTATTTTTTCTTTTATCCCATAGT---------TATTT--TTCTGTGTCGCA----C 628 * * ** * ** * **** ***** ** * ** * * consensus_186#0 TGATTCGTATATATTAGTTTAACAAATACATAATTGAAAGTGAAGGATCTGACCTATAAC 835 consensus_186#1 TGCTCTACCTCTGGAATTTTCATAATTCCATAATTCAAGCAAAAGTGTTTCAATAAAAAA 688 ** * * * * *** * ** * ******* ** *** * * * * ** consensus_186#0 TGACGCCTAATGGTAGGCATTTAAAGGAATCTGAAATTGTAACTAACTTTCTTTTGTACG 895 consensus_186#1 AAAAA------------------------------------------------------- 693 * consensus_186#0 AAAGAATTCAAATACATAAATGTGCAGATGCAGCGAGGCTTTTTCAGAAACAAATATGAT 955 consensus_186#1 ------------------------------------------------------------ consensus_186#0 TCTTACTGTTAAAATATCCTCTACCTGGCAGACATCTAAGGAAGTGTACTCATTTGAATT 1015 consensus_186#1 ------------------------------------------------------------ consensus_186#0 CTGATTTTGCTTTTTCTCAGGGTTGTTTCATGTTCTAAAGAGTGTCATCTGCAATGCGAT 1075 consensus_186#1 ------------------------------------------------------------ consensus_186#0 AGCTTTAGAGAGATGAAAGTCCAATTATGCTAGATTATCAGTTTTTTTGCAAGGATGCTA 1135 consensus_186#1 ------------------------------------------------------------ consensus_186#0 GAATATCACTTTGACTTGTTTGGTACTGTCCAATGCCAATAGTGGCAATGAAGACAACTC 1195 consensus_186#1 ------------------------------------------------------------ consensus_186#0 TTTATACATCATCAGAGGAAATGCTGACTCCATTATTTGTGATAGAAAATGTTAAACATG 1255 consensus_186#1 ------------------------------------------------------------ consensus_186#0 GTGGAAGCAGGGGAGTAGAATGTGGAGCAAATATAAATATATTTTGAAGCTAGGCAGGCC 1315 consensus_186#1 ------------------------------------------------------------ consensus_186#0 ATGAGGGTGCTCATACAAATTTCTATACTCTAGCTAGCGCTGGAATGGTCCTACTTCTTT 1375 consensus_186#1 ------------------------------------------------------------ consensus_186#0 CATTTACAACATATCAGCTTGGTTTCCCATTTGGACTTAAAACTGTAAATATGGCAAGCA 1435 consensus_186#1 ------------------------------------------------------------ consensus_186#0 TGTAGATAAAGTTGATCCTACATGCATGCCACAACTTATCAGACATACCGTCTGCATACT 1495 consensus_186#1 ------------------------------------------------------------ consensus_186#0 CTGATTGTACATTCATGTCCATACAGGGGAGTAAGTTCGGTAAATTCATCTTAGTGAACA 1555 consensus_186#1 ------------------------------------------------------------ consensus_186#0 GAACATTTGTGCATTTCATTCAATTTTTTGTTTTGTGGTGATGAGAAGACTATGTCATTT 1615 consensus_186#1 ------------------------------------------------------------ consensus_186#0 GTTATTCTTCTATAAGAAAATAATTTGTT 1644 consensus_186#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||