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Oryza sativa
cluster # 1872 cluster # 1872       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1872#0 length = 1563 sequences # 2  

consensusID : consensus_1872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1563
fasta sequence
                              [CGCAAGCTCACGCAGCTCCAGCACTGGCCTCGTGTTCGATCGATGGACATGGCGGCCTGCGTCGACGACGTCGGCAAGCCGCGGGCGTCGAGGAAGGTGTGCGTGATCGCCGCCGCCGCCGCCGCGAAGCCGGTGAGGGTGCACAGCAGCATGTACGCCTCGCTCCGGCTGCTCGGCCCCCGCGAGGTCATGGGATTCTCCGACTTCCAGTTCGTGCCGGCCAGGAAGAGCCGCTGCGGCGGCGGCGACAACCCCGGCGGCCGCGACCCGCGCCGCTTCCCGGGGCACCGCGAGGTGTACCTCTACCTCAGGGACTTTTACCGCGCGGCGGGGCTCACCGACTCCGTCAGGTTTAACACCAGGGTGGTGCGCGTCGCCGTGGCGCCGCCGCCATGCCGAGGTGGCCCCGGCGACGCGCTGAGATGGGTGGTGAGATCCATGGACGCCGGCCTCTGGAAGCGATGCACCGATGACCAGATGGCGGAGGCGCACTGCGTCGAGGAGGTGTTCGACGCCGTCGTCGTGGCCACCGGCCACTACTCGCAACCAAAGCTGCCTAGCATCCAAGGAATGGGGGATTGGAAACGGAGGCAGATGCACAGCCACTGGTACCGGGTCCCGGACTCCTTCCGCGACGAGGTGGTGGTGCTGGTGGGCTGCGGCGACAGCGGCATGGACATCGCGCTGGACCTCCTCGCCGTCGCGAGGGAGGTGCACCTCTCCGCCAAGTCTGTGGAGGCGGCCGCGACGCCGGCGATGTCCAAGATGCTGGCGAGGCACGCCAACCTCCACCTGCACCCGCAGATCGAGCGCCTGTGCGACGACGGCCGCGTGGTGTTCGCCGACGGCGGCGGGGGCGTCGTCGCCGCCGACACCGTCATGTACTGCACCGGGTACCGCTACTCGTTCCCGTTCCTGGACACCGAGGGGAAGGTCGCCGTCGACGACGACGACAACCGCATCGGGCCTCTGTTCGAGCACACGTTCCCGCCGTCGCTCGCGCCGTCGCTGTCGTTCGTCGGCATCCCGAGGAAGGTGATGGTGCCGTGGTTCTTCGAGGCGCAGGGGAGGTGGATCGCCGGCGTGCTG-TCCGGCCGGCGGGCGCTGCCGTCCGAGGAGGAGATGACGCGGT-CCGTGGAGGAGTTCTACCGCGCCAGGGAGCTCGCCGGCGTGCCCAAGGCGCACACCCACGACGTCGAGCCTCACAAAATGTATGAGCTTGGGGAGAAGTACTGCGATTTCCCGCGCACGGAGGAGTGGAAGAGGGAGCTGATGGCGATCATCAGCCGGAACACGAGCGACGACATGGAGACGTTCCGCGACCGCGACGACGACAGCGACAACGTCCGCAGGTGCCTGCAGGAGTGGTACGCCCTGGCTGAGCACCAGGCTCAAGACGAAGAAGA-CCCAGCTGCCGCTGCTGCACAAGCACCCGTGCACAGCTCGCTCTGAAGCCTGTACAGCTGTGTGTTCTGTGCTCTGCACAATCATAATTTTCTTCTACAGAGCATGAAAATTTCTGAAATAAAACAGAGCATGCAGAAATTTCGAAAAAAAAAAAAA]

[+] EMBL AK109647             [CGCAAGCTCACGCAGCTCCAGCACTGGCCTCGTGTTCGATCGATGGACATGGCGGCCTGCGTCGACGACGTCGGCAAGCCGCGGGCGTCGAGGAAGGTGTGCGTGATCGCCGCCGCCGCCGCCGCGAAGCCGGTGAGGGTGCACAGCAGCATGTACGCCTCGCTCCGGCTGCTCGGCCCCCGCGAGGTCATGGGATTCTCCGACTTCCAGTTCGTGCCGGCCAGGAAGAGCCGCTGCGGCGGCGGCGACAACCCCGGCGGCCGCGACCCGCGCCGCTTCCCGGGGCACCGCGAGGTGTACCTCTACCTCAGGGACTTTTACCGCGCGGCGGGGCTCACCGACTCCGTCAGGTTTAACACCAGGGTGGTGCGCGTCGCCGTGGCGCCGCCGCCATGCCGAGGTGGCCCCGGCGACGCGCTGAGATGGGTGGTGAGATCCATGGACGCCGGCCTCTGGAAGCGATGCACCGATGACCAGATGGCGGAGGCGCACTGCGTCGAGGAGGTGTTCGACGCCGTCGTCGTGGCCACCGGCCACTACTCGCAACCAAAGCTGCCTAGCATCCAAGGAATGGGGGATTGGAAACGGAGGCAGATGCACAGCCACTGGTACCGGGTCCCGGACTCCTTCCGCGACGAGGTGGTGGTGCTGGTGGGCTGCGGCGACAGCGGCATGGACATCGCGCTGGACCTCCTCGCCGTCGCGAGGGAGGTGCACCTCTCCGCCAAGTCTGTGGAGGCGGCCGCGACGCCGGCGATGTCCAAGATGCTGGCGAGGCACGCCAACCTCCACCTGCACCCGCAGATCGAGCGCCTGTGCGACGACGGCCGCGTGGTGTTCGCCGACGGCGGCGGGGGCGTCGTCGCCGCCGACACCGTCATGTACTGCACCGGGTACCGCTACTCGTTCCCGTTCCTGGACACCGAGGGGAAGGTCGCCGTCGACGACGACGACAACCGCATCGGGCCTCTGTTCGAGCACACGTTCCCGCCGTCGCTCGCGCCGTCGCTGTCGTTCGTCGGCATCCCGAGGAAGGTGATGGTGCCGTGGTTCTTCGAGGCGCAGGGGAGGTGGATCGCCGGCGTGCTG TCCGGCCGGCGGGCGCTGCCGTCCGAGGAGGAGATGACGCGGT CCGTGGAGGAGTTCTACCGCGCCAGGGAGCTCGCCGGCGTGCCCAAGGCGCACACCCACGACGTCGAGCCTCACAAAATGTATGAGCTTGGGGAGAAGTACTGCGATTTCCCGCGCACGGAGGAGTGGAAGAGGGAGCTGATGGCGATCATCAGCCGGAACACGAGCGACGACATGGAGACGTTCCGCGACCGCGACGACGACAGCGACAACGTCCGCAGGTGCCTGCAGGAGTGGTACGCCCTGGCTGAGCACCAGGCTCAAGACGAAGAAGA CCCAGCTGCCGCTGCTGCACAAGCACCCGTGCACAGCTCGCTCTGAAGCCTGTACAGCTGTGTGTTCTGTGCTCTGCACAATCATAATTTTCTTCTACAGAGCATGAAAATTTCTGAAATAAAACAGAGCATGC                       ]
[+] EMBL C99185               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCGTGCTGTTCCGTCCGGCGGNCGCTGCCGTCCGAGGAGGAGATGACTCGGTCCCGTGGAGGAGTTCTACCGCGCCAGGGAGCTCGCCGGCNTGCCNAAGGCGCACACCCACGACGTCGAGCCTCACAAAATGTATGAGCTTGGGGAGAAGTACTGCGATTTCCCGCGCACGGAGGAGTGGAAGAGGGAGCTGATGGCGATCATCAGCCGGAACACGAGCGACGACATGGAGACGTTCCGCGACCGCGACGACGACAGCGACAACGTCCGCAGGTGCCTGCAGGAGTGGTACGCCCTGGCTGAGCACCAGGCTCAAGACGAAGAAGACCCCAGCTGCCGCTGCTGCACAAGCACCCGTGCACAGCTCGCTCTGAAGCCTGTACAGCTGTGTGTTCTGTGCTCTGCACAATCATAATTTTCTTCTACAGAGCATGAAAATTTCTGAAATAAAACAGAGCATGCAGAAATTTCGAAAAAAAAAAAAA]


>consensus_1872#0 CGCAAGCTCACGCAGCTCCAGCACTGGCCTCGTGTTCGATCGATGGACATGGCGGCCTGC GTCGACGACGTCGGCAAGCCGCGGGCGTCGAGGAAGGTGTGCGTGATCGCCGCCGCCGCC GCCGCGAAGCCGGTGAGGGTGCACAGCAGCATGTACGCCTCGCTCCGGCTGCTCGGCCCC CGCGAGGTCATGGGATTCTCCGACTTCCAGTTCGTGCCGGCCAGGAAGAGCCGCTGCGGC GGCGGCGACAACCCCGGCGGCCGCGACCCGCGCCGCTTCCCGGGGCACCGCGAGGTGTAC CTCTACCTCAGGGACTTTTACCGCGCGGCGGGGCTCACCGACTCCGTCAGGTTTAACACC AGGGTGGTGCGCGTCGCCGTGGCGCCGCCGCCATGCCGAGGTGGCCCCGGCGACGCGCTG AGATGGGTGGTGAGATCCATGGACGCCGGCCTCTGGAAGCGATGCACCGATGACCAGATG GCGGAGGCGCACTGCGTCGAGGAGGTGTTCGACGCCGTCGTCGTGGCCACCGGCCACTAC TCGCAACCAAAGCTGCCTAGCATCCAAGGAATGGGGGATTGGAAACGGAGGCAGATGCAC AGCCACTGGTACCGGGTCCCGGACTCCTTCCGCGACGAGGTGGTGGTGCTGGTGGGCTGC GGCGACAGCGGCATGGACATCGCGCTGGACCTCCTCGCCGTCGCGAGGGAGGTGCACCTC TCCGCCAAGTCTGTGGAGGCGGCCGCGACGCCGGCGATGTCCAAGATGCTGGCGAGGCAC GCCAACCTCCACCTGCACCCGCAGATCGAGCGCCTGTGCGACGACGGCCGCGTGGTGTTC GCCGACGGCGGCGGGGGCGTCGTCGCCGCCGACACCGTCATGTACTGCACCGGGTACCGC TACTCGTTCCCGTTCCTGGACACCGAGGGGAAGGTCGCCGTCGACGACGACGACAACCGC ATCGGGCCTCTGTTCGAGCACACGTTCCCGCCGTCGCTCGCGCCGTCGCTGTCGTTCGTC GGCATCCCGAGGAAGGTGATGGTGCCGTGGTTCTTCGAGGCGCAGGGGAGGTGGATCGCC GGCGTGCTGTCCGGCCGGCGGGCGCTGCCGTCCGAGGAGGAGATGACGCGGTCCGTGGAG GAGTTCTACCGCGCCAGGGAGCTCGCCGGCGTGCCCAAGGCGCACACCCACGACGTCGAG CCTCACAAAATGTATGAGCTTGGGGAGAAGTACTGCGATTTCCCGCGCACGGAGGAGTGG AAGAGGGAGCTGATGGCGATCATCAGCCGGAACACGAGCGACGACATGGAGACGTTCCGC GACCGCGACGACGACAGCGACAACGTCCGCAGGTGCCTGCAGGAGTGGTACGCCCTGGCT GAGCACCAGGCTCAAGACGAAGAAGACCCAGCTGCCGCTGCTGCACAAGCACCCGTGCAC AGCTCGCTCTGAAGCCTGTACAGCTGTGTGTTCTGTGCTCTGCACAATCATAATTTTCTT CTACAGAGCATGAAAATTTCTGAAATAAAACAGAGCATGCAGAAATTTCGAAAAAAAAAA AAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)