cluster # 1873

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Oryza sativa
cluster # 1873 cluster # 1873 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1873#0 length = 925 sequences # 1

consensus_1873#1 length = 598 sequences # 1

consensusID : consensus_1873#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 925
fasta sequence

                              [ATACACGAAGCTTCTCATCATGGAGGAGATGAAGAAGAGCTTTGCTCGGAGAGTGAGCCAGTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGCGGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGACTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGCGGCCATGTCGGTCGCCACGCCGTGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCGGTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCGGTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGCCGCGCACGGCGTACGGTTCCTCCATGGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGAATCGGCCAGCCGCCATTAACCCGCTCTTCTCCGGCGAATGATGATTGCGCGCGCAGGAGGAGGTGGAGATGGATGGGAGGGTGGCGCACCGGAAGGGGAAGCTGACGGCCGCCGTGGTGGAGGTGCGGAGGAAGGCGTCCGGCGAGCTGGTGGCGATAGGGAGGCAGTGGATGACCTCTACTCGGGCGAGGCCGGAGAAGAATGGCGAGAGCAGGAGCAAACTCTGAAACGAAAATTTCCTCTAAAAATCGCTTTCTCTTCTTTTCTGATTTCATCATCTCAACACCTAAAGAAAACTGTTGTAAATTCTCAAGATAGTGATAATGGCGTCCATTCGAAAGTGCCAGTAACAGTAAGTAAACTGTTGTAAATTCTCAAGATGGTATAAAAGCTCTTTTCTTC]

[+] EMBL AK107876             [ATACACGAAGCTTCTCATCATGGAGGAGATGAAGAAGAGCTTTGCTCGGAGAGTGAGCCAGTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGCGGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGACTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGCGGCCATGTCGGTCGCCACGCCGTGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCGGTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCGGTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGCCGCGCACGGCGTACGGTTCCTCCATGGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGAATCGGCCAGCCGCCATTAACCCGCTCTTCTCCGGCGAATGATGATTGCGCGCGCAGGAGGAGGTGGAGATGGATGGGAGGGTGGCGCACCGGAAGGGGAAGCTGACGGCCGCCGTGGTGGAGGTGCGGAGGAAGGCGTCCGGCGAGCTGGTGGCGATAGGGAGGCAGTGGATGACCTCTACTCGGGCGAGGCCGGAGAAGAATGGCGAGAGCAGGAGCAAACTCTGAAACGAAAATTTCCTCTAAAAATCGCTTTCTCTTCTTTTCTGATTTCATCATCTCAACACCTAAAGAAAACTGTTGTAAATTCTCAAGATAGTGATAATGGCGTCCATTCGAAAGTGCCAGTAACAGTAAGTAAACTGTTGTAAATTCTCAAGATGGTATAAAAGCTCTTTTCTTC]




>consensus_1873#0
ATACACGAAGCTTCTCATCATGGAGGAGATGAAGAAGAGCTTTGCTCGGAGAGTGAGCCA
GTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGC
GGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGA
CTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGCGGCCATGTC
GGTCGCCACGCCGTGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTC
TGCTGCTGCGGCGGTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGC
GATGGCGGCGGCGGTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCA
CAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGCCGCGCACGGCGTACGGTT
CCTCCATGGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGAATCGGCCAGCCGCCATT
AACCCGCTCTTCTCCGGCGAATGATGATTGCGCGCGCAGGAGGAGGTGGAGATGGATGGG
AGGGTGGCGCACCGGAAGGGGAAGCTGACGGCCGCCGTGGTGGAGGTGCGGAGGAAGGCG
TCCGGCGAGCTGGTGGCGATAGGGAGGCAGTGGATGACCTCTACTCGGGCGAGGCCGGAG
AAGAATGGCGAGAGCAGGAGCAAACTCTGAAACGAAAATTTCCTCTAAAAATCGCTTTCT
CTTCTTTTCTGATTTCATCATCTCAACACCTAAAGAAAACTGTTGTAAATTCTCAAGATA
GTGATAATGGCGTCCATTCGAAAGTGCCAGTAACAGTAAGTAAACTGTTGTAAATTCTCA
AGATGGTATAAAAGCTCTTTTCTTC

consensusID : consensus_1873#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [AGAAGAGCTTTGCTCGGAGAGTGAGCCAGTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGCGGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGACTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGTGGTGATGCCCGGGTTCCGCGTCTCCCTCGCCGAGCCCGGCCGCCTCGTCTGCTCCTTCTGCGTCCCCGCCGCCGTCGCCGTACGTGCGTCCTCCTTCCTTTCCCGGCGGCCATGTCGGTCGCCACGCCGTGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCGGTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCGGTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGNCGCGCACGGCGTACGGNTCCTCCATGGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGA]

[+] EMBL CA756303             [AGAAGAGCTTTGCTCGGAGAGTGAGCCAGTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGCGGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGACTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGTGGTGATGCCCGGGTTCCGCGTCTCCCTCGCCGAGCCCGGCCGCCTCGTCTGCTCCTTCTGCGTCCCCGCCGCCGTCGCCGTACGTGCGTCCTCCTTCCTTTCCCGGCGGCCATGTCGGTCGCCACGCCGTGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCGGTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCGGTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGNCGCGCACGGCGTACGGNTCCTCCATGGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGA]




>consensus_1873#1
AGAAGAGCTTTGCTCGGAGAGTGAGCCAGTGAGGCAGTCAAGCTAGCATTAGCAAGGGCG
GCGACATGGACGGCGAGTCGCCGGCGGCGGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGG
CGAGGAGGTGGCTGGAGAACCCCCGGGACTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCG
GCGACGCGTTCAACACGGTGGTGATGCCCGGGTTCCGCGTCTCCCTCGCCGAGCCCGGCC
GCCTCGTCTGCTCCTTCTGCGTCCCCGCCGCCGTCGCCGTACGTGCGTCCTCCTTCCTTT
CCCGGCGGCCATGTCGGTCGCCACGCCGTGTTCGTTCGCACTCCGATTCGGTCTCACCTG
CTTGTTCTTGGTTTCTGCTGCTGCGGCGGTGGCGGCGGCGGCGCAGGACGCGGACGGGAG
GTGGCACGCCGGGGCGATGGCGGCGGCGGTGGACAACCTGTGCGCGGCGGTGGTGTACAC
GGCGGACGGCGTGCACAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGNCGC
GCACGGCGTACGGNTCCTCCATGGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1873#0      ATACACGAAGCTTCTCATCATGGAGGAGATGAAGAAGAGCTTTGCTCGGAGAGTGAGCCA 60
consensus_1873#1      --------------------------------AGAAGAGCTTTGCTCGGAGAGTGAGCCA 28
                                                      ****************************

consensus_1873#0      GTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGC 120
consensus_1873#1      GTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGC 88
                      ************************************************************

consensus_1873#0      GGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGA 180
consensus_1873#1      GGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGA 148
                      ************************************************************

consensus_1873#0      CTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGG---------- 230
consensus_1873#1      CTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGTGGTGATGCC 208
                      **************************************************          

consensus_1873#0      ------------------------------------------------------------
consensus_1873#1      CGGGTTCCGCGTCTCCCTCGCCGAGCCCGGCCGCCTCGTCTGCTCCTTCTGCGTCCCCGC 268
                                                                                  

consensus_1873#0      -------------------------------------CGGCCATGTCGGTCGCCACGCCG 253
consensus_1873#1      CGCCGTCGCCGTACGTGCGTCCTCCTTCCTTTCCCGGCGGCCATGTCGGTCGCCACGCCG 328
                                                           ***********************

consensus_1873#0      TGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCG 313
consensus_1873#1      TGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCG 388
                      ************************************************************

consensus_1873#0      GTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCG 373
consensus_1873#1      GTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCG 448
                      ************************************************************

consensus_1873#0      GTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATC 433
consensus_1873#1      GTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATC 508
                      ************************************************************

consensus_1873#0      AGCCAGGCCATGTCCTTCTTCTCCCCGGCCGCGCACGGCGTACGGTTCCTCCATGGATCA 493
consensus_1873#1      AGCCAGGCCATGTCCTTCTTCTCCCCGGNCGCGCACGGCGTACGGNTCCTCCATGGATCA 568
                      **************************** **************** **************

consensus_1873#0      TCATCTTCATCTTGCTCTCTTCTCCTGTGAATCGGCCAGCCGCCATTAACCCGCTCTTCT 553
consensus_1873#1      TCATCTTCATCTTGCTCTCTTCTCCTGTGA------------------------------ 598
                      ******************************                              

consensus_1873#0      CCGGCGAATGATGATTGCGCGCGCAGGAGGAGGTGGAGATGGATGGGAGGGTGGCGCACC 613
consensus_1873#1      ------------------------------------------------------------
                                                                                  

consensus_1873#0      GGAAGGGGAAGCTGACGGCCGCCGTGGTGGAGGTGCGGAGGAAGGCGTCCGGCGAGCTGG 673
consensus_1873#1      ------------------------------------------------------------
                                                                                  

consensus_1873#0      TGGCGATAGGGAGGCAGTGGATGACCTCTACTCGGGCGAGGCCGGAGAAGAATGGCGAGA 733
consensus_1873#1      ------------------------------------------------------------
                                                                                  

consensus_1873#0      GCAGGAGCAAACTCTGAAACGAAAATTTCCTCTAAAAATCGCTTTCTCTTCTTTTCTGAT 793
consensus_1873#1      ------------------------------------------------------------
                                                                                  

consensus_1873#0      TTCATCATCTCAACACCTAAAGAAAACTGTTGTAAATTCTCAAGATAGTGATAATGGCGT 853
consensus_1873#1      ------------------------------------------------------------
                                                                                  

consensus_1873#0      CCATTCGAAAGTGCCAGTAACAGTAAGTAAACTGTTGTAAATTCTCAAGATGGTATAAAA 913
consensus_1873#1      ------------------------------------------------------------
                                                                                  

consensus_1873#0      GCTCTTTTCTTC 925
consensus_1873#1      ------------