cluster # 1861

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Oryza sativa
cluster # 1861 cluster # 1861 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1861#0 length = 430 sequences # 1

consensus_1861#1 length = 398 sequences # 1

consensusID : consensus_1861#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [GCCGCTCTCCTCCTTACATCGCTAGTGTACGCTGGCTCGTTCGTCGCGAGGCTCTGGCTGCTGGCGAATTCGTGCGGCGGAGGCTATGAAGAGCCGGAGATAGGCTGGGCACAGAGGCTTGCTCACCGGATCCGTGCCTCCGTAGGAGATGTGATGGTTTGGCGCAACTGCGTAGTGGCACCAATTACAGAGGAATTGGTTTTCCGGGCGTGCATGGTACCTCTTCTTCTATGTGGAGGATTCAAAATATATAACATTATATTTCTGAGTCCAGTCTTCTTCAGCCTAGCACACTTGAACCATTTATTCGAACTACATCAACAGGGACGCAATTTTACGAGATCACTCCTGATCGTTGGTGTCCAGTTAGGCTACACTGTAATTTTTGGGTGGTATGCAGTATTTTTGTTCACCCGAACAGGGAATATCG]

[+] EMBL AU225190             [GCCGCTCTCCTCCTTACATCGCTAGTGTACGCTGGCTCGTTCGTCGCGAGGCTCTGGCTGCTGGCGAATTCGTGCGGCGGAGGCTATGAAGAGCCGGAGATAGGCTGGGCACAGAGGCTTGCTCACCGGATCCGTGCCTCCGTAGGAGATGTGATGGTTTGGCGCAACTGCGTAGTGGCACCAATTACAGAGGAATTGGTTTTCCGGGCGTGCATGGTACCTCTTCTTCTATGTGGAGGATTCAAAATATATAACATTATATTTCTGAGTCCAGTCTTCTTCAGCCTAGCACACTTGAACCATTTATTCGAACTACATCAACAGGGACGCAATTTTACGAGATCACTCCTGATCGTTGGTGTCCAGTTAGGCTACACTGTAATTTTTGGGTGGTATGCAGTATTTTTGTTCACCCGAACAGGGAATATCG]




>consensus_1861#0
GCCGCTCTCCTCCTTACATCGCTAGTGTACGCTGGCTCGTTCGTCGCGAGGCTCTGGCTG
CTGGCGAATTCGTGCGGCGGAGGCTATGAAGAGCCGGAGATAGGCTGGGCACAGAGGCTT
GCTCACCGGATCCGTGCCTCCGTAGGAGATGTGATGGTTTGGCGCAACTGCGTAGTGGCA
CCAATTACAGAGGAATTGGTTTTCCGGGCGTGCATGGTACCTCTTCTTCTATGTGGAGGA
TTCAAAATATATAACATTATATTTCTGAGTCCAGTCTTCTTCAGCCTAGCACACTTGAAC
CATTTATTCGAACTACATCAACAGGGACGCAATTTTACGAGATCACTCCTGATCGTTGGT
GTCCAGTTAGGCTACACTGTAATTTTTGGGTGGTATGCAGTATTTTTGTTCACCCGAACA
GGGAATATCG

consensusID : consensus_1861#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [CGGATCCGTGCCTCCGTAGGAGATGTGATGGTTTGGCGCAACTGCGTAGTGGCACCAATTACAGAGGAATTGGTTTTCCGGGCGTGCATGGTACCTCTTCTTCTATGTGGAGGATTCAAAATATATAACATTATATTTCTGAGTCCAGTCTTCTTCAGCCTAGGTAAATAGCTTTTATATTGTACCAAAATTTCATTTCTAAGGGTCTGATCTGGTACTATTAACTTGTTTATACCCATGTTGTCTGTCCTTATCTAGTTGTTTCTATAGGAATTAAGAACTGCTGCGTAATACAACCCTTAAGATTTACCTATGTGTTGATGTTTTCTTCTGTTAATTTGTAACTGAGCCTTTCTATCAACAGCACACTTGAACCATTTATTCGAACTACATCAACA]

[+] EMBL CF324901             [CGGATCCGTGCCTCCGTAGGAGATGTGATGGTTTGGCGCAACTGCGTAGTGGCACCAATTACAGAGGAATTGGTTTTCCGGGCGTGCATGGTACCTCTTCTTCTATGTGGAGGATTCAAAATATATAACATTATATTTCTGAGTCCAGTCTTCTTCAGCCTAGGTAAATAGCTTTTATATTGTACCAAAATTTCATTTCTAAGGGTCTGATCTGGTACTATTAACTTGTTTATACCCATGTTGTCTGTCCTTATCTAGTTGTTTCTATAGGAATTAAGAACTGCTGCGTAATACAACCCTTAAGATTTACCTATGTGTTGATGTTTTCTTCTGTTAATTTGTAACTGAGCCTTTCTATCAACAGCACACTTGAACCATTTATTCGAACTACATCAACA]




>consensus_1861#1
CGGATCCGTGCCTCCGTAGGAGATGTGATGGTTTGGCGCAACTGCGTAGTGGCACCAATT
ACAGAGGAATTGGTTTTCCGGGCGTGCATGGTACCTCTTCTTCTATGTGGAGGATTCAAA
ATATATAACATTATATTTCTGAGTCCAGTCTTCTTCAGCCTAGGTAAATAGCTTTTATAT
TGTACCAAAATTTCATTTCTAAGGGTCTGATCTGGTACTATTAACTTGTTTATACCCATG
TTGTCTGTCCTTATCTAGTTGTTTCTATAGGAATTAAGAACTGCTGCGTAATACAACCCT
TAAGATTTACCTATGTGTTGATGTTTTCTTCTGTTAATTTGTAACTGAGCCTTTCTATCA
ACAGCACACTTGAACCATTTATTCGAACTACATCAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1861#0      GCCGCTCTCCTCCTTACATCGCTAGTGTACGCTGGCTCGTTCGTCGCGAGGCTCTGGCTG 60
consensus_1861#1      ------------------------------------------------------------
                                                                                  

consensus_1861#0      CTGGCGAATTCGTGCGGCGGAGGCTATGAAGAGCCGGAGATAGGCTGGGCACAGAGGCTT 120
consensus_1861#1      ------------------------------------------------------------
                                                                                  

consensus_1861#0      GCTCACCGGATCCGTGCCTCCGTAGGAGATGTGATGGTTTGGCGCAACTGCGTAGTGGCA 180
consensus_1861#1      ------CGGATCCGTGCCTCCGTAGGAGATGTGATGGTTTGGCGCAACTGCGTAGTGGCA 54
                            ******************************************************

consensus_1861#0      CCAATTACAGAGGAATTGGTTTTCCGGGCGTGCATGGTACCTCTTCTTCTATGTGGAGGA 240
consensus_1861#1      CCAATTACAGAGGAATTGGTTTTCCGGGCGTGCATGGTACCTCTTCTTCTATGTGGAGGA 114
                      ************************************************************

consensus_1861#0      TTCAAAATATATAACATTATATTTCTGAGTCCAGTCTTCTTCAGCCTAGCACA----CTT 296
consensus_1861#1      TTCAAAATATATAACATTATATTTCTGAGTCCAGTCTTCTTCAGCCTAGGTAAATAGCTT 174
                      *************************************************   *    ***

consensus_1861#0      GAACCATTTATTCGAACTACATCAACAGGGACGCAATTTTACGAGATCACTCCTGATCGT 356
consensus_1861#1      TTATATTGTACCAAAATTTCATTTCTAAGGGTCTGATCTGGTACTATTAA-CTTGTTTAT 233
                        *   * **    ** * ***    * **     ** *      ** *  * ** *  *

consensus_1861#0      TGGTGTCCAGTTAGGCTACACTGTAATTTTTGGGT-GGTATGCAGTATTTTTGTTCACCC 415
consensus_1861#1      ACCCATGTTGTCTGTCCTTATCTAGTTGTTTCTATAGGAATTAAGAACTGCTGCGTAATA 293
                           *   **  * *   *      * ***   * ** **  ** * *  **   *   

consensus_1861#0      GAACAGGGAATATCG--------------------------------------------- 430
consensus_1861#1      CAACCCTTAAGATTTACCTATGTGTTGATGTTTTCTTCTGTTAATTTGTAACTGAGCCTT 353
                       ***    ** **                                               

consensus_1861#0      ---------------------------------------------
consensus_1861#1      TCTATCAACAGCACACTTGAACCATTTATTCGAACTACATCAACA 398