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Oryza sativa
cluster # 1874 cluster # 1874       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1874#0 length = 1643 sequences # 2  

consensusID : consensus_1874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1643
fasta sequence
                              [CCGCCGACCACCTCACCACGACGCCTTTCCGCTCGCCTTTCCTCCCCAAAAACGCGGCACGAAGCGATCCTTCCTTCCTTGTTTCCGAAAATTCGCCACGAAGAAACACGTACGAAATCCGCAGGGCAGCTTAGCGTTTTCTTCTTCTCCGATCCGATCGGATTCCCCTGCCCCCGATCGCGGGAGCTGCCATGGCAGAAGGCGACGCCTACGCCGCCTCGGCCGCGGCCTCCGCGGCGTCGCCGCGGACCCCCGCGCCGCCGGAGACGCCGTCGACGCAGAAGAGGAGGCAGCGCGGGCTCGTGTCGCGGGTGTGGAAGGGGATATTCGGGCGGCGCGAGGACGTCGAGAAGCTGCTCCAGGCGCTCTCCAAGGAGGAGGAGGCCGTGCGCTCCCGCCTCCGCCGCCGCGCCCGCGCCTCCCGCCAGTCCGCCCACAACGTCCTCGCCATCGCCGCCGCGCTCGAGATTGCGGCTGTTGGATATGCGATTATGACTACAAGATCACCGGACCTCAGCTGGCAGATGAGAGCAACCCGGGTGCTGCCCATGTTCCTGATTCCTGCTTTAGCTGCTCTCATTTACTCAACTATTACAAGCGTCACGAAAATGCTTGACAACAGAGATCAACATACTCTTGAAAACCTCCGTGCTGAAAGACAGGCTAAGATTGATGAGTTGAAGGAGAGAACGAATTACTACACTACTCAACAACTTATACAGAGATATGATCTTGATCCTGCTGCAAAAGCTGCTGCAGCAACTGTTTTGGCATCTAAACTGGGTGCTGATTCTGGATTGAGAGTCTTCTTGGGAGATGAGTCGAATAGGGATGCAACATTGAGTAAAAGTAATGATGCCCAAACTACTGGACCGAGGCAAAGAAAACCAGGACACTTGAGCAACAGCACTGGAAGGACATACGGCCCTGAGTCATTAGGCGGTTCATATGCCTATGATGGTAATGAAGGTGTCACCACTCCAAATCAGAGGACTGTTGACCACTTCAGAGGTCCAGCTGGTAATGATGGGGGATGGCTCGCACGAGCAGCTGCTCTGCTTGTAGGGGAAGATCCAACTCAGTGCTATGCGTTAATATGTGGCAACTGCCATATGCATAATGGTCTTGCAAGGAAAGAGGACTTTGCATTCATTACGTATTACTGCCCGCACTGTAATGCCCTCAATGGACCACGGCAGCATGATGAGCATGAAATGGTATCTCCTGGTAAGGAGACTCCTATTTCTCATTCCGATGGCAGCATTGGCCACGCCGGTGCAAACCTTGCAAACTCAGGTGCCGGCAGCCCTATCGTGAAAGACTTACCCACGGTTGAAGAATTACCTGCGGAAAGTTCTGTTGCTACTAACTTACCATCTGCCGAAGAACTACCTGCAGAAAGTCCTATTGCCAACAACTTACCAGCAGTTGAAGAATTAGCTGCAGAGAGTCCTGTTGCCAGTAGCACACCTGCTATTGAAGAACTACCTGCAGAAGGTACCGTGGAGAAGGCAAGTATTGATCATCCTGCCAGTTGATCTTTTGTAAAGTAACTGCATATGTATTTGTTCATGGAGGGCTTTTAAATGGCTCACGGTGGTTTTATAGTTTGCTGCACTGCTCGTTGCTCAGAAAGCACACAG]

[+] EMBL AK065014             [CCGCCGACCACCTCACCACGACGCCTTTCCGCTCGCCTTTCCTCCCCAAAAACGCGGCACGAAGCGATCCTTCCTTCCTTGTTTCCGAAAATTCGCCACGAAGAAACACGTACGAAATCCGCAGGGCAGCTTAGCGTTTTCTTCTTCTCCGATCCGATCGGATTCCCCTGCCCCCGATCGCGGGAGCTGCCATGGCAGAAGGCGACGCCTACGCCGCCTCGGCCGCGGCCTCCGCGGCGTCGCCGCGGACCCCCGCGCCGCCGGAGACGCCGTCGACGCAGAAGAGGAGGCAGCGCGGGCTCGTGTCGCGGGTGTGGAAGGGGATATTCGGGCGGCGCGAGGACGTCGAGAAGCTGCTCCAGGCGCTCTCCAAGGAGGAGGAGGCCGTGCGCTCCCGCCTCCGCCGCCGCGCCCGCGCCTCCCGCCAGTCCGCCCACAACGTCCTCGCCATCGCCGCCGCGCTCGAGATTGCGGCTGTTGGATATGCGATTATGACTACAAGATCACCGGACCTCAGCTGGCAGATGAGAGCAACCCGGGTGCTGCCCATGTTCCTGATTCCTGCTTTAGCTGCTCTCATTTACTCAACTATTACAAGCGTCACGAAAATGCTTGACAACAGAGATCAACATACTCTTGAAAACCTCCGTGCTGAAAGACAGGCTAAGATTGATGAGTTGAAGGAGAGAACGAATTACTACACTACTCAACAACTTATACAGAGATATGATCTTGATCCTGCTGCAAAAGCTGCTGCAGCAACTGTTTTGGCATCTAAACTGGGTGCTGATTCTGGATTGAGAGTCTTCTTGGGAGATGAGTCGAATAGGGATGCAACATTGAGTAAAAGTAATGATGCCCAAACTACTGGACCGAGGCAAAGAAAACCAGGACACTTGAGCAACAGCACTGGAAGGACATACGGCCCTGAGTCATTAGGCGGTTCATATGCCTATGATGGTAATGAAGGTGTCACCACTCCAAATCAGAGGACTGTTGACCACTTCAGAGGTCCAGCTGGTAATGATGGGGGATGGCTCGCACGAGCAGCTGCTCTGCTTGTAGGGGAAGATCCAACTCAGTGCTATGCGTTAATATGTGGCAACTGCCATATGCATAATGGTCTTGCAAGGAAAGAGGACTTTGCATTCATTACGTATTACTGCCCGCACTGTAATGCCCTCAATGGACCACGGCAGCATGATGAGCATGAAATGGTATCTCCTGGTAAGGAGACTCCTATTTCTCATTCCGATGGCAGCATTGGCCACGCCGGTGCAAACCTTGCAAACTCAGGTGCCGGCAGCCCTATCGTGAAAGACTTACCCACGGTTGAAGAATTACCTGCGGAAAGTTCTGTTGCTACTAACTTACCATCTGCCGAAGAACTACCTGCAGAAAGTCCTATTGCCAACAACTTACCAGCAGTTGAAGAATTAGCTGCAGAGAGTCCTGTTGCCAGTAGCACACCTGCTATTGAAGAACTACCTGCAGAAGGTACCGTGGAGAAGGCAAGTATTGATCATCCTGCCAGTTGATCTTTTGTAAAGTAACTGCATATGTATTTGTTCATGGAGGGCTTTTAAATGGCTCACGGTGGTTTTATAGTTTGCTGCACTGCTCGTTG                ]
[+] EMBL AK062248             [                                                                                         AATTCGCCACGAAGAAACACGTACGAAATCCGCAGGGCAGCTTAGCGTTTTCTTCTTCTCCGATCCGATCGGATTCCCCTGCCCCCGATCGCGGGAGCTGCCATGGCAGAAGGCGACGCCTACGCCGCCTCGGCCGCGGCCTCCGCGGCGTCGCCGCGGACCCCCGCGCCGCCGGAGACGCCGTCGACGCAGAAGAGGAGGCAGCGCGGGCTCGTGTCGCGGGTGTGGAAGGGGATATTCGGGCGGCGCGAGGACGTCGAGAAGCTGCTCCAGGCGCTCTCCAAGGAGGAGGAGGCCGTGCGCTCCCGCCTCCGCCGCCGCGCCCGCGCCTCCCGCCAGTCCGCCCACAACGTCCTCGCCATCGCCGCCGCGCTCGAGATTGCGGCTGTTGGATATGCGATTATGACTACAAGATCACCGGACCTCAGCTGGCAGATGAGAGCAACCCGGGTGCTGCCCATGTTCCTGATTCCTGCTTTAGCTGCTCTCATTTACTCAACTATTACAAGCGTCACGAAAATGCTTGACAACAGAGATCAACATACTCTTGAAAACCTCCGTGCTGAAAGACAGGCTAAGATTGATGAGTTGAAGGAGAGAACGAATTACTACACTACTCAACAACTTATACAGAGATATGATCTTGATCCTGCTGCAAAAGCTGCTGCAGCAACTGTTTTGGCATCTAAACTGGGTGCTGATTCTGGATTGAGAGTCTTCTTGGGAGATGAGTCGAATAGGGATGCAACATTGAGTAAAAGTAATGATGCCCAAACTACTGGACCGAGGCAAAGAAAACCAGGACACTTGAGCAACAGCACTGGAAGGACATACGGCCCTGAGTCATTAGGCGGTTCATATGCCTATGATGGTAATGAAGGTGTCACCACTCCAAATCAGAGGACTGTTGACCACTTCAGAGGTCCAGCTGGTAATGATGGGGGATGGCTCGCACGAGCAGCTGCTCTGCTTGTAGGGGAAGATCCAACTCAGTGCTATGCGTTAATATGTGGCAACTGCCATATGCATAATGGTCTTGCAAGGAAAGAGGACTTTGCATTCATTACATATTACTGCCCGCACTGTAATGCCCTCAATGGACCACGGCAGCATGATGAGCATGAAATGGTATCTCCTGGTAAGGAGACTCCTATTTCTCATTCCGATGGCAGCATTGGCCACGCCGGTGCAAACCTTGCAAACTCAGGTGCCGGCAGCCCTATCGTGAAAGACTTACCCACGGTTGAAGAATTACCTGCGGAAAGTTCTGTTGCTACTAACTTACCATCTGCCGAAGAACTACCTGCAGAAAGTCCTATTGCCAACAACTTACCAGCAGTTGAAGAATTAGCTGCAGAGAGTCCTGTTGCCAGTAGCACACCTGCTATTGAAGAACTACCTGCAGAAGGTACCGTGGAGAAGGCAAGTATTGATCATCCTGCCAGTTGATCTTTTGTAAAGTAACTGCATATGTATTTGTTCATGGAGGGCTTTTAAATGGCTCACGGTGGTTTTATAGTTTGCTGCACTGCTCGTTGCTCAGAAAGCACACAG]


>consensus_1874#0 CCGCCGACCACCTCACCACGACGCCTTTCCGCTCGCCTTTCCTCCCCAAAAACGCGGCAC GAAGCGATCCTTCCTTCCTTGTTTCCGAAAATTCGCCACGAAGAAACACGTACGAAATCC GCAGGGCAGCTTAGCGTTTTCTTCTTCTCCGATCCGATCGGATTCCCCTGCCCCCGATCG CGGGAGCTGCCATGGCAGAAGGCGACGCCTACGCCGCCTCGGCCGCGGCCTCCGCGGCGT CGCCGCGGACCCCCGCGCCGCCGGAGACGCCGTCGACGCAGAAGAGGAGGCAGCGCGGGC TCGTGTCGCGGGTGTGGAAGGGGATATTCGGGCGGCGCGAGGACGTCGAGAAGCTGCTCC AGGCGCTCTCCAAGGAGGAGGAGGCCGTGCGCTCCCGCCTCCGCCGCCGCGCCCGCGCCT CCCGCCAGTCCGCCCACAACGTCCTCGCCATCGCCGCCGCGCTCGAGATTGCGGCTGTTG GATATGCGATTATGACTACAAGATCACCGGACCTCAGCTGGCAGATGAGAGCAACCCGGG TGCTGCCCATGTTCCTGATTCCTGCTTTAGCTGCTCTCATTTACTCAACTATTACAAGCG TCACGAAAATGCTTGACAACAGAGATCAACATACTCTTGAAAACCTCCGTGCTGAAAGAC AGGCTAAGATTGATGAGTTGAAGGAGAGAACGAATTACTACACTACTCAACAACTTATAC AGAGATATGATCTTGATCCTGCTGCAAAAGCTGCTGCAGCAACTGTTTTGGCATCTAAAC TGGGTGCTGATTCTGGATTGAGAGTCTTCTTGGGAGATGAGTCGAATAGGGATGCAACAT TGAGTAAAAGTAATGATGCCCAAACTACTGGACCGAGGCAAAGAAAACCAGGACACTTGA GCAACAGCACTGGAAGGACATACGGCCCTGAGTCATTAGGCGGTTCATATGCCTATGATG GTAATGAAGGTGTCACCACTCCAAATCAGAGGACTGTTGACCACTTCAGAGGTCCAGCTG GTAATGATGGGGGATGGCTCGCACGAGCAGCTGCTCTGCTTGTAGGGGAAGATCCAACTC AGTGCTATGCGTTAATATGTGGCAACTGCCATATGCATAATGGTCTTGCAAGGAAAGAGG ACTTTGCATTCATTACGTATTACTGCCCGCACTGTAATGCCCTCAATGGACCACGGCAGC ATGATGAGCATGAAATGGTATCTCCTGGTAAGGAGACTCCTATTTCTCATTCCGATGGCA GCATTGGCCACGCCGGTGCAAACCTTGCAAACTCAGGTGCCGGCAGCCCTATCGTGAAAG ACTTACCCACGGTTGAAGAATTACCTGCGGAAAGTTCTGTTGCTACTAACTTACCATCTG CCGAAGAACTACCTGCAGAAAGTCCTATTGCCAACAACTTACCAGCAGTTGAAGAATTAG CTGCAGAGAGTCCTGTTGCCAGTAGCACACCTGCTATTGAAGAACTACCTGCAGAAGGTA CCGTGGAGAAGGCAAGTATTGATCATCCTGCCAGTTGATCTTTTGTAAAGTAACTGCATA TGTATTTGTTCATGGAGGGCTTTTAAATGGCTCACGGTGGTTTTATAGTTTGCTGCACTG CTCGTTGCTCAGAAAGCACACAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)