cluster # 1869

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Oryza sativa
cluster # 1869 cluster # 1869 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1869#0 length = 1261 sequences # 1

consensus_1869#1 length = 586 sequences # 1

consensusID : consensus_1869#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1261
fasta sequence

                              [ACGCTGTTTAGGTTGGTTAGCCTCCAAGCCGCCTCCGAGCAGCAGCAGCAGCAGCAGCAGTCGGCGTCCTACAACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAGACGAACGCGTCCTACAGCTACTACCACCACAGCAGCAACAGCGGCGGCGGCGGCGGAGGCGGCGGAGGGTACTACTACGGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGGAGCCGTACCAAGAAGAATGCGGCAACGCCCCACACCACCAGCTTTACATGGATGAAGACTTCTCCTCCTCGTCGTCGTCGAGGCACTTCCACCACGGCGCGCGGGTGCAGCAGCAGCAGCCGCCGGCGTCGTCCACGCCCACGGGGACGGCGCCGACGCCGCCGCTGTCGACCTCGTCCACCGCGGCGGGCGCCGGGCACGGCCTGTTCGAGGCGGCGGACCTGTCGTTCCCGCCGGACCTCAACCTCGACTTCTCGTCCCCGGCGTCGTCGTCCGGCGGCGGGACAGCGTCGTCGGGCGCGGTTGGGGGCGGTGGCGGCGGGAGGTGGGCTAGCCAGCTGCTGCTGGAGTGCGCGCGGTCGGTGGCCGCCCGCGACAGCCAGCGCGTGCAGCAGCTCATGTGGATGCTCAACGAGCTCGCGTCGCCGTACGGCGACGTGGAGCAGAAGCTGGCTTCCTACTTCTTGCAGGGGCTGTTCGCTCGGCTCACGGCGTCCGGGCCGCGCACGCTGCGCACGCTCGCCGCGGCGTCCGACCGGAACACGTCGTTCGACTCGACGCGGCGCACGGCGCTGCGGTTCCAGGAGCTCAGCCCCTGGTCCTCGTTTGGGCACGTCGCCGCCAATGGCGCCATCCTCGAGTCCTTCCTGGAGGTCGCCGCCGCGGCGTCGTCGGAGACGCAGCGGTTCCACATCCTCGACCTGAGCAACACGTTCTGCACGCAGTGGCCGACGCTGCTGGAGGCGCTGGCCACGCGGTCCGCCGACGAGACGCCGCACCTCTCGATCACCACCGTGGTGTCCGCCGCGCCGTCCGCGCCCACGGCGGCGGTGCAGCGCGTCATGCGGGAGATCGGGCAGCGCATGGAGAAGTTCGCGCGGCTCATGGGCGTGCCCTTCCGCTTCCGCGCCGTGCACCACTCCGGGGACCTCGCGGAGCTCGACCTCGACGCGCTCGACCTCCGCGAGGGCGGCGCCACCACCGCGCTCGCCGTCAACTGCGTCAACTCGCTGCGCGGCGTGG]

[+] EMBL AK120959             [ACGCTGTTTAGGTTGGTTAGCCTCCAAGCCGCCTCCGAGCAGCAGCAGCAGCAGCAGCAGTCGGCGTCCTACAACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAGACGAACGCGTCCTACAGCTACTACCACCACAGCAGCAACAGCGGCGGCGGCGGCGGAGGCGGCGGAGGGTACTACTACGGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGGAGCCGTACCAAGAAGAATGCGGCAACGCCCCACACCACCAGCTTTACATGGATGAAGACTTCTCCTCCTCGTCGTCGTCGAGGCACTTCCACCACGGCGCGCGGGTGCAGCAGCAGCAGCCGCCGGCGTCGTCCACGCCCACGGGGACGGCGCCGACGCCGCCGCTGTCGACCTCGTCCACCGCGGCGGGCGCCGGGCACGGCCTGTTCGAGGCGGCGGACCTGTCGTTCCCGCCGGACCTCAACCTCGACTTCTCGTCCCCGGCGTCGTCGTCCGGCGGCGGGACAGCGTCGTCGGGCGCGGTTGGGGGCGGTGGCGGCGGGAGGTGGGCTAGCCAGCTGCTGCTGGAGTGCGCGCGGTCGGTGGCCGCCCGCGACAGCCAGCGCGTGCAGCAGCTCATGTGGATGCTCAACGAGCTCGCGTCGCCGTACGGCGACGTGGAGCAGAAGCTGGCTTCCTACTTCTTGCAGGGGCTGTTCGCTCGGCTCACGGCGTCCGGGCCGCGCACGCTGCGCACGCTCGCCGCGGCGTCCGACCGGAACACGTCGTTCGACTCGACGCGGCGCACGGCGCTGCGGTTCCAGGAGCTCAGCCCCTGGTCCTCGTTTGGGCACGTCGCCGCCAATGGCGCCATCCTCGAGTCCTTCCTGGAGGTCGCCGCCGCGGCGTCGTCGGAGACGCAGCGGTTCCACATCCTCGACCTGAGCAACACGTTCTGCACGCAGTGGCCGACGCTGCTGGAGGCGCTGGCCACGCGGTCCGCCGACGAGACGCCGCACCTCTCGATCACCACCGTGGTGTCCGCCGCGCCGTCCGCGCCCACGGCGGCGGTGCAGCGCGTCATGCGGGAGATCGGGCAGCGCATGGAGAAGTTCGCGCGGCTCATGGGCGTGCCCTTCCGCTTCCGCGCCGTGCACCACTCCGGGGACCTCGCGGAGCTCGACCTCGACGCGCTCGACCTCCGCGAGGGCGGCGCCACCACCGCGCTCGCCGTCAACTGCGTCAACTCGCTGCGCGGCGTGG]




>consensus_1869#0
ACGCTGTTTAGGTTGGTTAGCCTCCAAGCCGCCTCCGAGCAGCAGCAGCAGCAGCAGCAG
TCGGCGTCCTACAACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAG
ACGAACGCGTCCTACAGCTACTACCACCACAGCAGCAACAGCGGCGGCGGCGGCGGAGGC
GGCGGAGGGTACTACTACGGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGGAG
CCGTACCAAGAAGAATGCGGCAACGCCCCACACCACCAGCTTTACATGGATGAAGACTTC
TCCTCCTCGTCGTCGTCGAGGCACTTCCACCACGGCGCGCGGGTGCAGCAGCAGCAGCCG
CCGGCGTCGTCCACGCCCACGGGGACGGCGCCGACGCCGCCGCTGTCGACCTCGTCCACC
GCGGCGGGCGCCGGGCACGGCCTGTTCGAGGCGGCGGACCTGTCGTTCCCGCCGGACCTC
AACCTCGACTTCTCGTCCCCGGCGTCGTCGTCCGGCGGCGGGACAGCGTCGTCGGGCGCG
GTTGGGGGCGGTGGCGGCGGGAGGTGGGCTAGCCAGCTGCTGCTGGAGTGCGCGCGGTCG
GTGGCCGCCCGCGACAGCCAGCGCGTGCAGCAGCTCATGTGGATGCTCAACGAGCTCGCG
TCGCCGTACGGCGACGTGGAGCAGAAGCTGGCTTCCTACTTCTTGCAGGGGCTGTTCGCT
CGGCTCACGGCGTCCGGGCCGCGCACGCTGCGCACGCTCGCCGCGGCGTCCGACCGGAAC
ACGTCGTTCGACTCGACGCGGCGCACGGCGCTGCGGTTCCAGGAGCTCAGCCCCTGGTCC
TCGTTTGGGCACGTCGCCGCCAATGGCGCCATCCTCGAGTCCTTCCTGGAGGTCGCCGCC
GCGGCGTCGTCGGAGACGCAGCGGTTCCACATCCTCGACCTGAGCAACACGTTCTGCACG
CAGTGGCCGACGCTGCTGGAGGCGCTGGCCACGCGGTCCGCCGACGAGACGCCGCACCTC
TCGATCACCACCGTGGTGTCCGCCGCGCCGTCCGCGCCCACGGCGGCGGTGCAGCGCGTC
ATGCGGGAGATCGGGCAGCGCATGGAGAAGTTCGCGCGGCTCATGGGCGTGCCCTTCCGC
TTCCGCGCCGTGCACCACTCCGGGGACCTCGCGGAGCTCGACCTCGACGCGCTCGACCTC
CGCGAGGGCGGCGCCACCACCGCGCTCGCCGTCAACTGCGTCAACTCGCTGCGCGGCGTG
G

consensusID : consensus_1869#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [TCTCCCTCTCCACCCTCCTCTCCTTCTCTCATCGATCCGGCCAAAAGCTACTCAAATGTTATCGATCTCACCAAAAGAGAAGCAAAGAGAAAGAGAGCATCAAAAGCACAAACACCAAGCCACTCACCACACCTCGCAATTTACATGGCTCCTACTAGGTTGTGTAGCTGCTACTAGCTAGCTCAGCTCGGCTCGGCTCGGCTCGCCATTAAAATCCCCTTGTTACCGCGCGTTGTTTGGTTGTACCGCGCCATATGTTGCCGGCTCCCTCTCGTCGNCGTTGCTTAATGGATACGCTGGTTAAGGTGGTTAGGCTCCAAGNCGGCTCCGAACAGCAGCAGCAGCAGCAGCAGTCGGCGTCCTAACACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAGACGAAACGCGTCTACAGCTACTACCACCCACAGCAGCACAGCGGCGGGCGCCGCCGAAGCGGCGGAAGGTACTTACTACGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGNAGCCGTACCAAGAAAATGCGCNNACGCCCACACCACCAGCTTTACATGGATGAAA]

[+] EMBL CA756350             [TCTCCCTCTCCACCCTCCTCTCCTTCTCTCATCGATCCGGCCAAAAGCTACTCAAATGTTATCGATCTCACCAAAAGAGAAGCAAAGAGAAAGAGAGCATCAAAAGCACAAACACCAAGCCACTCACCACACCTCGCAATTTACATGGCTCCTACTAGGTTGTGTAGCTGCTACTAGCTAGCTCAGCTCGGCTCGGCTCGGCTCGCCATTAAAATCCCCTTGTTACCGCGCGTTGTTTGGTTGTACCGCGCCATATGTTGCCGGCTCCCTCTCGTCGNCGTTGCTTAATGGATACGCTGGTTAAGGTGGTTAGGCTCCAAGNCGGCTCCGAACAGCAGCAGCAGCAGCAGCAGTCGGCGTCCTAACACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAGACGAAACGCGTCTACAGCTACTACCACCCACAGCAGCACAGCGGCGGGCGCCGCCGAAGCGGCGGAAGGTACTTACTACGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGNAGCCGTACCAAGAAAATGCGCNNACGCCCACACCACCAGCTTTACATGGATGAAA]




>consensus_1869#1
TCTCCCTCTCCACCCTCCTCTCCTTCTCTCATCGATCCGGCCAAAAGCTACTCAAATGTT
ATCGATCTCACCAAAAGAGAAGCAAAGAGAAAGAGAGCATCAAAAGCACAAACACCAAGC
CACTCACCACACCTCGCAATTTACATGGCTCCTACTAGGTTGTGTAGCTGCTACTAGCTA
GCTCAGCTCGGCTCGGCTCGGCTCGCCATTAAAATCCCCTTGTTACCGCGCGTTGTTTGG
TTGTACCGCGCCATATGTTGCCGGCTCCCTCTCGTCGNCGTTGCTTAATGGATACGCTGG
TTAAGGTGGTTAGGCTCCAAGNCGGCTCCGAACAGCAGCAGCAGCAGCAGCAGTCGGCGT
CCTAACACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAGACGAAAC
GCGTCTACAGCTACTACCACCCACAGCAGCACAGCGGCGGGCGCCGCCGAAGCGGCGGAA
GGTACTTACTACGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGNAGCCGTACC
AAGAAAATGCGCNNACGCCCACACCACCAGCTTTACATGGATGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1869#0      ACGCTGTTTAGGTTGGTTAGCCTCCAAGCCGCCTCCGAGCAGCAGCAGCAGCAGCAGCAG 60
consensus_1869#1      ------------------------------------------------------------
                                                                                  

consensus_1869#0      TCGGCGTCCTACAACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAG 120
consensus_1869#1      ------------------------------------------------------------
                                                                                  

consensus_1869#0      ACGAACGCGTCCTACAGCTACTACCACCACAGCAGCAACAGCGGCGGCGGCGGCGGAGGC 180
consensus_1869#1      ------------------------------------------------------------
                                                                                  

consensus_1869#0      GGCGGAGGGTACTACTACGGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGGAG 240
consensus_1869#1      ------------------------------------------------------------
                                                                                  

consensus_1869#0      CCGTACCAAGAAGAATGCGGCAACGCCCCACACCACCAGCTTTACATGGATGAAGACTTC 300
consensus_1869#1      ------------------------------------------------------------
                                                                                  

consensus_1869#0      TCCTCCTCGTCGTCGTCGAGGCACTTCCACCACGGCGCGCGGGTGCAGCAGCAGCAGCCG 360
consensus_1869#1      ------------------------------------------------------------
                                                                                  

consensus_1869#0      CCGGCGTCGTCCACGCCCACGGGGACGGCGCCGACGCCGCCGCTGTCGACCTCGTCCACC 420
consensus_1869#1      ------------------------------------------------------------
                                                                                  

consensus_1869#0      GCGGCGGGCGCCGGGCACGGCCTGTTCGAGGCGGCGGACCTGTCGTTCCCGCCGGACCTC 480
consensus_1869#1      ----------------------------------------------TCTCCCT---CTCC 11
                                                                    ** * *    *  *

consensus_1869#0      AACCTCGACTTCTCGTCCCCGGCGTCGTCGTCCGGCGGCGGGACAG-CGTCGTCGGGCGC 539
consensus_1869#1      ACCCTCCTCTCCTTCTCTCATCGATC--CGGCCAAAAGCTACTCAAATGTTATCGATCTC 69
                      * ****  ** **  ** *     **  ** **    **    **   **  ***  * *

consensus_1869#0      GGTTGGGGGCGGTGGCGGCGGGAGGTGGGCTAGCCAGCTGCTGCTGGAGTGCGCGCGGTC 599
consensus_1869#1      ACCAAAAGA--GAAGCAAAGAGAAAGAGAGCA-TCAAAAGC--ACAAACACCAAGCCACT 124
                             *   *  **   * **    *   *  **   **      *   *  **    

consensus_1869#0      GGTGGCCGCCCGCGACAGCCAGCGCGTGCAGCAGCTCATGTGGATGCT--CAACGAGCTC 657
consensus_1869#1      CACCACACCTCGCAATTTACATGGCTCCTACTAGGTTGTGTAGCTGCTACTAGCTAGCTC 184
                           *  * *** *    **  **    *  ** *  *** * ****   * * *****

consensus_1869#0      GCGTCGCCGTACGGCGACGTGGAGCAGAAGCTGGCTTCCTACTTCTTGCAGGGGCTGTTC 717
consensus_1869#1      AGCTCGGCTCGGCTCGGCTCGCCATTAAAATCCCCTTGTTACCGC------GCGTTGTTT 238
                         *** *      ** *  *      **     ***  ***  *      * * **** 

consensus_1869#0      GCTCGGCTCACGGCGTCCG--GGCCGCGCACGCTGCGCACGCTCGCCGCGGCGTCCGACC 775
consensus_1869#1      GGTTGTACCGCGCCATATGTTGCCGGCTCCCTCTCGTCGNCGTTGCTTAATGGATACGCT 298
                      * * *   * ** * *  *  * * ** * * **   *    * **      *     * 

consensus_1869#0      GGAACACGTCGTTCGACTCGACGCGGCGCACGGCGCTGCGGTTCCAGGAGCTCAGCCCCT 835
consensus_1869#1      GGTTAAGGTGGTTAGGCTCCAAGNCG-GCTCCGAACAGCAGCAGCAGCAGC--AGC---- 351
                      **   * ** *** * *** * *  * ** * *  * ** *   *** ***  ***    

consensus_1869#0      GGTCCTCGTTTGGGCACGTCGCCGCCAATGGCGCCATCCTCGAGTCCTTCCTGGAGGTCG 895
consensus_1869#1      AGTCGGCGTCCTAACAC-TCGAGGAGCACGACG------TCGAGCGGGTCC---AGGTCG 401
                       ***  ***     *** ***  *   * * **      *****    ***   ******

consensus_1869#0      CCGCCGCGGCGTCGTCGGAGACGCAGCGGTTCCACATCCTCGACCTGAGCAACACGTTCT 955
consensus_1869#1      TCGTCGC---ACCAGACGAAACGCGTCTACAGC-TACTACCACCCACAGCAGCACAG-CG 456
                       ** ***     *    ** ****  *     *  *    *  **  **** ***   * 

consensus_1869#0      GCACGCAGTGGCCGACGCTGCTGGAGGCGCTGGCCACGCGGTCCGCCGACGAGACGCCGC 1015
consensus_1869#1      GCGGGC-GCCGCCGAAGCGGCGGAAGGTACTTACTACGCGGCCAGCAGCCGC--CGCCG- 512
                      **  ** *  ***** ** ** * ***  **  * ****** * ** * **   ***** 

consensus_1869#0      ACCTCTCGATCACCACCGTGGTGTCCGCCGCGCCGTCCGCGCCCACGGCGGCGGTGC-AG 1074
consensus_1869#1      -TCGCAGTACTACTACC-TGNAGCCGTACCAAGAAAATGCGCNNACGCCCACACCACCAG 570
                        * *   *  ** *** **  * *   *         ****  *** *  *    * **

consensus_1869#0      CGCGTCATGCGGGAGATCGGGCAGCGCATGGAGAAGTTCGCGCGGCTCATGGGCGTGCCC 1134
consensus_1869#1      CTTTACATGGATGAAA-------------------------------------------- 586
                      *    ****   ** *                                            

consensus_1869#0      TTCCGCTTCCGCGCCGTGCACCACTCCGGGGACCTCGCGGAGCTCGACCTCGACGCGCTC 1194
consensus_1869#1      ------------------------------------------------------------
                                                                                  

consensus_1869#0      GACCTCCGCGAGGGCGGCGCCACCACCGCGCTCGCCGTCAACTGCGTCAACTCGCTGCGC 1254
consensus_1869#1      ------------------------------------------------------------
                                                                                  

consensus_1869#0      GGCGTGG 1261
consensus_1869#1      -------