cluster # 1880

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Oryza sativa
cluster # 1880 cluster # 1880 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1880#0 length = 1053 sequences # 1

consensus_1880#1 length = 603 sequences # 1

consensusID : consensus_1880#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1053
fasta sequence

                              [AACTTACCAAGAGATTTTTTTTTTCATACAGTATTTTCTCTTCGAATCAGTCTGATTCTCTATTCGTACTCTCTCAATAAATAATTCAATTATGTTTGAAGCTCGTCTTTTACACGGTTCAATTTTCGCAAAAGTTATCGAAGGTCTTCGAGAGTTGGTCAATGAAGCAACATGGGAATGCAGTGGCAATGGAATTACATTACAAGCTATGGATAGTTCCCACGTGGCATTAGTTTCTCTTGTCATGCGCTCGGAAGGTTTCGAATCATATCGATGTGATCGAAATATGAGTCTCGGTATTAGTCTTGTCAGTATGTCAAAAGTATTGAAAACAATGGGCAAAGATGATTCATTGACAATCCGTGTCAACGATGATTCGGATTCGATTATTATCGCAATGGAATCACAAAATCAAGATAAATTCGCTGATTATGAATTGCGTTTAATGGATCTCGACAGCGAACATTTGGGTATCCCCGATACAGATTATTCATGTACAATTAAAATGCCAAGCAGCGAATTTTCACGCATTTGTCGTGATATGAGTATCATGGGTGATTCCGTTCTTGTTTGTACAACAAAAGAAGGTGTTAAGTTCTCCGCCAAAGGCGATCTTGGACAAGGTAGCATTCGTCTTGTTCAAACAACAAACATCGAAAAAGAAGAAGAAGCAGTTATTATCGAAATGAAAGAAGCTGTCGCACTTACATTTGCTGTTCGATATTTGAGCATGTTTTGCAAAGCGGCACCACTCTCACCACAAGTCGGATTGAGCTTATCCGAAGATACACCATTAATGTGCGAATTCAAAATTGCTGAGATGGGTCATGTTCGTTTCTACTTGGCACCGAAAATTGAAGATGCTGAAAACTAAAACAGGATATTCATTACCAATAGACTTGTCAGATGGATACTATTTTTCTTTGTCTCTATTTTTTTGTTGTTACTATGTAATTGTAAAAAAGAAAGAACGTGTCTTTTGGATGTAGTAGAATATTTTTCTTATGGAATTCCTCCACTTAACGGATATAACGGTTGTCTTGATTCTCTTTC]

[+] EMBL AK063098             [AACTTACCAAGAGATTTTTTTTTTCATACAGTATTTTCTCTTCGAATCAGTCTGATTCTCTATTCGTACTCTCTCAATAAATAATTCAATTATGTTTGAAGCTCGTCTTTTACACGGTTCAATTTTCGCAAAAGTTATCGAAGGTCTTCGAGAGTTGGTCAATGAAGCAACATGGGAATGCAGTGGCAATGGAATTACATTACAAGCTATGGATAGTTCCCACGTGGCATTAGTTTCTCTTGTCATGCGCTCGGAAGGTTTCGAATCATATCGATGTGATCGAAATATGAGTCTCGGTATTAGTCTTGTCAGTATGTCAAAAGTATTGAAAACAATGGGCAAAGATGATTCATTGACAATCCGTGTCAACGATGATTCGGATTCGATTATTATCGCAATGGAATCACAAAATCAAGATAAATTCGCTGATTATGAATTGCGTTTAATGGATCTCGACAGCGAACATTTGGGTATCCCCGATACAGATTATTCATGTACAATTAAAATGCCAAGCAGCGAATTTTCACGCATTTGTCGTGATATGAGTATCATGGGTGATTCCGTTCTTGTTTGTACAACAAAAGAAGGTGTTAAGTTCTCCGCCAAAGGCGATCTTGGACAAGGTAGCATTCGTCTTGTTCAAACAACAAACATCGAAAAAGAAGAAGAAGCAGTTATTATCGAAATGAAAGAAGCTGTCGCACTTACATTTGCTGTTCGATATTTGAGCATGTTTTGCAAAGCGGCACCACTCTCACCACAAGTCGGATTGAGCTTATCCGAAGATACACCATTAATGTGCGAATTCAAAATTGCTGAGATGGGTCATGTTCGTTTCTACTTGGCACCGAAAATTGAAGATGCTGAAAACTAAAACAGGATATTCATTACCAATAGACTTGTCAGATGGATACTATTTTTCTTTGTCTCTATTTTTTTGTTGTTACTATGTAATTGTAAAAAAGAAAGAACGTGTCTTTTGGATGTAGTAGAATATTTTTCTTATGGAATTCCTCCACTTAACGGATATAACGGTTGTCTTGATTCTCTTTC]




>consensus_1880#0
AACTTACCAAGAGATTTTTTTTTTCATACAGTATTTTCTCTTCGAATCAGTCTGATTCTC
TATTCGTACTCTCTCAATAAATAATTCAATTATGTTTGAAGCTCGTCTTTTACACGGTTC
AATTTTCGCAAAAGTTATCGAAGGTCTTCGAGAGTTGGTCAATGAAGCAACATGGGAATG
CAGTGGCAATGGAATTACATTACAAGCTATGGATAGTTCCCACGTGGCATTAGTTTCTCT
TGTCATGCGCTCGGAAGGTTTCGAATCATATCGATGTGATCGAAATATGAGTCTCGGTAT
TAGTCTTGTCAGTATGTCAAAAGTATTGAAAACAATGGGCAAAGATGATTCATTGACAAT
CCGTGTCAACGATGATTCGGATTCGATTATTATCGCAATGGAATCACAAAATCAAGATAA
ATTCGCTGATTATGAATTGCGTTTAATGGATCTCGACAGCGAACATTTGGGTATCCCCGA
TACAGATTATTCATGTACAATTAAAATGCCAAGCAGCGAATTTTCACGCATTTGTCGTGA
TATGAGTATCATGGGTGATTCCGTTCTTGTTTGTACAACAAAAGAAGGTGTTAAGTTCTC
CGCCAAAGGCGATCTTGGACAAGGTAGCATTCGTCTTGTTCAAACAACAAACATCGAAAA
AGAAGAAGAAGCAGTTATTATCGAAATGAAAGAAGCTGTCGCACTTACATTTGCTGTTCG
ATATTTGAGCATGTTTTGCAAAGCGGCACCACTCTCACCACAAGTCGGATTGAGCTTATC
CGAAGATACACCATTAATGTGCGAATTCAAAATTGCTGAGATGGGTCATGTTCGTTTCTA
CTTGGCACCGAAAATTGAAGATGCTGAAAACTAAAACAGGATATTCATTACCAATAGACT
TGTCAGATGGATACTATTTTTCTTTGTCTCTATTTTTTTGTTGTTACTATGTAATTGTAA
AAAAGAAAGAACGTGTCTTTTGGATGTAGTAGAATATTTTTCTTATGGAATTCCTCCACT
TAACGGATATAACGGTTGTCTTGATTCTCTTTC

consensusID : consensus_1880#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [ATAGTTCACACGTCGCCCTAGTTTCACTTGTCATGCGAAGCGAAGGTTTCGAATCGTATCGATGCGATCGAAATATGAGTCTTGGTATTAGTCTCGTCAGTATGTCAAAAGTTCTTAAAACTATGGGCAAAGATGATTCATTAACCATTCGAGTTAATGACGATTCTGATTCGATTATCATTGCAATGGAATCACAAAATCAAGATAAATTCGCTGATTATGAATTACGTTTAATGGACTTAGATAGCGAACACTTAGGCATTCCCGATACAGACTATTCATGCACAATTAAAATGCCAAGTAGTGAATTCTCCCGAATCTGTCGTGATATGAGCATCATGGGCGATTCCGTACTTGTTTGTACGACGAAAGAAGGTGTTAAATTCTCGGCCAAAGGCGATCTTGGTCAAGGCAGTATTCGTCTTGTTCAAACAGCANATATCGAANAAGAAGAAGAAGCTGTTATTATCGAAATGAAAGAAGCCGTTGCATTGACATTCGCAGTTCGATATTTAAGTATGTTCTGNCAAGCTGCACCACTTTCNACCACAGTTGGTTTAAGTTTATCCGAAGATACACCATTAATGTGCGAAATTTANATTT]

[+] EMBL CA756267             [ATAGTTCACACGTCGCCCTAGTTTCACTTGTCATGCGAAGCGAAGGTTTCGAATCGTATCGATGCGATCGAAATATGAGTCTTGGTATTAGTCTCGTCAGTATGTCAAAAGTTCTTAAAACTATGGGCAAAGATGATTCATTAACCATTCGAGTTAATGACGATTCTGATTCGATTATCATTGCAATGGAATCACAAAATCAAGATAAATTCGCTGATTATGAATTACGTTTAATGGACTTAGATAGCGAACACTTAGGCATTCCCGATACAGACTATTCATGCACAATTAAAATGCCAAGTAGTGAATTCTCCCGAATCTGTCGTGATATGAGCATCATGGGCGATTCCGTACTTGTTTGTACGACGAAAGAAGGTGTTAAATTCTCGGCCAAAGGCGATCTTGGTCAAGGCAGTATTCGTCTTGTTCAAACAGCANATATCGAANAAGAAGAAGAAGCTGTTATTATCGAAATGAAAGAAGCCGTTGCATTGACATTCGCAGTTCGATATTTAAGTATGTTCTGNCAAGCTGCACCACTTTCNACCACAGTTGGTTTAAGTTTATCCGAAGATACACCATTAATGTGCGAAATTTANATTT]




>consensus_1880#1
ATAGTTCACACGTCGCCCTAGTTTCACTTGTCATGCGAAGCGAAGGTTTCGAATCGTATC
GATGCGATCGAAATATGAGTCTTGGTATTAGTCTCGTCAGTATGTCAAAAGTTCTTAAAA
CTATGGGCAAAGATGATTCATTAACCATTCGAGTTAATGACGATTCTGATTCGATTATCA
TTGCAATGGAATCACAAAATCAAGATAAATTCGCTGATTATGAATTACGTTTAATGGACT
TAGATAGCGAACACTTAGGCATTCCCGATACAGACTATTCATGCACAATTAAAATGCCAA
GTAGTGAATTCTCCCGAATCTGTCGTGATATGAGCATCATGGGCGATTCCGTACTTGTTT
GTACGACGAAAGAAGGTGTTAAATTCTCGGCCAAAGGCGATCTTGGTCAAGGCAGTATTC
GTCTTGTTCAAACAGCANATATCGAANAAGAAGAAGAAGCTGTTATTATCGAAATGAAAG
AAGCCGTTGCATTGACATTCGCAGTTCGATATTTAAGTATGTTCTGNCAAGCTGCACCAC
TTTCNACCACAGTTGGTTTAAGTTTATCCGAAGATACACCATTAATGTGCGAAATTTANA
TTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1880#0      AACTTACCAAGAGATTTTTTTTTTCATACAGTATTTTCTCTTCGAATCAGTCTGATTCTC 60
consensus_1880#1      ------------------------------------------------------------
                                                                                  

consensus_1880#0      TATTCGTACTCTCTCAATAAATAATTCAATTATGTTTGAAGCTCGTCTTTTACACGGTTC 120
consensus_1880#1      ------------------------------------------------------------
                                                                                  

consensus_1880#0      AATTTTCGCAAAAGTTATCGAAGGTCTTCGAGAGTTGGTCAATGAAGCAACATGGGAATG 180
consensus_1880#1      ------------------------------------------------------------
                                                                                  

consensus_1880#0      CAGTGGCAATGGAATTACATTACAAGCTATGGATAGTTCCCACGTGGCATTAGTTTCTCT 240
consensus_1880#1      --------------------------------ATAGTTCACACGTCGCCCTAGTTTCACT 28
                                                      ******* ***** **  ******* **

consensus_1880#0      TGTCATGCGCTCGGAAGGTTTCGAATCATATCGATGTGATCGAAATATGAGTCTCGGTAT 300
consensus_1880#1      TGTCATGCGAAGCGAAGGTTTCGAATCGTATCGATGCGATCGAAATATGAGTCTTGGTAT 88
                      *********    ************** ******** ***************** *****

consensus_1880#0      TAGTCTTGTCAGTATGTCAAAAGTATTGAAAACAATGGGCAAAGATGATTCATTGACAAT 360
consensus_1880#1      TAGTCTCGTCAGTATGTCAAAAGTTCTTAAAACTATGGGCAAAGATGATTCATTAACCAT 148
                      ****** *****************  * ***** ******************** ** **

consensus_1880#0      CCGTGTCAACGATGATTCGGATTCGATTATTATCGCAATGGAATCACAAAATCAAGATAA 420
consensus_1880#1      TCGAGTTAATGACGATTCTGATTCGATTATCATTGCAATGGAATCACAAAATCAAGATAA 208
                       ** ** ** ** ***** *********** ** **************************

consensus_1880#0      ATTCGCTGATTATGAATTGCGTTTAATGGATCTCGACAGCGAACATTTGGGTATCCCCGA 480
consensus_1880#1      ATTCGCTGATTATGAATTACGTTTAATGGACTTAGATAGCGAACACTTAGGCATTCCCGA 268
                      ****************** ***********  * ** ******** ** ** ** *****

consensus_1880#0      TACAGATTATTCATGTACAATTAAAATGCCAAGCAGCGAATTTTCACGCATTTGTCGTGA 540
consensus_1880#1      TACAGACTATTCATGCACAATTAAAATGCCAAGTAGTGAATTCTCCCGAATCTGTCGTGA 328
                      ****** ******** ***************** ** ***** ** ** ** ********

consensus_1880#0      TATGAGTATCATGGGTGATTCCGTTCTTGTTTGTACAACAAAAGAAGGTGTTAAGTTCTC 600
consensus_1880#1      TATGAGCATCATGGGCGATTCCGTACTTGTTTGTACGACGAAAGAAGGTGTTAAATTCTC 388
                      ****** ******** ******** *********** ** ************** *****

consensus_1880#0      CGCCAAAGGCGATCTTGGACAAGGTAGCATTCGTCTTGTTCAAACAACAAACATCGAAAA 660
consensus_1880#1      GGCCAAAGGCGATCTTGGTCAAGGCAGTATTCGTCTTGTTCAAACAGCANATATCGAANA 448
                       ***************** ***** ** ****************** ** * ****** *

consensus_1880#0      AGAAGAAGAAGCAGTTATTATCGAAATGAAAGAAGCTGTCGCACTTACATTTGCTGTTCG 720
consensus_1880#1      AGAAGAAGAAGCTGTTATTATCGAAATGAAAGAAGCCGTTGCATTGACATTCGCAGTTCG 508
                      ************ *********************** ** *** * ***** ** *****

consensus_1880#0      ATATTTGAGCATGTTTTGCAAAGCGGCACCACTCTCACCACAAGTCGGATTGAGCTTATC 780
consensus_1880#1      ATATTTAAGTATGTTCTGNCAAGCTGCACCACTTTCNACCACAGTTGGTTTAAGTTTATC 568
                      ****** ** ***** **  **** ******** **  *   *** ** ** ** *****

consensus_1880#0      CGAAGATACACCATTAATGTGCGAATTCAAAATTGCTGAGATGGGTCATGTTCGTTTCTA 840
consensus_1880#1      CGAAGATACACCATTAATGTGCGAAATTTANATTT------------------------- 603
                      ************************* *  * ***                          

consensus_1880#0      CTTGGCACCGAAAATTGAAGATGCTGAAAACTAAAACAGGATATTCATTACCAATAGACT 900
consensus_1880#1      ------------------------------------------------------------
                                                                                  

consensus_1880#0      TGTCAGATGGATACTATTTTTCTTTGTCTCTATTTTTTTGTTGTTACTATGTAATTGTAA 960
consensus_1880#1      ------------------------------------------------------------
                                                                                  

consensus_1880#0      AAAAGAAAGAACGTGTCTTTTGGATGTAGTAGAATATTTTTCTTATGGAATTCCTCCACT 1020
consensus_1880#1      ------------------------------------------------------------
                                                                                  

consensus_1880#0      TAACGGATATAACGGTTGTCTTGATTCTCTTTC 1053
consensus_1880#1      ---------------------------------