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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2590 fasta sequence
[CTCGTCGGCGGCGGAGCTCCGGCCAACCCACGGCGGCGGGCCGGGACAAGGTAGCGGAGATGATGCACCGAAGTTTACCCGGCGGCGGCGGCGGCAGCACATCAGCTGGTGAAGGGGGAGGAGGAATTGAAGGATGGGGATTCGAAGAAAGTACGGCGCGGCTGCTGCCCTAGGCGAAGGCGTTGGGCTCTCCGTGGCAAGAACGCCGCCGGTCGCGACCACCATCTGGCGGTATCCCGGGCGGCAGCAGAGTACCAGACTGCAATCCTGGCTGCTGAGGTAACATTTTGTGGTTTTAACAAGGGAAAATTCGAGTTGAGAAGCACGATATTTTTCGTACTGAATTTTCTGTGCATCTGTGGCTTAAGATTTTACAGCGACGAGAAATTATCCGTGAATTAGATTTGAGATGACAGATGATAGACCACATGCCTGAGCATTATCCAACATTTCATATGGATAGTCACAAGGGGTGAAGCACAATTGTGTTATTGGCATCAATAGTTGATGAAAAACGATTATGTGATTAGATCAGTTATGGTCATACAGCATAAGATGCTCAATGCTTAGGGAGTGCCATTTGATTTCTTAGTCAATTGCTGAATATACTGGCAGCAAATGGAAGACAACGAATGTTCAAGCACCGAGTCGAAAAATTCTTTGGATTTTGAACTAACTTAGATTTGTATATGCAGGGCACAGATGCAACTTGTGAAGATATATTTGTTTATCTTTCAGGTTCTATTTCTCAGGTTTTATCTGATAATGTTCACAAGTAGAATGAAATTATTATCTTTCATCTAGAACTGTTATATACTGCATCGTTGATTACATGCAAAATAAATCTTAGAGAAAAAAGGAAAATAGGCGGAGAACAACAGTGTCCCCAAGACCCAAACATCCCACAGGACCTGGAAACATACAATTGGCGTACCATGTAACTGATGCTATTCTGTTCTTCCTTCAAATAGCTTCATCAATTGTGCCTTCAGCAGCTCAGGGGTATACCACTCATGCTTTCTCTTAGCCTTCATATACTTGTCAAGGTGTGCTTGGTAAGCCAAGATTACCTTGTCACAGACAGCTCGCCGCACTTTCTCCCGAAGCTGAGGATCTTCCACCTTCCAGCACTCTTGGTTATAATAAGTTGAATCGAACTGGAGGCTAAACCTTACGGTACTGGAAGGCTGACTGAAGCAGCCACCAAGCATGCCTGTCCTGGCACTGAGGCATGATATTGCAGGCCCCCATGACAAGTCCACATAAGTCTTCAAATACTGCTCGATGAATTCTCTGTGCACTTGAACCCATGACTGCCCTAGGAGTGAGATCAGCTCTGAACCCTCCACTTGCTTGACAACAAAATGCAGGTTGTTCATAAGAAAGAAGCATTGTAAACCTTGAGATTCATAGGCCTCAGGTGCCTTGTTGAGCATGGATTCCAAGCAGATAATCAGATCTTGCACAATATGATCCAGGGAGTCCATCCGCTCATTGTCCTTGTTGCGATCATCGTTTCCGAGGATGAGACCAAGTGTGGTCTTATGATGCAACAACAACCTGATGTAATTCATGACATAGCGAGTCACTTCATGGATTCCCCCACCTGGTGGTACACGCCTAGAAGCACGGGTTTGGATCAAAATTTTAAGCTCACGAAGCATGTGGTACACGGCCATCCTTAGCTTCTGCAGCGTGTCATCATACTTTGCCACGCTGAACTCTTCTGGACGACATTGCGATACAAGGAAGAAGTCTGGGTTGAGTACCCTTGAGCAGCCTCAGCACCACGAAGAGCTTGTCAGGGGACAATTGTAGCTTGGTGATCTCATCTGCAAAGGCGAGAAGTCGAAGCTTGTATGACCATACGAGTGCATGCTGCCTTCCTGCCTTGCTGTGGATCTCCTTCACCATCGCATCAATCTCTCTCTGCGCCATGTGCCACTGTGACGCTGCAGCCATGTGGTGACCTCCTCTGATGTTGATGATCATTTCGGTGATGTTTTTGCAGGTGTTGGGATCAATTTCTTCAGAGCCGACATTGCTGGAGCCAGAGGCAGATGTCGATGACTCCACGGCACTGGTGGGGAACATGAACGACTCACCGCTAGAGATTGGGGAGGCTGCCATGGTCTGAATTTCTGGAGCTACTAACACTATTTCGTATCTGCAGTTTCTGTTCATGTGATTTGCACATTGTTGTACGGAGATCAAAGGCCTATTCAGTGGTTATAGAGTTGACACTACATTATGGTAATGACTCCGCGTGGAAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCGTGTGGAAACTAAGACAGCTTACTGAGACCACAAATTGGAACAGATTATACAACACCATATTGTGGTCTCCCTGCTAGCTGGCCCAAAATTGTGTTTGACAAAATGACATAACTGAAAGCGAAAGCCCTTGTCAGAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTGCTGTATTTTTCCACGAATTGTTGTATCTTTGATTGTTTGGAGGATAAGACATTGCAACTACAGGTAAACACCCTTTCTTCCCTGAATCTACCAGTTTATTTCTTGAG]
[+] EMBL AK073034 [CTCGTCGGCGGCGGAGCTCCGGCCAACCCACGGCGGCGGGCCGGGACAAGGTAGCGGAGATGATGCACCGAAGTTTACCCGGCGGCGGCGGCGGCAGCACATCAGCTGGTGAAGGGGGAGGAGGAATTGAAGGATGGGGATTCGAAGAAAGTACGGCGCGGCTGCTGCCCTAGGCGAAGGCGTTGGGCTCTCCGTGGCAAGAACGCCGCCGGTCGCGACCACCATCTGGCGGTATCCCGGGCGGCAGCAGAGTACCAGACTGCAATCCTGGCTGCTGAGGTAACATTTTGTGGTTTTAACAAGGGAAAATTCGAGTTGAGAAGCACGATATTTTTCGTACTGAATTTTCTGTGCATCTGTGGCTTAAGATTTTACAGCGACGAGAAATTATCCGTGAATTAGATTTGAGATGACAGATGATAGACCACATGCCTGAGCATTATCCAACATTTCATATGGATAGTCACAAGGGGTGAAGCACAATTGTGTTATTGGCATCAATAGTTGATGAAAAACGATTATGTGATTAGATCAGTTATGGTCATACAGCATAAGATGCTCAATGCTTAGGGAGTGCCATTTGATTTCTTAGTCAATTGCTGAATATACTGGCAGCAAATGGAAGACAACGAATGTTCAAGCACCGAGTCGAAAAATTCTTTGGATTTTGAACTAACTTAGATTTGTATATGCAGGGCACAGATGCAACTTGTGAAGATATATTTGTTTATCTTTCAGGTTCTATTTCTCAGGTTTTATCTGATAATGTTCACAAGTAGAATGAAATTATTATCTTTCATCTAGAACTGTTATATACTGCATCGTTGATTACATGCAAAATAAATCTTAGAGAAAAAAGGAAAATAGGCGGAGAACAACAGTGTCCCCAAGACCCAAACATCCCACAGGACCTGGAAACATACAATTGGCGTACCATGTAACTGATGCTATTCTGTTCTTCCTTCAAATAGCTTCATCAATTGTGCCTTCAGCAGCTCAGGGGTATACCACTCATGCTTTCTCTTAGCCTTCATATACTTGTCAAGGTGTGCTTGGTAAGCCAAGATTACCTTGTCACAGACAGCTCGCCGCACTTTCTCCCGAAGCTGAGGATCTTCCACCTTCCAGCACTCTTGGTTATAATAAGTTGAATCGAACTGGAGGCTAAACCTTACGGTACTGGAAGGCTGACTGAAGCAGCCACCAAGCATGCCTGTCCTGGCACTGAGGCATGATATTGCAGGCCCCCATGACAAGTCCACATAAGTCTTCAAATACTGCTCGATGAATTCTCTGTGCACTTGAACCCATGACTGCCCTAGGAGTGAGATCAGCTCTGAACCCTCCACTTGCTTGACAACAAAATGCAGGTTGTTCATAAGAAAGAAGCATTGTAAACCTTGAGATTCATAGGCCTCAGGTGCCTTGTTGAGCATGGATTCCAAGCAGATAATCAGATCTTGCACAATATGATCCAGGGAGTCCATCCGCTCATTGTCCTTGTTGCGATCATCGTTTCCGAGGATGAGACCAAGTGTGGTCTTATGATGCAACAACAACCTGATGTAATTCATGACATAGCGAGTCACTTCATGGATTCCCCCACCTGGTGGTACACGCCTAGAAGCACGGGTTTGGATCAAAATTTTAAGCTCACGAAGCATGTGGTACACGGCCATCCTTAGCTTCTGCAGCGTGTCATCATACTTTGCCACGCTGAACTCTTCTGGACGACATTGCGATACAAGGAAGAAGTCTGGGTTGAGTACCCTTGAGCAGCCTCAGCACCACGAAGAGCTTGTCAGGGGACAATTGTAGCTTGGTGATCTCATCTGCAAAGGCGAGAAGTCGAAGCTTGTATGACCATACGAGTGCATGCTGCCTTCCTGCCTTGCTGTGGATCTCCTTCACCATCGCATCAATCTCTCTCTGCGCCATGTGCCACTGTGACGCTGCAGCCATGTGGTGACCTCCTCTGATGTTGATGATCATTTCGGTGATGTTTTTGCAGGTGTTGGGATCAATTTCTTCAGAGCCGACATTGCTGGAGCCAGAGGCAGATGTCGATGACTCCACGGCACTGGTGGGGAACATGAACGACTCACCGCTAGAGATTGGGGAGGCTGCCATGGTCTGAATTTCTGGAGCTACTAACACTATTTCGTATCTGCAGTTTCTGTTCATGTGATTTGCACATTGTTGTACGGAGATCAAAGGCCTATTCAGTGGTTATAGAGTTGACACTACATTATGGTAATGACTCCGCGTGGAAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCGTGTGGAAACTAAGACAGCTTACTGAGACCACAAATTGGAACAGATTATACAACACCATATTGTGGTCTCCCTGCTAGCTGGCCCAAAATTGTGTTTGACAAAATGACATAACTGAAAGCGAAAGCCCTTGTCAGAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTGCTGTATTTTTCCACGAATTGTTGTATCTTTGATTGTTTGGAGGATAAGACATTGCAACTACAGGTAAACACCCTTTCTTCCCTGAATCTACCAGTTTATTTCTTGAG]
consensusID : consensus_1877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[TGGGCAACTTTGTCTGACTCCCCGNTAGAGATTGGGGAGCTCCCCTGGTCTGAATTTCTGGAGCTNCTACCCCTATTTCGTATCTCCAGTTTCTGTTCATGTGATTNGCACCACTTGTTGTACGGAGATCCNAAGGCCTATTCACGTGGTTATAGAGTTGACACCTACCACTTATGGTAATGACTCCCGCCGTGGAAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCCGCTGTGGAAACTAAGACCAGCTTACTGAGACCCCCAAATGTGGACACCAGATTATCCCAACCACCCATATTGTGGTCTCCCTGCTAGCTGGCCCCAAATTGTGTTTGACCAAATGACATAACTGAAAGCGAAAGCCCTTGTCATAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTCCTGTATTTTTCCCCGAATCGTTGTATCTTTGATTGTTTGGAGGATAAGACCTTGCAACTACCCGGTAAAAAAAAAA]
[+] EMBL BM038038 [TGGGCAACTTTGTCTGACTCCCCGNTAGAGATTGGGGAGCTCCCCTGGTCTGAATTTCTGGAGCTNCTACCCCTATTTCGTATCTCCAGTTTCTGTTCATGTGATTNGCACCACTTGTTGTACGGAGATCCNAAGGCCTATTCACGTGGTTATAGAGTTGACACCTACCACTTATGGTAATGACTCCCGCCGTGGAAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCCGCTGTGGAAACTAAGACCAGCTTACTGAGACCCCCAAATGTGGACACCAGATTATCCCAACCACCCATATTGTGGTCTCCCTGCTAGCTGGCCCCAAATTGTGTTTGACCAAATGACATAACTGAAAGCGAAAGCCCTTGTCATAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTCCTGTATTTTTCCCCGAATCGTTGTATCTTTGATTGTTTGGAGGATAAGACCTTGCAACTACCCGGTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1877#0 CTCGTCGGCGGCGGAGCTCCGGCCAACCCACGGCGGCGGGCCGGGACAAGGTAGCGGAGA 60
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TGATGCACCGAAGTTTACCCGGCGGCGGCGGCGGCAGCACATCAGCTGGTGAAGGGGGAG 120
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 GAGGAATTGAAGGATGGGGATTCGAAGAAAGTACGGCGCGGCTGCTGCCCTAGGCGAAGG 180
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 CGTTGGGCTCTCCGTGGCAAGAACGCCGCCGGTCGCGACCACCATCTGGCGGTATCCCGG 240
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 GCGGCAGCAGAGTACCAGACTGCAATCCTGGCTGCTGAGGTAACATTTTGTGGTTTTAAC 300
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 AAGGGAAAATTCGAGTTGAGAAGCACGATATTTTTCGTACTGAATTTTCTGTGCATCTGT 360
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 GGCTTAAGATTTTACAGCGACGAGAAATTATCCGTGAATTAGATTTGAGATGACAGATGA 420
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TAGACCACATGCCTGAGCATTATCCAACATTTCATATGGATAGTCACAAGGGGTGAAGCA 480
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 CAATTGTGTTATTGGCATCAATAGTTGATGAAAAACGATTATGTGATTAGATCAGTTATG 540
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 GTCATACAGCATAAGATGCTCAATGCTTAGGGAGTGCCATTTGATTTCTTAGTCAATTGC 600
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TGAATATACTGGCAGCAAATGGAAGACAACGAATGTTCAAGCACCGAGTCGAAAAATTCT 660
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TTGGATTTTGAACTAACTTAGATTTGTATATGCAGGGCACAGATGCAACTTGTGAAGATA 720
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TATTTGTTTATCTTTCAGGTTCTATTTCTCAGGTTTTATCTGATAATGTTCACAAGTAGA 780
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 ATGAAATTATTATCTTTCATCTAGAACTGTTATATACTGCATCGTTGATTACATGCAAAA 840
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TAAATCTTAGAGAAAAAAGGAAAATAGGCGGAGAACAACAGTGTCCCCAAGACCCAAACA 900
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TCCCACAGGACCTGGAAACATACAATTGGCGTACCATGTAACTGATGCTATTCTGTTCTT 960
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 CCTTCAAATAGCTTCATCAATTGTGCCTTCAGCAGCTCAGGGGTATACCACTCATGCTTT 1020
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 CTCTTAGCCTTCATATACTTGTCAAGGTGTGCTTGGTAAGCCAAGATTACCTTGTCACAG 1080
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 ACAGCTCGCCGCACTTTCTCCCGAAGCTGAGGATCTTCCACCTTCCAGCACTCTTGGTTA 1140
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TAATAAGTTGAATCGAACTGGAGGCTAAACCTTACGGTACTGGAAGGCTGACTGAAGCAG 1200
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 CCACCAAGCATGCCTGTCCTGGCACTGAGGCATGATATTGCAGGCCCCCATGACAAGTCC 1260
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 ACATAAGTCTTCAAATACTGCTCGATGAATTCTCTGTGCACTTGAACCCATGACTGCCCT 1320
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 AGGAGTGAGATCAGCTCTGAACCCTCCACTTGCTTGACAACAAAATGCAGGTTGTTCATA 1380
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 AGAAAGAAGCATTGTAAACCTTGAGATTCATAGGCCTCAGGTGCCTTGTTGAGCATGGAT 1440
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TCCAAGCAGATAATCAGATCTTGCACAATATGATCCAGGGAGTCCATCCGCTCATTGTCC 1500
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TTGTTGCGATCATCGTTTCCGAGGATGAGACCAAGTGTGGTCTTATGATGCAACAACAAC 1560
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 CTGATGTAATTCATGACATAGCGAGTCACTTCATGGATTCCCCCACCTGGTGGTACACGC 1620
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 CTAGAAGCACGGGTTTGGATCAAAATTTTAAGCTCACGAAGCATGTGGTACACGGCCATC 1680
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 CTTAGCTTCTGCAGCGTGTCATCATACTTTGCCACGCTGAACTCTTCTGGACGACATTGC 1740
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 GATACAAGGAAGAAGTCTGGGTTGAGTACCCTTGAGCAGCCTCAGCACCACGAAGAGCTT 1800
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 GTCAGGGGACAATTGTAGCTTGGTGATCTCATCTGCAAAGGCGAGAAGTCGAAGCTTGTA 1860
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 TGACCATACGAGTGCATGCTGCCTTCCTGCCTTGCTGTGGATCTCCTTCACCATCGCATC 1920
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 AATCTCTCTCTGCGCCATGTGCCACTGTGACGCTGCAGCCATGTGGTGACCTCCTCTGAT 1980
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 GTTGATGATCATTTCGGTGATGTTTTTGCAGGTGTTGGGATCAATTTCTTCAGAGCCGAC 2040
consensus_1877#1 ------------------------------------------------------------
consensus_1877#0 ATTGCTGGAGCCAGAGGCAGATGTCGATGACTCCACGGCACTGGTGGGGAACATGAAC-G 2099
consensus_1877#1 --------------------------------------------TGGGCAACTTTGTCTG 16
**** *** * * *
consensus_1877#0 ACTCACCGCTAGAGATTGGGGAGGCTGCCATGGTCTGAATTTCTGGAGCTACTAACACTA 2159
consensus_1877#1 ACTCCCCGNTAGAGATTGGGGAG-CTCCCCTGGTCTGAATTTCTGGAGCTNCTACCCCTA 75
**** *** ************** ** ** ******************** *** * ***
consensus_1877#0 TTTCGTATCTGCAGTTTCTGTTCATGTGATTTGCACA--TTGTTGTACGGAGATC-AAAG 2216
consensus_1877#1 TTTCGTATCTCCAGTTTCTGTTCATGTGATTNGCACCACTTGTTGTACGGAGATCCNAAG 135
********** ******************** **** **************** ***
consensus_1877#0 GCCTATTCA-GTGGTTATAGAGTTGACAC-TACA--TTATGGTAATGACTCCG--CGTGG 2270
consensus_1877#1 GCCTATTCACGTGGTTATAGAGTTGACACCTACCACTTATGGTAATGACTCCCGCCGTGG 195
********* ******************* *** **************** *****
consensus_1877#0 AAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCG--TGTGGAAACTAAGA 2328
consensus_1877#1 AAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCCGCTGTGGAAACTAAGA 255
******************************************* **************
consensus_1877#0 C-AGCTTACTGAGACCACAAATTGGAA----CAGATTATAC-AACA--CCATATTGTGGT 2380
consensus_1877#1 CCAGCTTACTGAGACCCCCAAATGTGGACACCAGATTATCCCAACCACCCATATTGTGGT 315
* ************** * ** ** ******** * *** ************
consensus_1877#0 CTCCCTGCTAGCTGGCCCAAAATTGTGTTTGACAAAATGACATAACTGAAAGCGAAAGCC 2440
consensus_1877#1 CTCCCTGCTAGCTGGCCCCAAATTGTGTTTGACCAAATGACATAACTGAAAGCGAAAGCC 375
****************** ************** **************************
consensus_1877#0 CTTGTCAGAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTGCTGTATTTTTCCACGAA 2500
consensus_1877#1 CTTGTCATAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTCCTGTATTTTTCCCCGAA 435
******* ********************************** ************ ****
consensus_1877#0 TTGTTGTATCTTTGATTGTTTGGAGGATAAGACATTGCAACTACA-GGTAAACACCCTTT 2559
consensus_1877#1 TCGTTGTATCTTTGATTGTTTGGAGGATAAGACCTTGCAACTACCCGGTAAAAAAAAAA- 494
* ******************************* ********** ****** *
consensus_1877#0 CTTCCCTGAATCTACCAGTTTATTTCTTGAG 2590
consensus_1877#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||