These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2126 fasta sequence [TCAAGGTCAGGGAGAGCTGCTCCCTTGCTGGCCTTGAGATGTTTGCATTGGTTTTTTCCCTTTCCCTTTCTCTTTGGTGGTCATTAGGCCTACCTGATACTACTTGTAGTGAGTGAGTGATAAGTTGATAACACTTCTCCCTGCCCCAATTGTTTCCTTGTTCCTAGTAGAAGTAGAAGCTGGAAGCTGGTCTCTTTGGGTTTTGGAAGGCTTCATCTTTCCATTTTAGGTCCTGCAAGTGTGCTCAACAACTCAAGCTTCACTGTCTTCTTGGTTTCTACCTCTGGTTTTGATTATTATCACTAGTTTCTGCAATTCTTGGAGATTTCCGAGGCGGCCATGAGCGGCAATCCATCGTTCTCGCAGCTCGGTGCGGTGGACGCCGCCATGAACGGCGGCTACTTCATGGCGGCGAGCGGCAATGGCGCCGACGTGCCGCTGTTCCATCCGGCCATGGCGCCGCCGCATGATCACGGCGGGAGCTTCGGCTACGGCGACGCGGCGGCGGCGGCGATGGACGTCGGCGCGCACTTCGCGGCGGCGAACAACCTCGTGCTCGCGTCCCTGGCGACCCAGCTGTTCGGCGCCGCGCCGGCGGCGGCGGCGCACGGGCATGGCGACTACCTCGGCGCGACGACGCCGCCGGAGGAGGAGATGGGGGGCGGGTACGACGTCGCCGTCGGCGACAGCTCCGGCGGCGCGGTGAGCCTCGCGTGCCTCGGCCACGGCCAGCCGGGCGACATGGCGGCGGGGTGGTGCTCGACGTCGGCGAGGAAGCCGAGCTGCAACTGGAGCAGCAGCAACGCCGGTGTGCACGGTGGTTCGTATTACCTCGCCGGGGTGCCGGAGGCTGCCGGCTTCGTGTCCGCGGCGGCGGCGAGCGAGCTGTCGCTGAGCCTGTGCTCCAAGTCGTCCTCGGACAGCATGCTCAACGCCGGCGGCGACCAGTGCTCGTCGGCGGCGAGCCGTTCCGGGCTGACGCAGATGAGCAGGGTGGTGGTGGTGGAGCCCGAGCCGCCGCTCGTACCGTACTACCCGGCGGCGAACTTCGCCGTGGTGGTGGCGCGGTCCCGATACGCCGCGGTGGCGCAGCAGGTGCTCAACGACGCCGTCGGCTGCGTGCTGGGCGGCGTCGCGGACGCCGCCGCCGACTCGGCCAGCGGCGTCGACAGCGGCAGCTCGAGGCCGTCGAGCTGCTCGGTGGCCGGCGGCGCGCCGTCGTCCGCCGTGAGCTCCAACAACCAGCTCATCGCCTCCTCCGGCGAGCACACGCACGGCGGCGGCGACGCTTCGGCTCAGCGGCTCAGGAGCGAGCTCCTCACCATGCTCCAGCTGATGGATCAGAAGTACAACCAATGCCTCGACGAGATCCAGAGCACGACGGCGAGGTTCAACACCCTGACGCACGCCACGGCGCGCGCCGCCGGGATGAGCAGCAGCAGCATCTGCGCGCCGTTCGCGCACCGCGCCGTGTCGGCAATGTACCACGGCCTGAGGCGCCGCATTGCCGGCGAGATCATGTCCGCCGCCGCCGCGGCCGGCAGGCCTTGCCGCGGCGGCGAGTCGTCGTCGGCGGTGACCGGCGGCGAGAGGGAGCGGAGCTGGGAGTCGGCGTTCATCCAGAAGCACTGGGCGGTGCAGCAGCTGCGGCGCGGCGAGCAGCAGTGCTGGCGGCCGCAGCGCGGCCTCCCGGAGAAGTCCGTCGCCGTCCTCAAGGCCTGGATGTTCGAGAACTTCCTCCGCCCGTATCCGAAAGACAGCGAGAAGGAGATGCTCGCAGCAAGGAGCGGCCTCAGCAGGAACCAGGTGTCGAATTGGTTCATAAACGCTCGAGTTCGGCTATGGAAGCCAATGATCGAGGAGATGTGCGAGGAGCTGAAGAGGAGCTCGGGTGGTGGTGCTGGAAATCAAGCTCTAGCAATGGAGCATATGAACAGCCAAGATGTGGTCAGTTAACCAGTTAGAGCTTTGGCTTGGTTTGATGGCGATGTTAGCTGCGGATTAAGATCAATCAATGCCATTGATCTATTTATCGATCACCAATTGTAACTCAGTTTAATTCGATGGTTTCAGTATATATAAAAGCTGCCGGTGCAGTGATCGCATTTCGCGGTAGATCATGAGCA] [+] EMBL AK109849 [TCAAGGTCAGGGAGAGCTGCTCCCTTGCTGGCCTTGAGATGTTTGCATTGGTTTTTTCCCTTTCCCTTTCTCTTTGGTGGTCATTAGGCCTACCTGATACTACTTGTAGTGAGTGAGTGATAAGTTGATAACACTTCTCCCTGCCCCAATTGTTTCCTTGTTCCTAGTAGAAGTAGAAGCTGGAAGCTGGTCTCTTTGGGTTTTGGAAGGCTTCATCTTTCCATTTTAGGTCCTGCAAGTGTGCTCAACAACTCAAGCTTCACTGTCTTCTTGGTTTCTACCTCTGGTTTTGATTATTATCACTAGTTTCTGCAATTCTTGGAGATTTCCGAGGCGGCCATGAGCGGCAATCCATCGTTCTCGCAGCTCGGTGCGGTGGACGCCGCCATGAACGGCGGCTACTTCATGGCGGCGAGCGGCAATGGCGCCGACGTGCCGCTGTTCCATCCGGCCATGGCGCCGCCGCATGATCACGGCGGGAGCTTCGGCTACGGCGACGCGGCGGCGGCGGCGATGGACGTCGGCGCGCACTTCGCGGCGGCGAACAACCTCGTGCTCGCGTCCCTGGCGACCCAGCTGTTCGGCGCCGCGCCGGCGGCGGCGGCGCACGGGCATGGCGACTACCTCGGCGCGACGACGCCGCCGGAGGAGGAGATGGGGGGCGGGTACGACGTCGCCGTCGGCGACAGCTCCGGCGGCGCGGTGAGCCTCGCGTGCCTCGGCCACGGCCAGCCGGGCGACATGGCGGCGGGGTGGTGCTCGACGTCGGCGAGGAAGCCGAGCTGCAACTGGAGCAGCAGCAACGCCGGTGTGCACGGTGGTTCGTATTACCTCGCCGGGGTGCCGGAGGCTGCCGGCTTCGTGTCCGCGGCGGCGGCGAGCGAGCTGTCGCTGAGCCTGTGCTCCAAGTCGTCCTCGGACAGCATGCTCAACGCCGGCGGCGACCAGTGCTCGTCGGCGGCGAGCCGTTCCGGGCTGACGCAGATGAGCAGGGTGGTGGTGGTGGAGCCCGAGCCGCCGCTCGTACCGTACTACCCGGCGGCGAACTTCGCCGTGGTGGTGGCGCGGTCCCGATACGCCGCGGTGGCGCAGCAGGTGCTCAACGACGCCGTCGGCTGCGTGCTGGGCGGCGTCGCGGACGCCGCCGCCGACTCGGCCAGCGGCGTCGACAGCGGCAGCTCGAGGCCGTCGAGCTGCTCGGTGGCCGGCGGCGCGCCGTCGTCCGCCGTGAGCTCCAACAACCAGCTCATCGCCTCCTCCGGCGAGCACACGCACGGCGGCGGCGACGCTTCGGCTCAGCGGCTCAGGAGCGAGCTCCTCACCATGCTCCAGCTGATGGATCAGAAGTACAACCAATGCCTCGACGAGATCCAGAGCACGACGGCGAGGTTCAACACCCTGACGCACGCCACGGCGCGCGCCGCCGGGATGAGCAGCAGCAGCATCTGCGCGCCGTTCGCGCACCGCGCCGTGTCGGCAATGTACCACGGCCTGAGGCGCCGCATTGCCGGCGAGATCATGTCCGCCGCCGCCGCGGCCGGCAGGCCTTGCCGCGGCGGCGAGTCGTCGTCGGCGGTGACCGGCGGCGAGAGGGAGCGGAGCTGGGAGTCGGCGTTCATCCAGAAGCACTGGGCGGTGCAGCAGCTGCGGCGCGGCGAGCAGCAGTGCTGGCGGCCGCAGCGCGGCCTCCCGGAGAAGTCCGTCGCCGTCCTCAAGGCCTGGATGTTCGAGAACTTCCTCCGCCCGTATCCGAAAGACAGCGAGAAGGAGATGCTCGCAGCAAGGAGCGGCCTCAGCAGGAACCAGGTGTCGAATTGGTTCATAAACGCTCGAGTTCGGCTATGGAAGCCAATGATCGAGGAGATGTGCGAGGAGCTGAAGAGGAGCTCGGGTGGTGGTGCTGGAAATCAAGCTCTAGCAATGGAGCATATGAACAGCCAAGATGTGGTCAGTTAACCAGTTAGAGCTTTGGCTTGGTTTGATGGCGATGTTAGCTGCGGATTAAGATCAATCAATGCCATTGATCTATTTATCGATCACCAATTGTAACTCAGTTTAATTCGATGGTTTCAGTATATATAAAAGCTGCCGGTGCAGTGATCGCATTTCGCGGTAGATCATGAGCA] consensusID : consensus_1862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [CTGCGGATTAAAGNTCAATCCAATGCCATTGATCTATTTAATCGATCACCAATTGTAACTCAGTTTAAATNCGATGGTTACAGTATATATAAAAAGCTGCCGGTGCNGTGATCGCATTTCGCGGTNGATCATGAGCACCTCATTGGGAGATCGATGCGAATTGCTGAGTTTTCAGTTGAGTAGGCTGCNGTAAAAAAATCAGTTAAAAAATTTGGGATTGATTGTTGTTAGTACTACCTCAGTTCCAAATTATAAGGATATTTAGGCTATTTAGTAAATAGTTCTGAGGTTGGCAATTTTTTTTTTTGAATTGCGTACGTCTTAGGGGCTCAAGATCCGCTCATATTTTCACATTGTTGATGTCCTAAGATCCGCTCATATTTTCACATTGTGCATTTGATTGGCTATGGAATCATTGAAATGATGGGATTCATTGGAAAAAAAAAA] [+] EMBL C99429 [CTGCGGATTAAAGNTCAATCCAATGCCATTGATCTATTTAATCGATCACCAATTGTAACTCAGTTTAAATNCGATGGTTACAGTATATATAAAAAGCTGCCGGTGCNGTGATCGCATTTCGCGGTNGATCATGAGCACCTCATTGGGAGATCGATGCGAATTGCTGAGTTTTCAGTTGAGTAGGCTGCNGTAAAAAAATCAGTTAAAAAATTTGGGATTGATTGTTGTTAGTACTACCTCAGTTCCAAATTATAAGGATATTTAGGCTATTTAGTAAATAGTTCTGAGGTTGGCAATTTTTTTTTTTGAATTGCGTACGTCTTAGGGGCTCAAGATCCGCTCATATTTTCACATTGTTGATGTCCTAAGATCCGCTCATATTTTCACATTGTGCATTTGATTGGCTATGGAATCATTGAAATGATGGGATTCATTGGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1862#0 TCAAGGTCAGGGAGAGCTGCTCCCTTGCTGGCCTTGAGATGTTTGCATTGGTTTTTTCCC 60 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 TTTCCCTTTCTCTTTGGTGGTCATTAGGCCTACCTGATACTACTTGTAGTGAGTGAGTGA 120 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 TAAGTTGATAACACTTCTCCCTGCCCCAATTGTTTCCTTGTTCCTAGTAGAAGTAGAAGC 180 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 TGGAAGCTGGTCTCTTTGGGTTTTGGAAGGCTTCATCTTTCCATTTTAGGTCCTGCAAGT 240 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GTGCTCAACAACTCAAGCTTCACTGTCTTCTTGGTTTCTACCTCTGGTTTTGATTATTAT 300 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 CACTAGTTTCTGCAATTCTTGGAGATTTCCGAGGCGGCCATGAGCGGCAATCCATCGTTC 360 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 TCGCAGCTCGGTGCGGTGGACGCCGCCATGAACGGCGGCTACTTCATGGCGGCGAGCGGC 420 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 AATGGCGCCGACGTGCCGCTGTTCCATCCGGCCATGGCGCCGCCGCATGATCACGGCGGG 480 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 AGCTTCGGCTACGGCGACGCGGCGGCGGCGGCGATGGACGTCGGCGCGCACTTCGCGGCG 540 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GCGAACAACCTCGTGCTCGCGTCCCTGGCGACCCAGCTGTTCGGCGCCGCGCCGGCGGCG 600 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GCGGCGCACGGGCATGGCGACTACCTCGGCGCGACGACGCCGCCGGAGGAGGAGATGGGG 660 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GGCGGGTACGACGTCGCCGTCGGCGACAGCTCCGGCGGCGCGGTGAGCCTCGCGTGCCTC 720 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GGCCACGGCCAGCCGGGCGACATGGCGGCGGGGTGGTGCTCGACGTCGGCGAGGAAGCCG 780 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 AGCTGCAACTGGAGCAGCAGCAACGCCGGTGTGCACGGTGGTTCGTATTACCTCGCCGGG 840 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GTGCCGGAGGCTGCCGGCTTCGTGTCCGCGGCGGCGGCGAGCGAGCTGTCGCTGAGCCTG 900 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 TGCTCCAAGTCGTCCTCGGACAGCATGCTCAACGCCGGCGGCGACCAGTGCTCGTCGGCG 960 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GCGAGCCGTTCCGGGCTGACGCAGATGAGCAGGGTGGTGGTGGTGGAGCCCGAGCCGCCG 1020 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 CTCGTACCGTACTACCCGGCGGCGAACTTCGCCGTGGTGGTGGCGCGGTCCCGATACGCC 1080 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GCGGTGGCGCAGCAGGTGCTCAACGACGCCGTCGGCTGCGTGCTGGGCGGCGTCGCGGAC 1140 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GCCGCCGCCGACTCGGCCAGCGGCGTCGACAGCGGCAGCTCGAGGCCGTCGAGCTGCTCG 1200 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GTGGCCGGCGGCGCGCCGTCGTCCGCCGTGAGCTCCAACAACCAGCTCATCGCCTCCTCC 1260 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GGCGAGCACACGCACGGCGGCGGCGACGCTTCGGCTCAGCGGCTCAGGAGCGAGCTCCTC 1320 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 ACCATGCTCCAGCTGATGGATCAGAAGTACAACCAATGCCTCGACGAGATCCAGAGCACG 1380 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 ACGGCGAGGTTCAACACCCTGACGCACGCCACGGCGCGCGCCGCCGGGATGAGCAGCAGC 1440 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 AGCATCTGCGCGCCGTTCGCGCACCGCGCCGTGTCGGCAATGTACCACGGCCTGAGGCGC 1500 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 CGCATTGCCGGCGAGATCATGTCCGCCGCCGCCGCGGCCGGCAGGCCTTGCCGCGGCGGC 1560 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 GAGTCGTCGTCGGCGGTGACCGGCGGCGAGAGGGAGCGGAGCTGGGAGTCGGCGTTCATC 1620 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 CAGAAGCACTGGGCGGTGCAGCAGCTGCGGCGCGGCGAGCAGCAGTGCTGGCGGCCGCAG 1680 consensus_1862#1 --------------------------------CTGCGGATTAAAGNTCAATC-----CAA 23 * *** ** * * ** consensus_1862#0 CGCGGCCTCCCGGAGAAGTCCGTCGCCGTCCTCAAGGCC-TGGATGTTCGAGAACTTCCT 1739 consensus_1862#1 TGCCATTGATCTATTTAATCGATCACCAATTGTAACTCAGTTTAAATNCGATGGTTACA- 82 ** * * ** ** ** ** * * * * *** * * consensus_1862#0 CCGCCCGTATCCGAAAGACAGCGAGAAGGAGATGCTCGCAGCAAGGAGCGGCCTCAGCAG 1799 consensus_1862#1 ----GTATATATAAAAAGCTGCCGG--TGCNGTGATCGCATTTCGCGGTNGA-TCATGAG 135 *** *** * ** * * ** ***** * * * *** ** consensus_1862#0 GAACCAGGTGTCGAATTGGTTCATAAACGCTCGAGTTCGGCTATGGAAGCCAATGATCGA 1859 consensus_1862#1 CACCTCATTGGGAGATCGATGCG-AATTGCTGAGTTTTCAGTTGAGTAGGCTGCNGTAAA 194 * * ** ** * * * ** *** ** * * ** * * * consensus_1862#0 GGAGATGTGCGAGGAGCTGAAGAGGAGCTCGGGTGGTGGTGCTGGAAATCAAGCTCTAGC 1919 consensus_1862#1 AAAATCAGTTAAAAAATTTGGGATTGATT--GTTGTTAGTACT--ACCTCAGTTCCAAAT 250 * * * * ** * * ** * ** ** * *** * * consensus_1862#0 AATGGAGCATATGAACAGCCAAGATGTGGTCAGTTAACCAGTTAGAGCTTTGGCTTGGTT 1979 consensus_1862#1 TATAAGG-ATATTTA-GGCTATTTAGTAAATAGTTCTGAGGTTGGCAATTTTTTTTT-TT 307 ** * **** * ** * ** **** *** * *** ** ** consensus_1862#0 TGATGGCGATGTTAGCTGCGGATTAAGATCAATCAATGCCATTGATCTATTTATCGATCA 2039 consensus_1862#1 GAATTGCGTACGTCTTAGGGGCTCAAGATCCGCTCATATTTTCACATTGTTGATGTCCTA 367 ** *** * * ** * ****** ** * * ** ** * consensus_1862#0 CCAATTGTAACTCAGTTTAATTCGATGGTTTCAGTATATATAAAAGCTGCCGGTGCAGTG 2099 consensus_1862#1 AGATCCGCTCATATTTTCACATTGTGCATTTGATTGGCTATGGAA----TCATTGAAATG 423 * * * ** * * * *** * * *** ** * ** * ** consensus_1862#0 ATCGCATTTCGCGGTAGATCATGAGCA 2126 consensus_1862#1 ATGGGATTCATTGGAAAAAAAAAA--- 447 ** * *** ** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||