cluster # 1868

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1868 cluster # 1868 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1868#0 length = 576 sequences # 1

consensus_1868#1 length = 463 sequences # 1

consensusID : consensus_1868#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [CCCNCAAGGANACTTTNCTNTTCATACATTTACAAGGTCCTCAAGCAGGCCCCCCCGACACTGGTTTCTCCAACCGGCCATGTCCATCCTGAACTCTTTCGTCAACGACATNTTNGAGCGTGTTGCTACCNAAGCTTCCAAGCTTGCCGCCTACAACAANAAGTCAACCATCTCATCTNGTGAGATCCANACCTCGGTCAGGCTTATTTTGCCCGGTGAGCTTGCCAANCACCCCGTGTTTNAGGGTACCAAGGCTGTTACCAAGTACTCTTCAAGCCCCAAATAAATCAAGCGCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTTTTCTTTTTACATGGGAGTCATAATGGGTTGGTAAACGGGTTGGCCCCCCTCGTTTGCCTCCTAATGCTTTTACGGTACTGGTTGCGTCTGTTTTTATTGGGGATCACTTTTTCAGGTCACGGGGTTTCGCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAACACATGGCGTCTATTCCTAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003344             [CCCNCAAGGANACTTTNCTNTTCATACATTTACAAGGTCCTCAAGCAGGCCCCCCCGACACTGGTTTCTCCAACCGGCCATGTCCATCCTGAACTCTTTCGTCAACGACATNTTNGAGCGTGTTGCTACCNAAGCTTCCAAGCTTGCCGCCTACAACAANAAGTCAACCATCTCATCTNGTGAGATCCANACCTCGGTCAGGCTTATTTTGCCCGGTGAGCTTGCCAANCACCCCGTGTTTNAGGGTACCAAGGCTGTTACCAAGTACTCTTCAAGCCCCAAATAAATCAAGCGCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTTTTCTTTTTACATGGGAGTCATAATGGGTTGGTAAACGGGTTGGCCCCCCTCGTTTGCCTCCTAATGCTTTTACGGTACTGGTTGCGTCTGTTTTTATTGGGGATCACTTTTTCAGGTCACGGGGTTTCGCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAACACATGGCGTCTATTCCTAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_1868#0
CCCNCAAGGANACTTTNCTNTTCATACATTTACAAGGTCCTCAAGCAGGCCCCCCCGACA
CTGGTTTCTCCAACCGGCCATGTCCATCCTGAACTCTTTCGTCAACGACATNTTNGAGCG
TGTTGCTACCNAAGCTTCCAAGCTTGCCGCCTACAACAANAAGTCAACCATCTCATCTNG
TGAGATCCANACCTCGGTCAGGCTTATTTTGCCCGGTGAGCTTGCCAANCACCCCGTGTT
TNAGGGTACCAAGGCTGTTACCAAGTACTCTTCAAGCCCCAAATAAATCAAGCGCTTGTC
TTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTTTTCTTTT
TACATGGGAGTCATAATGGGTTGGTAAACGGGTTGGCCCCCCTCGTTTGCCTCCTAATGC
TTTTACGGTACTGGTTGCGTCTGTTTTTATTGGGGATCACTTTTTCAGGTCACGGGGTTT
CGCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAACACATGGC
GTCTATTCCTAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_1868#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [AAAGCTTTCCCAAAAGCTTNCCCGCCTTACCAACCAAANAAGTCAAACCCNTCCNCATCTCGTGAGATCCCAANACCTCGGGTCAGGCTTATCTTGCCCGGTGAGCTTGCCAAGCACGCCGGTGTNTGAGGGTACCAAGGCTGTTACCAAGTACTNTTCAAGCNCCAAATAAATCAAGCGCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTTTTCTTTTGACATGGGAGTCATGATGGGTTGGTAANCGGGTTGGCCCNCCTCGTTTGCCTCCTAATGCTTTTNCGGTACTGGTTGCGTCTGTTTTTATTGGGGATCNCTTTTTCAGGTCACGGGGTTTNNCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAACACATGGCATCTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003535             [AAAGCTTTCCCAAAAGCTTNCCCGCCTTACCAACCAAANAAGTCAAACCCNTCCNCATCTCGTGAGATCCCAANACCTCGGGTCAGGCTTATCTTGCCCGGTGAGCTTGCCAAGCACGCCGGTGTNTGAGGGTACCAAGGCTGTTACCAAGTACTNTTCAAGCNCCAAATAAATCAAGCGCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTTTTCTTTTGACATGGGAGTCATGATGGGTTGGTAANCGGGTTGGCCCNCCTCGTTTGCCTCCTAATGCTTTTNCGGTACTGGTTGCGTCTGTTTTTATTGGGGATCNCTTTTTCAGGTCACGGGGTTTNNCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAACACATGGCATCTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_1868#1
AAAGCTTTCCCAAAAGCTTNCCCGCCTTACCAACCAAANAAGTCAAACCCNTCCNCATCT
CGTGAGATCCCAANACCTCGGGTCAGGCTTATCTTGCCCGGTGAGCTTGCCAAGCACGCC
GGTGTNTGAGGGTACCAAGGCTGTTACCAAGTACTNTTCAAGCNCCAAATAAATCAAGCG
CTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTTT
TCTTTTGACATGGGAGTCATGATGGGTTGGTAANCGGGTTGGCCCNCCTCGTTTGCCTCC
TAATGCTTTTNCGGTACTGGTTGCGTCTGTTTTTATTGGGGATCNCTTTTTCAGGTCACG
GGGTTTNNCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAACA
CATGGCATCTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1868#0      CCCNCAAGGANACTTTNCTNTTCATACATTTACAAGGTCCTCAAGCAGGCCCCCCCGACA 60
consensus_1868#1      ------------------------------------------------------------
                                                                                  

consensus_1868#0      CTGGTTTCTCCAACCGGCCATGTCCATCCTGAACTCTTTCGTCAACGACATNTTNGAGCG 120
consensus_1868#1      --------------------------------------------------------AAAG 4
                                                                              *  *

consensus_1868#0      TGTTGCTACCNAAGCTTCCAAGCTTGCCGCCTACAACAANAAGTCAA---CCATCTCATC 177
consensus_1868#1      CTTTCCCA--AAAGCTTNCCCGCCT--TACCAACCA-AANAAGTCAAACCCNTCCNCATC 59
                        ** * *   ****** *  ** *    ** ** * **********   *   * ****

consensus_1868#0      TNGTGAGATCC--ANACCTCGG-TCAGGCTTATTTTGCCCGGTGAGCTTGCCAANCACCC 234
consensus_1868#1      TCGTGAGATCCCAANACCTCGGGTCAGGCTTATCTTGCCCGGTGAGCTTGCCAAGCACGC 119
                      * *********  ********* ********** ******************** *** *

consensus_1868#0      CG-TGTTTNAGGGTACCAAGGCTGTTACCAAGTACTCTTCAAGCCCCAAATAAATCAAGC 293
consensus_1868#1      CGGTGTNTGAGGGTACCAAGGCTGTTACCAAGTACTNTTCAAGCNCCAAATAAATCAAGC 179
                      ** *** * *************************** ******* ***************

consensus_1868#0      GCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTT 353
consensus_1868#1      GCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTT 239
                      ************************************************************

consensus_1868#0      TTCTTTTTACATGGGAGTCATAATGGGTTGGTAAACGGGTTGGCCCCCCTCGTTTGCCTC 413
consensus_1868#1      TTCTTTTGACATGGGAGTCATGATGGGTTGGTAANCGGGTTGGCCCNCCTCGTTTGCCTC 299
                      ******* ************* ************ *********** *************

consensus_1868#0      CTAATGCTTTTACGGTACTGGTTGCGTCTGTTTTTATTGGGGATCACTTTTTCAGGTCAC 473
consensus_1868#1      CTAATGCTTTTNCGGTACTGGTTGCGTCTGTTTTTATTGGGGATCNCTTTTTCAGGTCAC 359
                      *********** ********************************* **************

consensus_1868#0      GGGGTTTCGCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAAC 533
consensus_1868#1      GGGGTTTNNCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAAC 419
                      *******  ***************************************************

consensus_1868#0      ACATGGCGTCTATTCCTAAAAAAAAAAAAAAAAAAAAAAAAAA- 576
consensus_1868#1      ACATGGCATCTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 463
                      ******* **** **  **************************